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MULTISPECIES: type IV secretion system protein TraC [Enterobacter]
Protein Classification
type IV secretion system protein TraC ( domain architecture ID 11486812 )
type IV secretion system protein TraC is one of the proteins encoded by the transfer (tra) region of the F pilus assembly Type-IV secretion system for plasmid transfer; is required for the assembly of mature F-pilin subunits into extended F pili
List of domain hits
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
26-868
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1542.75
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 26 N L SQT w DY P SLVAA LPYR Y YD DTNEI F V N AGSA GF IM EA A PL P GANE QVMA ALD D MLR K KLPR KT PL TVI L LA SK C VG E R 105
Cdd:PRK13721 1 V L GEM - SF P QFSRL LPYR D YD QESGL F M N DTTM GF ML EA I PL N GANE SIVE ALD H MLR T KLPR GI PL CIH L MS SK L VG D R 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 106 I DR G VSGDM W K G QM AE HL N K ITRA FWQ R S AL HG -- L ANEREY PL Y LR N YR I FI V Y GESL K RA S QTQ ri I DDLIQIRNT IR 183
Cdd:PRK13721 80 I EY G LREFS W S G EQ AE RF N A ITRA YYM R A AL TQ fp L PEGMNL PL T LR H YR V FI S Y CSPS K KK S RAD -- I LEMENLVKI IR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 184 V SL GA A R I DSINT D VN AF L S A VRE QM N Y R QEQVLMSSGDYNEDEK LN R Q V V DPGI DLKV HPSHIRMA L P E sidtrgt RLP 263
Cdd:PRK13721 158 A SL QG A S I TTQTV D AQ AF I S I VRE MI N H R PDSLYPKRRQLDPYSD LN Y Q C V EDSF DLKV RADYLTLG L R E ------- NGR 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 264 A S AC RI I N MQ L S KNP RRFA LWQ G ADN LQ NL RF P D L G I P CPF M LT W T T E L E E Q T K S QSEA FR K DT DL S KK ANSA YA AL FP G 343
Cdd:PRK13721 231 N S TA RI L N FH L A KNP EIAF LWQ M ADN YS NL LN P E L S I S CPF I LT L T L E V E D Q V K T QSEA NL K YM DL E KK SKTS YA KW FP S 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 344 TK K A A D EW RRT R EQ L N SN EIA L CNTYF N L T L F A PDNN TD A QAC E LAAV N V FRKN EL E MVTIQYQQ MRN W L AGF PF VMQ EG 423
Cdd:PRK13721 311 VE K E A K EW GEL R QR L G SN QSS L VSYFL N I T A F C PDNN ET A LEV E QDIL N S FRKN GF E LISPRFNH MRN F L TCL PF MAG EG 390
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 424 MWE DLK MT G ATL RA K S W N AVS LMP V VA ERQ L SNV G MPL PTYRNQ V AF F D M F GEENGS TN F N I AV T GTSGAGK SF L T Q GVL 503
Cdd:PRK13721 391 LFK DLK EA G VVQ RA E S F N VAN LMP L VA DNP L TPA G LLA PTYRNQ L AF I D I F FRGMNN TN Y N M AV C GTSGAGK TG L I Q PLI 470
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 504 R D VL NAN G Y A W V I DMGD S YK NY C HQA GGVYLDG AQ LRFNPFAN VR DI KH SAE G I VRL L T V L ASP TQP LD G V C E AI L QK AV 583
Cdd:PRK13721 471 R S VL DSG G F A V V F DMGD G YK SL C ENM GGVYLDG ET LRFNPFAN IT DI DQ SAE R I RDQ L S V M ASP NGN LD E V H E GL L LQ AV 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 584 MDA W EK K EHK ARIDDV HRY L TSEEVNTAF AD K PTI IA RL A E LAM LLD T Y CTW G PD GEYFN A D N P T L DGET R FA VLEL LS L 663
