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Conserved domains on  [gi|1209255486|ref|WP_088306059|]
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helix-turn-helix domain-containing protein [Mycolicibacterium peregrinum]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 10578545)

helix-turn-helix (HTH) domain-containing protein may function in DNA binding; similar to excisionase

CATH:  1.10.1660.10
Gene Ontology:  GO:0003677
PubMed:  15808743

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_17 pfam12728
Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain.
 12-58 6.84e-05

Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain.


:

Pssm-ID: 463684 [Multi-domain]  Cd Length: 51  Bit Score: 35.90  E-value: 6.84e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1209255486 12 IEDAQRELGgIGRTTLYELIEEGHLIRARIGRRAFITGDSISRYIDS 58
Cdd:pfam12728  4 VEEAAELLG-VSRRTVYRLIRSGELPAAKIGRRWRIRKSDLEEWLER 49
 
Name Accession Description Interval E-value
HTH_17 pfam12728
Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain.
 12-58 6.84e-05

Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain.


Pssm-ID: 463684 [Multi-domain]  Cd Length: 51  Bit Score: 35.90  E-value: 6.84e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1209255486 12 IEDAQRELGgIGRTTLYELIEEGHLIRARIGRRAFITGDSISRYIDS 58
Cdd:pfam12728  4 VEEAAELLG-VSRRTVYRLIRSGELPAAKIGRRWRIRKSDLEEWLER 49
 
Name Accession Description Interval E-value
HTH_17 pfam12728
Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain.
 12-58 6.84e-05

Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain.


Pssm-ID: 463684 [Multi-domain]  Cd Length: 51  Bit Score: 35.90  E-value: 6.84e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1209255486 12 IEDAQRELGgIGRTTLYELIEEGHLIRARIGRRAFITGDSISRYIDS 58
Cdd:pfam12728  4 VEEAAELLG-VSRRTVYRLIRSGELPAAKIGRRWRIRKSDLEEWLER 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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