|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
62-449 |
4.87e-142 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 411.19 E-value: 4.87e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 62 EYKLDVIHYMNENGTSLRETAAFFNIPScETLRKWKVAYETEGLDALKSKKKGRLTMAKEKaklqhlkqnevslegsIEA 141
Cdd:NF033516 1 EFKLEAVREVLEGGKSVAEVARELGISP-STLYRWRKKYRGGGEAADAGRLKELLTPEEEE----------------NRR 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 142 LQAENERLRMENDYFKKVECLSSKEEnitdqdKAQLIYELRHKYKVVDLVKVANIARSTYYYWMKQ--AKRPDKYKKVKE 219
Cdd:NF033516 64 LKRELAELRLENEILKKARKLLRPAV------KYALIDALRGEYSVRRACRVLGVSRSTYYYWRKRppSRRAPDDAELRA 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 220 LIKEIFSENFGRYGYRRITLELRNRGHALNHKTVRRLMNILGLKCLVRLKK--YRSYKGTVGKFAPNILKRNFHASKPNE 297
Cdd:NF033516 138 RIREIFEESRGRYGYRRITALLRREGIRVNHKRVYRLMRELGLLARRRRKRrpYTTDSGHVHPVAPNLLNRQFTATRPNQ 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 298 KWVTDVTEFHLHGKKLYLSPILDLYNGEIIAYNIEHRPAYSLVSKMLNKAFQRLNDKETPILHSDQGWHYQMRQYHQSLK 377
Cdd:NF033516 218 VWVTDITYIRTAEGWLYLAVVLDLFSREIVGWSVSTSMSAELVLDALEMAIEWRGKPEGLILHSDNGSQYTSKAYREWLK 297
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207560976 378 KHNVIQSMSRKGNCLDNAVMENFFGLLKSELLYLKEFESMEQFKQELETYIHYYNHKRIKTKLKGLSPVQYR 449
Cdd:NF033516 298 EHGITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
145-456 |
2.48e-104 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 312.86 E-value: 2.48e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 145 ENERLRMENDYFKKVECLSSKEENITDQDKAQLIYELRHKYKVVDLVKVANIARSTYYYWMKQAKRPDKYKKVKELIKEI 224
Cdd:COG2801 1 ELAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 225 FSENfGRYGYRRITLELRNRGHALNHKTVRRLMNILGLKCLVRLK-KYRSYKGTVGKFAPNILkrnFHASKPNEKWVTDV 303
Cdd:COG2801 81 FAES-PRYGYRRITAELRREGIAVNRKRVRRLMRELGLQARRRRKkKYTTYSGHGGPIAPNLL---FTATAPNQVWVTDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 304 TEFHLHGKKLYLSPILDLYNGEIIAYNIEHRPAYSLVSKMLNKAFQRLNDKETPILHSDQGWHYQMRQYHQSLKKHNVIQ 383
Cdd:COG2801 157 TYIPTAEGWLYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMAIERRGPPKPLILHSDNGSQYTSKAYQELLKKLGITQ 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207560976 384 SMSRKGNCLDNAVMENFFGLLKSELLYLKEFESMEQFKQELETYIHYYNHKRIKTKLKGLSPVQYRVQSLVAA 456
Cdd:COG2801 237 SMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAAAA 309
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
196-447 |
7.78e-59 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 194.31 E-value: 7.78e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 196 IARSTYYYWMKQAKRPDKYKK-------VKELIKEIFSENFGRYGYRRITLELRNRGHALNHKTVRRLMNILGLKCLVRL 268
Cdd:PHA02517 3 IAPSTYYRCQQQRHHPDKRRAraqhddwLKSEILRVYDENHQVYGVRKVWRQLNREGIRVARCTVGRLMKELGLAGVLRG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 269 KKYRSYKGTVGKFAPNILKRNFHASKPNEKWVTDVTEFHLHGKKLYLSPILDLYNGEIIAYNIEHRPAYSLVSKMLNKAF 348
Cdd:PHA02517 83 KKVRTTISRKAVAAPDRVNRQFVATRPNQLWVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQAL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 349 QRLNDKETPILHSDQGWHYQMRQYHQSLKKHNVIQSMSRKGNCLDNAVMENFFGLLKSELLYLKEFESMEQFKQELETYI 428
Cdd:PHA02517 163 WARGRPGGLIHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWV 242
|
250
....*....|....*....