Cdd:PRK13721 551 RAS W LA K KNR ARIDDV VDF L KNARDSEQY AD S PTI RS RL D E MIV LLD Q Y TAN G TY GEYFN S D E P S L RDDA R MV VLEL GG L 630
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 664 ED K P K LL SSIL FSLI LA I QEK MY HS PR D LKK VCI IDE A WRLL GGS N PHAAR FIE T GYRT V RRH R GA F ITITQ G I K DF SAS 743
Cdd:PRK13721 631 ED R P S LL VAVM FSLI IY I ENR MY RT PR N LKK LNV IDE G WRLL DFK N HKVGE FIE K GYRT A RRH T GA Y ITITQ N I V DF DSD 710
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 744 K E --- A E AAW N NSS T KI T L L Q D A RA F KQ Y LADN PDQFS DM E KEV I R GF QP A LQTGY SS L L ISAGEY SS F HRLFVDP VT RA 820
Cdd:PRK13721 711 K A ssa A R AAW G NSS Y KI I L K Q S A KE F AK Y NQLY PDQFS PL E RDM I G GF GA A KDQWF SS F L LQVENH SS W HRLFVDP LS RA 790
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1211956319 821 M F SS R G E DF AYM Q NAQ K A G ATAE EA AYL LA E KKFG G E LRE LE E W VNAA 868
Cdd:PRK13721 791 M Y SS D G P DF EFV Q QKR K E G LSIH EA VWQ LA W KKFG P E MAS LE A W LEEH 838
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
26-868
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1542.75
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 26 N L SQT w DY P SLVAA LPYR Y YD DTNEI F V N AGSA GF IM EA A PL P GANE QVMA ALD D MLR K KLPR KT PL TVI L LA SK C VG E R 105
Cdd:PRK13721 1 V L GEM - SF P QFSRL LPYR D YD QESGL F M N DTTM GF ML EA I PL N GANE SIVE ALD H MLR T KLPR GI PL CIH L MS SK L VG D R 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 106 I DR G VSGDM W K G QM AE HL N K ITRA FWQ R S AL HG -- L ANEREY PL Y LR N YR I FI V Y GESL K RA S QTQ ri I DDLIQIRNT IR 183
Cdd:PRK13721 80 I EY G LREFS W S G EQ AE RF N A ITRA YYM R A AL TQ fp L PEGMNL PL T LR H YR V FI S Y CSPS K KK S RAD -- I LEMENLVKI IR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 184 V SL GA A R I DSINT D VN AF L S A VRE QM N Y R QEQVLMSSGDYNEDEK LN R Q V V DPGI DLKV HPSHIRMA L P E sidtrgt RLP 263
Cdd:PRK13721 158 A SL QG A S I TTQTV D AQ AF I S I VRE MI N H R PDSLYPKRRQLDPYSD LN Y Q C V EDSF DLKV RADYLTLG L R E ------- NGR 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 264 A S AC RI I N MQ L S KNP RRFA LWQ G ADN LQ NL RF P D L G I P CPF M LT W T T E L E E Q T K S QSEA FR K DT DL S KK ANSA YA AL FP G 343
Cdd:PRK13721 231 N S TA RI L N FH L A KNP EIAF LWQ M ADN YS NL LN P E L S I S CPF I LT L T L E V E D Q V K T QSEA NL K YM DL E KK SKTS YA KW FP S 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 344 TK K A A D EW RRT R EQ L N SN EIA L CNTYF N L T L F A PDNN TD A QAC E LAAV N V FRKN EL E MVTIQYQQ MRN W L AGF PF VMQ EG 423
Cdd:PRK13721 311 VE K E A K EW GEL R QR L G SN QSS L VSYFL N I T A F C PDNN ET A LEV E QDIL N S FRKN GF E LISPRFNH MRN F L TCL PF MAG EG 390
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 424 MWE DLK MT G ATL RA K S W N AVS LMP V VA ERQ L SNV G MPL PTYRNQ V AF F D M F GEENGS TN F N I AV T GTSGAGK SF L T Q GVL 503
Cdd:PRK13721 391 LFK DLK EA G VVQ RA E S F N VAN LMP L VA DNP L TPA G LLA PTYRNQ L AF I D I F FRGMNN TN Y N M AV C GTSGAGK TG L I Q PLI 470
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 504 R D VL NAN G Y A W V I DMGD S YK NY C HQA GGVYLDG AQ LRFNPFAN VR DI KH SAE G I VRL L T V L ASP TQP LD G V C E AI L QK AV 583
Cdd:PRK13721 471 R S VL DSG G F A V V F DMGD G YK SL C ENM GGVYLDG ET LRFNPFAN IT DI DQ SAE R I RDQ L S V M ASP NGN LD E V H E GL L LQ AV 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 584 MDA W EK K EHK ARIDDV HRY L TSEEVNTAF AD K PTI IA RL A E LAM LLD T Y CTW G PD GEYFN A D N P T L DGET R FA VLEL LS L 663
Cdd:PRK13721 551 RAS W LA K KNR ARIDDV VDF L KNARDSEQY AD S PTI RS RL D E MIV LLD Q Y TAN G TY GEYFN S D E P S L RDDA R MV VLEL GG L 630
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 664 ED K P K LL SSIL FSLI LA I QEK MY HS PR D LKK VCI IDE A WRLL GGS N PHAAR FIE T GYRT V RRH R GA F ITITQ G I K DF SAS 743
Cdd:PRK13721 631 ED R P S LL VAVM FSLI IY I ENR MY RT PR N LKK LNV IDE G WRLL DFK N HKVGE FIE K GYRT A RRH T GA Y ITITQ N I V DF DSD 710
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 744 K E --- A E AAW N NSS T KI T L L Q D A RA F KQ Y LADN PDQFS DM E KEV I R GF QP A LQTGY SS L L ISAGEY SS F HRLFVDP VT RA 820
Cdd:PRK13721 711 K A ssa A R AAW G NSS Y KI I L K Q S A KE F AK Y NQLY PDQFS PL E RDM I G GF GA A KDQWF SS F L LQVENH SS W HRLFVDP LS RA 790
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1211956319 821 M F SS R G E DF AYM Q NAQ K A G ATAE EA AYL LA E KKFG G E LRE LE E W VNAA 868
Cdd:PRK13721 791 M Y SS D G P DF EFV Q QKR K E G LSIH EA VWQ LA W KKFG P E MAS LE A W LEEH 838
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
40-853
0e+00
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 718.34
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 40 LPYR Y YD DTNE IF V N AG S A GF IM E AA PL P GA N E QVMAA L DDM LR KK LP RK T PLT V I L LA S KCV G ERI DR GVSGDMWK G QM 119
Cdd:TIGR02746 2 LPYR A YD EESG IF M N RH S M GF GL E LT PL S GA D E SLVES L SSL LR TD LP EG T DIQ V L L WG S PQI G PFL DR NEEQFSQN G GI 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 120 A E H L NKITRAFWQRS A LH G L an EREYPLY LR NY R I F IVY ge S LKRA S QTQRI I DD L IQI R NT I RVS L GA A RIDSINT D VN 199
Cdd:TIGR02746 82 L E K L ARNRVKYYLNA A QK G F -- FKNSGVT LR DF R L F LSV -- S IPFK S PNEDV I QE L RSL R ER I EST L RS A GFGCRRV D AE 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 200 AF LS A VRE QM N YRQEQVLMSSGD Y NEDEK L NR Q V VDP GI DL K VH PSHIRMALPESIDTRG TR lpasacr I INMQLSKN P R 279
Cdd:TIGR02746 158 DL LS L VRE ML N PDPDSIHPWPIS Y DPNQL L RD Q I VDP DT DL E VH EGGLEVDHEDNQGEVK TR ------- I RVFSIKRF P E 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 280 R F A LWQ GADNLQN L RF P D L G I P CPF M L TW T TEL E E Q T K SQSE A FR K DT DL S K K A N S AY A ALF P GTK K AAD E WRRT RE QLN 359
Cdd:TIGR02746 231 E F T LWQ TGNLIGD L LN P S L Q I T CPF L L SF T VRV E D Q V K KKAK A TA K AK DL N K Q A K S SM A KWV P SLE K KLK E IKYL RE AIA 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 360 S NEIA L CNT Y F N LT LF - A PDN NTDAQA cel AA VNV FRKN ELEMVTIQYQ Q MRNW LA GF PF VMQ EG MW EDLK MT G ATLRAK 438