gi 1207560976 429 HYYNHKRIKTKLKGLSPVQ 447
Cdd:PHA02517 243 AWYNNRRLHERLGYTPPAE 261
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
295-391 |
5.92e-25 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 98.16 E-value: 5.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 295 PNEKWVTDVTEFHL--HGKKLYLSPILDLYNGEIIAYNIEHRPAYSLVSKMLNKAFQRLNdKETPILHSDQGWHYQMRQY 372
Cdd:pfam00665 1 PNQLWQGDFTYIRIpgGGGKLYLLVIVDDFSREILAWALSSEMDAELVLDALERAIAFRG-GVPLIIHSDNGSEYTSKAF 79
|
90
....*....|....*....
gi 1207560976 373 HQSLKKHNVIQSMSRKGNC 391
Cdd:pfam00665 80 REFLKDLGIKPSFSRPGNP 98
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
192-447 |
9.40e-15 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 74.16 E-value: 9.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 192 KVANIARSTYYYWMKQAK------------RPDKYKK-----VKELIKEIFSENfgRYGYRRITLELRNRGHALNHKTVR 254
Cdd:NF033577 21 RRFGISRKTVYKWLKRYRaggeeglidrsrRPHRSPRrtspeTEARILALRREL--RLGPRRIAYELERQGPGVSRSTVH 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 255 RLMNILGLKCLVRLKKyrsykgtvgkfAPNILKRnFHASKPNEKWVTDVTEF--HLHGKKLYLSPILDlyngeiiayniE 332
Cdd:NF033577 99 RILRRHGLSRLRALDR-----------KTGKVKR-YERAHPGELWHIDIKKLgrIPDVGRLYLHTAID-----------D 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 333 H-RPAYSL---------VSKMLNKAFQRLNDKETPILhSDQGWHYQ--MRQYHQSLKKHNVIQSMSR------KGNCldn 394
Cdd:NF033577 156 HsRFAYAElypdetaetAADFLRRAFAEHGIPIRRVL-TDNGSEFRsrAHGFELALAELGIEHRRTRpyhpqtNGKV--- 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1207560976 395 avmENFFGLLKSELLYLKEFESMEQFKQELETYIHYYNHKRIKTKLKGLSPVQ 447
Cdd:NF033577 232 ---ERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
3-65 |
5.40e-05 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 41.83 E-value: 5.40e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207560976 3 KFSSKDKIQAVKRYLEGTEGGKTIANSIGVHPRELYQWIKRFEFSGEKAFEKRYTTYSLEYKL 65
Cdd:COG2963 7 RYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQAEI 69
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
9-55 |
2.68e-04 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 38.73 E-value: 2.68e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1207560976 9 KIQAVKRYLEGtEGGKTIANSIGVHPRELYQWIKRFEFSGEKAFEKR 55
Cdd:pfam13518 2 RLKIVLLALEG-ESIKEAARLFGISRSTVYRWIRRYREGGLEGLLPR 47
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
62-449 |
4.87e-142 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 411.19 E-value: 4.87e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 62 EYKLDVIHYMNENGTSLRETAAFFNIPScETLRKWKVAYETEGLDALKSKKKGRLTMAKEKaklqhlkqnevslegsIEA 141
Cdd:NF033516 1 EFKLEAVREVLEGGKSVAEVARELGISP-STLYRWRKKYRGGGEAADAGRLKELLTPEEEE----------------NRR 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 142 LQAENERLRMENDYFKKVECLSSKEEnitdqdKAQLIYELRHKYKVVDLVKVANIARSTYYYWMKQ--AKRPDKYKKVKE 219
Cdd:NF033516 64 LKRELAELRLENEILKKARKLLRPAV------KYALIDALRGEYSVRRACRVLGVSRSTYYYWRKRppSRRAPDDAELRA 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 220 LIKEIFSENFGRYGYRRITLELRNRGHALNHKTVRRLMNILGLKCLVRLKK--YRSYKGTVGKFAPNILKRNFHASKPNE 297