Cdd:TIGR02746 311 S GGDS L VSM Y Y N VL LF t N PDN LRRDVE --- AA KSS FRKN GFDLAEDKRI Q LQAF LA AL PF NPT EG LF EDLK KA G RVRTLS 387
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 439 S W NAV S L M P VV A E - RQLSNV G MP LPT Y R N Q VAF FD M F ge ENG STN F NIAV T G T SGAGKSF LT Q GVLR D V L NAN G YA WVID 517
Cdd:TIGR02746 388 S A NAV N L L P LI A D w KGTKGS G LL LPT R R G Q LSA FD P F -- DSD STN Y NIAV V G G SGAGKSF FM Q ELIV D N L SRG G KV WVID 465
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 518 M G D SYK NY C HQA GG V Y LDGA --- QLRF NPF A -- NV RD I KHSAEG I VR L LTVL ASP TQP L DGVCEAI L QK A VMD AW EKKEH 592
Cdd:TIGR02746 466 V G R SYK KL C EML GG T Y IEFS pes NICL NPF T gn NV TE I DDEIDQ I TA L IALM ASP EGG L SDEQRST L EE A ILA AW KEYGN 545
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 593 K A R I D DV HRY L ts EEVNTAFA D K ptiia R LAE L AML L DT Y CTW G PD G E YFN AD N P t LD GET RF A VLEL LS LED K P K L LSS 672
Cdd:TIGR02746 546 E A T I T DV QDA L -- QQLEDDEN D P ----- R IKD L GKM L NP Y TSH G VY G R YFN GP N N - LD FSN RF V VLEL EE LED R P D L QAV 617
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 673 I LFSL ILA I QEK MY HS PR DLK K V CIIDEAW R LL G G S NP H AA R FIETGYR TV R RHR GAFITITQGI K DF SA S K EA E AA WN N 752
Cdd:TIGR02746 618 V LFSL MVR I TGE MY LT PR KRR K I CIIDEAW S LL D G A NP Q AA D FIETGYR RA R KYG GAFITITQGI E DF YS S P EA R AA YA N 697
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 753 S ST KI T L L Q D A RAFKQYL A D NP DQ FS DM EK EV I RGF q PALQTGY S S LLI SA GE Y SS F HRLFVDP VT R AM FS SR G ED F AYM 832
Cdd:TIGR02746 698 S DW KI I L R Q S A ESIAKLK A E NP FT FS PF EK RL I KSL - RTAKGAF S E LLI RS GE G SS V HRLFVDP FS R VL FS TD G PE F EEV 776
810 820
....*....|....*....|.
gi 1211956319 833 QNAQKA G ATA EEA AYL LA E K K 853
Cdd:TIGR02746 777 EELREQ G LSL EEA IEQ LA Q K H 797
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
298-833
3.50e-107
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 340.77
E-value: 3.50e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 298 L GI PC P F ML T WTTELEEQTKSQSEAF RK DTD L SK K AN S AY A ALFPGTKKA A DEWRRTREQ L N S NEIA L CNTYFN LT L FA P 377
Cdd:COG3451 31 L QL PC E F IV T QSFTPLDKDEALKKLK RK RRR L ES K RK S EQ A LVDDDAESQ A EDAEEALDE L Q S GGER L GEVHLT LT V FA D 110
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 378 D NNTDAQ A CE l AAVNVFRKNELEM V TIQYQ Q MRNW L AGF P FVMQE gmwe D L KMTGA T lrak SW N AVS L M P VVAERQLSNV 457
Cdd:COG3451 111 D LEELEE A VR - EVESALQSAGFTL V RETLN Q EEAF L SSL P GNFDY ---- R L RRRLL T ---- TS N LAA L F P FHSFELGDPW 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 458 G - MP L P T YRNQVA FFD MF gee N G ST N F N IAVT G T SG A GKSFL TQGV L RDV L NANGYAWVI D M G D SY KNYCHQA GG V Y L D - 535
Cdd:COG3451 182 G i YL L N T RSGTPV FFD FH --- D G LD N G N TLIL G P SG S GKSFL LKLL L LQL L RYGARIVIF D P G G SY EILVRAL GG T Y I D l 258