Cdd:NF033516 138 RIREIFEESRGRYGYRRITALLRREGIRVNHKRVYRLMRELGLLARRRRKRrpYTTDSGHVHPVAPNLLNRQFTATRPNQ 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 298 KWVTDVTEFHLHGKKLYLSPILDLYNGEIIAYNIEHRPAYSLVSKMLNKAFQRLNDKETPILHSDQGWHYQMRQYHQSLK 377
Cdd:NF033516 218 VWVTDITYIRTAEGWLYLAVVLDLFSREIVGWSVSTSMSAELVLDALEMAIEWRGKPEGLILHSDNGSQYTSKAYREWLK 297
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207560976 378 KHNVIQSMSRKGNCLDNAVMENFFGLLKSELLYLKEFESMEQFKQELETYIHYYNHKRIKTKLKGLSPVQYR 449
Cdd:NF033516 298 EHGITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
145-456 |
2.48e-104 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 312.86 E-value: 2.48e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 145 ENERLRMENDYFKKVECLSSKEENITDQDKAQLIYELRHKYKVVDLVKVANIARSTYYYWMKQAKRPDKYKKVKELIKEI 224
Cdd:COG2801 1 ELAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 225 FSENfGRYGYRRITLELRNRGHALNHKTVRRLMNILGLKCLVRLK-KYRSYKGTVGKFAPNILkrnFHASKPNEKWVTDV 303
Cdd:COG2801 81 FAES-PRYGYRRITAELRREGIAVNRKRVRRLMRELGLQARRRRKkKYTTYSGHGGPIAPNLL---FTATAPNQVWVTDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 304 TEFHLHGKKLYLSPILDLYNGEIIAYNIEHRPAYSLVSKMLNKAFQRLNDKETPILHSDQGWHYQMRQYHQSLKKHNVIQ 383
Cdd:COG2801 157 TYIPTAEGWLYLAAVIDLFSREIVGWSVSDSMDAELVVDALEMAIERRGPPKPLILHSDNGSQYTSKAYQELLKKLGITQ 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207560976 384 SMSRKGNCLDNAVMENFFGLLKSELLYLKEFESMEQFKQELETYIHYYNHKRIKTKLKGLSPVQYRVQSLVAA 456
Cdd:COG2801 237 SMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQLAAAA 309
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
196-447 |
7.78e-59 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 194.31 E-value: 7.78e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 196 IARSTYYYWMKQAKRPDKYKK-------VKELIKEIFSENFGRYGYRRITLELRNRGHALNHKTVRRLMNILGLKCLVRL 268
Cdd:PHA02517 3 IAPSTYYRCQQQRHHPDKRRAraqhddwLKSEILRVYDENHQVYGVRKVWRQLNREGIRVARCTVGRLMKELGLAGVLRG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 269 KKYRSYKGTVGKFAPNILKRNFHASKPNEKWVTDVTEFHLHGKKLYLSPILDLYNGEIIAYNIEHRPAYSLVSKMLNKAF 348
Cdd:PHA02517 83 KKVRTTISRKAVAAPDRVNRQFVATRPNQLWVADFTYVSTWQGWVYVAFIIDVFARRIVGWRVSSSMDTDFVLDALEQAL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 349 QRLNDKETPILHSDQGWHYQMRQYHQSLKKHNVIQSMSRKGNCLDNAVMENFFGLLKSELLYLKEFESMEQFKQELETYI 428
Cdd:PHA02517 163 WARGRPGGLIHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWV 242
|
250
....*....|....*....
gi 1207560976 429 HYYNHKRIKTKLKGLSPVQ 447
Cdd:PHA02517 243 AWYNNRRLHERLGYTPPAE 261
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
295-391 |
5.92e-25 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 98.16 E-value: 5.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 295 PNEKWVTDVTEFHL--HGKKLYLSPILDLYNGEIIAYNIEHRPAYSLVSKMLNKAFQRLNdKETPILHSDQGWHYQMRQY 372
Cdd:pfam00665 1 PNQLWQGDFTYIRIpgGGGKLYLLVIVDDFSREILAWALSSEMDAELVLDALERAIAFRG-GVPLIIHSDNGSEYTSKAF 79
|
90
....*....|....*....
gi 1207560976 373 HQSLKKHNVIQSMSRKGNC 391
Cdd:pfam00665 80 REFLKDLGIKPSFSRPGNP 98
|
|
| HTH_21 |
pfam13276 |
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding ... |
216-270 |
1.91e-16 |
|
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.