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 536 -- G AQLRF NPF A n VR D IKHSAEGIVR LL TV L AS - PTQ PL DGVCE A ILQK AV MDAWEKKEHKA R -- ID D VHRY L TSEE vnt 610
Cdd:COG3451 259 sp G SPTGL NPF D - LE D TEEKRDFLLE LL EL L LG r EGE PL TPEER A AIDR AV RALYRRADPEE R tt LS D LYEL L KEQP --- 334
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 611 afadkptiia RLAE LA ML L DT Y CTW G PD G EY F NADNPTLDGET RF A V LE L LS L E D K P K L LSSI L FS L ILA I QEKMYHSPR 690
Cdd:COG3451 335 ---------- EAKD LA AR L EP Y TKG G SY G WL F DGPTNLDLSDA RF V V FD L TE L L D N P E L RPPV L LY L LHR I WNRLRKNND 404
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 691 DLKKVCI IDEAW R LL gg S NP HA A R F I E TGYR T V R RHR GA F I TI TQ GIK DF SA S KE AEA AWN NS S TKI T L L Q DARAFKQ Y L 770
Cdd:COG3451 405 GRPTLIV IDEAW L LL -- D NP AF A E F L E EWLK T L R KYN GA V I FA TQ SVE DF LS S PI AEA IIE NS A TKI L L P Q PKADIED Y A 482
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1211956319 771 adnp DQF -- S DM E K E V IR G fqpa LQT G YSSL LI SA G EY S SFH RL FVD P VTR A MF S SRG E DF A YMQ 833
Cdd:COG3451 483 ---- ELL gl S ER E L E L IR S ---- AGR G KRDF LI KQ G NG S VVF RL DLS P EEL A LL S TKP E EV A ILD 539
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
34-248
1.33e-33
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 129.32
E-value: 1.33e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 34 PS LVAA LPY RY YD DTNEI F V N A - GS A GF IM E AA PL P GA N E Q V MAA L DDM L RKK LP RK TP LTVI L L AS KCV G ERI DR gvsg 112
Cdd:pfam11130 1 PS FSDL LPY VA YD PETGL F L N E d GS V GF VF E LS PL G GA D E S V RDT L ESL L SDD LP DG TP VQFL L F AS PDI G PYL DR ---- 76
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 113 dm WK ---- G QMAE HL NK I T -- R AFWQR S ALH G LANER e YPLY LR NY R IFIVY ge SLKRASQTQRI I DD L IQI R NTIRV SL 186
Cdd:pfam11130 77 -- LR dyrl G EQGG HL RA I A rp R GLFLD S GVT G SLSAD - WRGQ LR RF R LVLSR -- KVPGKADLPTP I EA L NEL R DRLEA SL 151
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1211956319 187 GA A RIDSINT D VNAFLSAV R EQM N YRQEQVLMSSG DY NE D EKLNR Q VV D PGID L K V HPSHIR 248
Cdd:pfam11130 152 RS A GLAARRL D PDDLIAWL R RWL N PDPSASWDPPA DY DP D KDIAE Q IL D SDPR L D V EAGRLY 213
Name
Accession
Description
Interval
E-value
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
26-868
0e+00
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 1542.75
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 26 N L SQT w DY P SLVAA LPYR Y YD DTNEI F V N AGSA GF IM EA A PL P GANE QVMA ALD D MLR K KLPR KT PL TVI L LA SK C VG E R 105
Cdd:PRK13721 1 V L GEM - SF P QFSRL LPYR D YD QESGL F M N DTTM GF ML EA I PL N GANE SIVE ALD H MLR T KLPR GI PL CIH L MS SK L VG D R 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 106 I DR G VSGDM W K G QM AE HL N K ITRA FWQ R S AL HG -- L ANEREY PL Y LR N YR I FI V Y GESL K RA S QTQ ri I DDLIQIRNT IR 183
Cdd:PRK13721 80 I EY G LREFS W S G EQ AE RF N A ITRA YYM R A AL TQ fp L PEGMNL PL T LR H YR V FI S Y CSPS K KK S RAD -- I LEMENLVKI IR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 184 V SL GA A R I DSINT D VN AF L S A VRE QM N Y R QEQVLMSSGDYNEDEK LN R Q V V DPGI DLKV HPSHIRMA L P E sidtrgt RLP 263
Cdd:PRK13721 158 A SL QG A S I TTQTV D AQ AF I S I VRE MI N H R PDSLYPKRRQLDPYSD LN Y Q C V EDSF DLKV RADYLTLG L R E ------- NGR 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 264 A S AC RI I N MQ L S KNP RRFA LWQ G ADN LQ NL RF P D L G I P CPF M LT W T T E L E E Q T K S QSEA FR K DT DL S KK ANSA YA AL FP G 343
Cdd:PRK13721 231 N S TA RI L N FH L A KNP EIAF LWQ M ADN YS NL LN P E L S I S CPF I LT L T L E V E D Q V K T QSEA NL K YM DL E KK SKTS YA KW FP S 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 344 TK K A A D EW RRT R EQ L N SN EIA L CNTYF N L T L F A PDNN TD A QAC E LAAV N V FRKN EL E MVTIQYQQ MRN W L AGF PF VMQ EG 423
Cdd:PRK13721 311 VE K E A K EW GEL R QR L G SN QSS L VSYFL N I T A F C PDNN ET A LEV E QDIL N S FRKN GF E LISPRFNH MRN F L TCL PF MAG EG 390
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 424 MWE DLK MT G ATL RA K S W N AVS LMP V VA ERQ L SNV G MPL PTYRNQ V AF F D M F GEENGS TN F N I AV T GTSGAGK SF L T Q GVL 503
Cdd:PRK13721 391 LFK DLK EA G VVQ RA E S F N VAN LMP L VA DNP L TPA G LLA PTYRNQ L AF I D I F FRGMNN TN Y N M AV C GTSGAGK TG L I Q PLI 470
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 504 R D VL NAN G Y A W V I DMGD S YK NY C HQA GGVYLDG AQ LRFNPFAN VR DI KH SAE G I VRL L T V L ASP TQP LD G V C E AI L QK AV 583
Cdd:PRK13721 471 R S VL DSG G F A V V F DMGD G YK SL C ENM GGVYLDG ET LRFNPFAN IT DI DQ SAE R I RDQ L S V M ASP NGN LD E V H E GL L LQ AV 550
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 584 MDA W EK K EHK ARIDDV HRY L TSEEVNTAF AD K PTI IA RL A E LAM LLD T Y CTW G PD GEYFN A D N P T L DGET R FA VLEL LS L 663
Cdd:PRK13721 551 RAS W LA K KNR ARIDDV VDF L KNARDSEQY AD S PTI RS RL D E MIV LLD Q Y TAN G TY GEYFN S D E P S L RDDA R MV VLEL GG L 630
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 664 ED K P K LL SSIL FSLI LA I QEK MY HS PR D LKK VCI IDE A WRLL GGS N PHAAR FIE T GYRT V RRH R GA F ITITQ G I K DF SAS 743
Cdd:PRK13721 631 ED R P S LL VAVM FSLI IY I ENR MY RT PR N LKK LNV IDE G WRLL DFK N HKVGE FIE K GYRT A RRH T GA Y ITITQ N I V DF DSD 710
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 744 K E --- A E AAW N NSS T KI T L L Q D A RA F KQ Y LADN PDQFS DM E KEV I R GF QP A LQTGY SS L L ISAGEY SS F HRLFVDP VT RA 820
Cdd:PRK13721 711 K A ssa A R AAW G NSS Y KI I L K Q S A KE F AK Y NQLY PDQFS PL E RDM I G GF GA A KDQWF SS F L LQVENH SS W HRLFVDP LS RA 790
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1211956319 821 M F SS R G E DF AYM Q NAQ K A G ATAE EA AYL LA E KKFG G E LRE LE E W VNAA 868
Cdd:PRK13721 791 M Y SS D G P DF EFV Q QKR K E G LSIH EA VWQ LA W KKFG P E MAS LE A W LEEH 838
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
40-853
0e+00
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 718.34
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 40 LPYR Y YD DTNE IF V N AG S A GF IM E AA PL P GA N E QVMAA L DDM LR KK LP RK T PLT V I L LA S KCV G ERI DR GVSGDMWK G QM 119