Pssm-ID: 463824 [Multi-domain] Cd Length: 60 Bit Score: 73.37 E-value: 1.91e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1207560976 216 KVKELIKEIFSENFGRYGYRRITLELRNRGHA-LNHKTVRRLMNILGLKCLVRLKK 270
Cdd:pfam13276 5 ELLEAIREIFEESRGTYGYRRITAELRREGGIrVNRKRVARLMRELGLRARRRRKR 60
|
|
| rve_2 |
pfam13333 |
Integrase core domain; |
398-453 |
8.11e-16 |
|
Integrase core domain;
Pssm-ID: 372570 [Multi-domain] Cd Length: 52 Bit Score: 71.14 E-value: 8.11e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1207560976 398 ENFFGLLKSELLYLKEFESMEQFKQELETYIHYYNHKRiktkLKGLSPVQYRVQSL 453
Cdd:pfam13333 1 ESFFGSLKTEMVYGEHFKTLEELELAIFDYIEWYNNKR----LKGLSPVQYRNQSL 52
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
192-447 |
9.40e-15 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 74.16 E-value: 9.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 192 KVANIARSTYYYWMKQAK------------RPDKYKK-----VKELIKEIFSENfgRYGYRRITLELRNRGHALNHKTVR 254
Cdd:NF033577 21 RRFGISRKTVYKWLKRYRaggeeglidrsrRPHRSPRrtspeTEARILALRREL--RLGPRRIAYELERQGPGVSRSTVH 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 255 RLMNILGLKCLVRLKKyrsykgtvgkfAPNILKRnFHASKPNEKWVTDVTEF--HLHGKKLYLSPILDlyngeiiayniE 332
Cdd:NF033577 99 RILRRHGLSRLRALDR-----------KTGKVKR-YERAHPGELWHIDIKKLgrIPDVGRLYLHTAID-----------D 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 333 H-RPAYSL---------VSKMLNKAFQRLNDKETPILhSDQGWHYQ--MRQYHQSLKKHNVIQSMSR------KGNCldn 394
Cdd:NF033577 156 HsRFAYAElypdetaetAADFLRRAFAEHGIPIRRVL-TDNGSEFRsrAHGFELALAELGIEHRRTRpyhpqtNGKV--- 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1207560976 395 avmENFFGLLKSELLYLKEFESMEQFKQELETYIHYYNHKRIKTKLKGLSPVQ 447
Cdd:NF033577 232 ---ERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
383-445 |
2.15e-10 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 56.46 E-value: 2.15e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207560976 383 QSMSRKGNCLDNAVMENFFGLLKSELLYLKEFESMEQFKQELETYIHYYNHKRIKTKLKGLSP 445
Cdd:pfam13683 5 ISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
54-162 |
2.86e-08 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 51.08 E-value: 2.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 54 KRYTTYSLEYKLDVIHYMNENGTSLRETAAFFNIPScETLRKWKVAYETEGLDALKSKKKgrltmakekaklqhlkqnEV 133
Cdd:COG2963 3 KKRRRYSPEFKAEAVRLVLEGGASVAEVARELGISP-STLYRWVRQYREGGLGGFPGDGR------------------TT 63
|
90 100
....*....|....*....|....*....