Cdd:TIGR02746 2 LPYR A YD EESG IF M N RH S M GF GL E LT PL S GA D E SLVES L SSL LR TD LP EG T DIQ V L L WG S PQI G PFL DR NEEQFSQN G GI 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 120 A E H L NKITRAFWQRS A LH G L an EREYPLY LR NY R I F IVY ge S LKRA S QTQRI I DD L IQI R NT I RVS L GA A RIDSINT D VN 199
Cdd:TIGR02746 82 L E K L ARNRVKYYLNA A QK G F -- FKNSGVT LR DF R L F LSV -- S IPFK S PNEDV I QE L RSL R ER I EST L RS A GFGCRRV D AE 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 200 AF LS A VRE QM N YRQEQVLMSSGD Y NEDEK L NR Q V VDP GI DL K VH PSHIRMALPESIDTRG TR lpasacr I INMQLSKN P R 279
Cdd:TIGR02746 158 DL LS L VRE ML N PDPDSIHPWPIS Y DPNQL L RD Q I VDP DT DL E VH EGGLEVDHEDNQGEVK TR ------- I RVFSIKRF P E 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 280 R F A LWQ GADNLQN L RF P D L G I P CPF M L TW T TEL E E Q T K SQSE A FR K DT DL S K K A N S AY A ALF P GTK K AAD E WRRT RE QLN 359
Cdd:TIGR02746 231 E F T LWQ TGNLIGD L LN P S L Q I T CPF L L SF T VRV E D Q V K KKAK A TA K AK DL N K Q A K S SM A KWV P SLE K KLK E IKYL RE AIA 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 360 S NEIA L CNT Y F N LT LF - A PDN NTDAQA cel AA VNV FRKN ELEMVTIQYQ Q MRNW LA GF PF VMQ EG MW EDLK MT G ATLRAK 438
Cdd:TIGR02746 311 S GGDS L VSM Y Y N VL LF t N PDN LRRDVE --- AA KSS FRKN GFDLAEDKRI Q LQAF LA AL PF NPT EG LF EDLK KA G RVRTLS 387
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 439 S W NAV S L M P VV A E - RQLSNV G MP LPT Y R N Q VAF FD M F ge ENG STN F NIAV T G T SGAGKSF LT Q GVLR D V L NAN G YA WVID 517
Cdd:TIGR02746 388 S A NAV N L L P LI A D w KGTKGS G LL LPT R R G Q LSA FD P F -- DSD STN Y NIAV V G G SGAGKSF FM Q ELIV D N L SRG G KV WVID 465
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 518 M G D SYK NY C HQA GG V Y LDGA --- QLRF NPF A -- NV RD I KHSAEG I VR L LTVL ASP TQP L DGVCEAI L QK A VMD AW EKKEH 592
Cdd:TIGR02746 466 V G R SYK KL C EML GG T Y IEFS pes NICL NPF T gn NV TE I DDEIDQ I TA L IALM ASP EGG L SDEQRST L EE A ILA AW KEYGN 545
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 593 K A R I D DV HRY L ts EEVNTAFA D K ptiia R LAE L AML L DT Y CTW G PD G E YFN AD N P t LD GET RF A VLEL LS LED K P K L LSS 672
Cdd:TIGR02746 546 E A T I T DV QDA L -- QQLEDDEN D P ----- R IKD L GKM L NP Y TSH G VY G R YFN GP N N - LD FSN RF V VLEL EE LED R P D L QAV 617
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 673 I LFSL ILA I QEK MY HS PR DLK K V CIIDEAW R LL G G S NP H AA R FIETGYR TV R RHR GAFITITQGI K DF SA S K EA E AA WN N 752
Cdd:TIGR02746 618 V LFSL MVR I TGE MY LT PR KRR K I CIIDEAW S LL D G A NP Q AA D FIETGYR RA R KYG GAFITITQGI E DF YS S P EA R AA YA N 697
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 753 S ST KI T L L Q D A RAFKQYL A D NP DQ FS DM EK EV I RGF q PALQTGY S S LLI SA GE Y SS F HRLFVDP VT R AM FS SR G ED F AYM 832
Cdd:TIGR02746 698 S DW KI I L R Q S A ESIAKLK A E NP FT FS PF EK RL I KSL - RTAKGAF S E LLI RS GE G SS V HRLFVDP FS R VL FS TD G PE F EEV 776
810 820
....*....|....*....|.