gi 1207560976 134 SLEGSIEALQAENERLRMENDYFKKVECL 162
Cdd:COG2963 64 PEQAEIRRLRKELRRLEMENDILKKAAAL 92
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
64-115 |
7.85e-06 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 42.96 E-value: 7.85e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1207560976 64 KLDVIHYMNEnGTSLRETAAFFNIPScETLRKWKVAYETEGLDALKSKKKGR 115
Cdd:pfam13518 2 RLKIVLLALE-GESIKEAARLFGISR-STVYRWIRRYREGGLEGLLPRRRRP 51
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
3-65 |
5.40e-05 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 41.83 E-value: 5.40e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207560976 3 KFSSKDKIQAVKRYLEGTEGGKTIANSIGVHPRELYQWIKRFEFSGEKAFEKRYTTYSLEYKL 65
Cdd:COG2963 7 RYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQAEI 69
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
9-55 |
2.68e-04 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 38.73 E-value: 2.68e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1207560976 9 KIQAVKRYLEGtEGGKTIANSIGVHPRELYQWIKRFEFSGEKAFEKR 55
Cdd:pfam13518 2 RLKIVLLALEG-ESIKEAARLFGISRSTVYRWIRRYREGGLEGLLPR 47
|
|
| HTH_Tnp_1 |
pfam01527 |
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ... |
2-45 |
3.76e-04 |
|
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Pssm-ID: 426308 [Multi-domain] Cd Length: 75 Bit Score: 38.87 E-value: 3.76e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1207560976 2 AKFSSKDKIQAVKRYLEGTEGGKTIANSIGVHPRELYQWIKRFE 45
Cdd:pfam01527 5 RRFSEEFKLRAVKEVLEPGRTVKEVARRHGVSPNTLYQWRRQYE 48
|
|
| Rve |
COG3316 |
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons]; |
231-447 |
1.54e-03 |
|
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
Pssm-ID: 442545 [Multi-domain] Cd Length: 235 Bit Score: 39.89 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 231 RYG--YRRITLELRNRGHALNHKTVRRLmnilglkclvrlkkyrsykgtVGKFAPNILKR-NFHASKPNEKWVTDVTEFH 307
Cdd:COG3316 23 RYGlsLRDVEEMLAERGVDVSHSTIYRW---------------------VQKFAPLIAKRlRRRRPPLSDSWHVDETYIK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 308 LHGKKLYLSPILDLYnGEIIAYNIEHR----PAYSLVSKMLNKAfqrlndKETP-ILHSDQGWHYQ---MRQYHQSLKKH 379
Cdd:COG3316 82 IKGKWHYLYRAVDAE-GRILDFLLSPRrdtkAAKRFLRKALKKY------GLKPrVIVTDKLPSYGaalRELKPEGGLGV 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207560976 380 NVIQSmsrKGNcldNAVMENFFGLLKSELLYLKEFESMEQFKQELETYIHYYNHKRIKTKLKGLSPVQ 447
Cdd:COG3316 155 EHRQV---KGL---NNRIERDHRTLKRRERPMRGFKSFRTAQRFLSGFEAYYNFRRPHRSLNGATPAR 216
|
|
| HTH_29 |
pfam13551 |
Winged helix-turn helix; This helix-turn-helix domain is often found in transferases and is ... |
9-56 |
1.73e-03 |
|
Winged helix-turn helix; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.
Pssm-ID: 433301 [Multi-domain] Cd Length: 64 Bit Score: 36.58 E-value: 1.73e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1207560976 9 KIQAVKRYLEGTEGGKTIANSIGVHPRELYQWIKRFEFSGEKAFEKRY 56
Cdd:pfam13551 1 RALALLLLAEGVSTVSQAARLLGLSRRTVYRWLKRFNEGGLAALLDRP 48
|
|
| Csa3 |
COG3415 |
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein ... |
148-273 |
9.89e-03 |
|
CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; CRISPR-associated protein Csa3, CARF domain is part of the Pathway/BioSystem: CRISPR-Cas system
Pssm-ID: 442641 [Multi-domain] Cd Length: 325 Bit Score: 37.91 E-value: 9.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207560976 148 RLRMENDYFKKVECLSSKEENITDQDKAQLIYELRHKYKVVDLVKVANIARSTYYYWMKQAKR----------------- 210
Cdd:COG3415 2 RLTLTEEERRDLEKLLRKTKDAREARRLRAVLLLAEGLSVREIAERLGVSRSTVYRWLKRYREgglaglkdrprggrpsk 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1207560976 211 --PDKYKKVKELIKEIFSENFGRYGYRRITLELRNR-GHALNHKTVRRLMNILGLKCLVRLKKYRS 273
Cdd:COG3415 82 lsDEQRERLLELLREKSPDQGSRWTLAELAELLEEEfGVEVSPSTVRRLLKRLGLSYKKPRPRAPK 147
|
|
| |