gi 1211956319 833 QNAQKA G ATA EEA AYL LA E K K 853
Cdd:TIGR02746 777 EELREQ G LSL EEA IEQ LA Q K H 797
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
298-833
3.50e-107
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 340.77
E-value: 3.50e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 298 L GI PC P F ML T WTTELEEQTKSQSEAF RK DTD L SK K AN S AY A ALFPGTKKA A DEWRRTREQ L N S NEIA L CNTYFN LT L FA P 377
Cdd:COG3451 31 L QL PC E F IV T QSFTPLDKDEALKKLK RK RRR L ES K RK S EQ A LVDDDAESQ A EDAEEALDE L Q S GGER L GEVHLT LT V FA D 110
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 378 D NNTDAQ A CE l AAVNVFRKNELEM V TIQYQ Q MRNW L AGF P FVMQE gmwe D L KMTGA T lrak SW N AVS L M P VVAERQLSNV 457
Cdd:COG3451 111 D LEELEE A VR - EVESALQSAGFTL V RETLN Q EEAF L SSL P GNFDY ---- R L RRRLL T ---- TS N LAA L F P FHSFELGDPW 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 458 G - MP L P T YRNQVA FFD MF gee N G ST N F N IAVT G T SG A GKSFL TQGV L RDV L NANGYAWVI D M G D SY KNYCHQA GG V Y L D - 535
Cdd:COG3451 182 G i YL L N T RSGTPV FFD FH --- D G LD N G N TLIL G P SG S GKSFL LKLL L LQL L RYGARIVIF D P G G SY EILVRAL GG T Y I D l 258
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 536 -- G AQLRF NPF A n VR D IKHSAEGIVR LL TV L AS - PTQ PL DGVCE A ILQK AV MDAWEKKEHKA R -- ID D VHRY L TSEE vnt 610
Cdd:COG3451 259 sp G SPTGL NPF D - LE D TEEKRDFLLE LL EL L LG r EGE PL TPEER A AIDR AV RALYRRADPEE R tt LS D LYEL L KEQP --- 334
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 611 afadkptiia RLAE LA ML L DT Y CTW G PD G EY F NADNPTLDGET RF A V LE L LS L E D K P K L LSSI L FS L ILA I QEKMYHSPR 690
Cdd:COG3451 335 ---------- EAKD LA AR L EP Y TKG G SY G WL F DGPTNLDLSDA RF V V FD L TE L L D N P E L RPPV L LY L LHR I WNRLRKNND 404
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 691 DLKKVCI IDEAW R LL gg S NP HA A R F I E TGYR T V R RHR GA F I TI TQ GIK DF SA S KE AEA AWN NS S TKI T L L Q DARAFKQ Y L 770
Cdd:COG3451 405 GRPTLIV IDEAW L LL -- D NP AF A E F L E EWLK T L R KYN GA V I FA TQ SVE DF LS S PI AEA IIE NS A TKI L L P Q PKADIED Y A 482
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1211956319 771 adnp DQF -- S DM E K E V IR G fqpa LQT G YSSL LI SA G EY S SFH RL FVD P VTR A MF S SRG E DF A YMQ 833
Cdd:COG3451 483 ---- ELL gl S ER E L E L IR S ---- AGR G KRDF LI KQ G NG S VVF RL DLS P EEL A LL S TKP E EV A ILD 539
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
34-248
1.33e-33
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 129.32
E-value: 1.33e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 34 PS LVAA LPY RY YD DTNEI F V N A - GS A GF IM E AA PL P GA N E Q V MAA L DDM L RKK LP RK TP LTVI L L AS KCV G ERI DR gvsg 112
Cdd:pfam11130 1 PS FSDL LPY VA YD PETGL F L N E d GS V GF VF E LS PL G GA D E S V RDT L ESL L SDD LP DG TP VQFL L F AS PDI G PYL DR ---- 76
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 113 dm WK ---- G QMAE HL NK I T -- R AFWQR S ALH G LANER e YPLY LR NY R IFIVY ge SLKRASQTQRI I DD L IQI R NTIRV SL 186
Cdd:pfam11130 77 -- LR dyrl G EQGG HL RA I A rp R GLFLD S GVT G SLSAD - WRGQ LR RF R LVLSR -- KVPGKADLPTP I EA L NEL R DRLEA SL 151
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1211956319 187 GA A RIDSINT D VNAFLSAV R EQM N YRQEQVLMSSG DY NE D EKLNR Q VV D PGID L K V HPSHIR 248
Cdd:pfam11130 152 RS A GLAARRL D PDDLIAWL R RWL N PDPSASWDPPA DY DP D KDIAE Q IL D SDPR L D V EAGRLY 213
P-loop_TraG
pfam19044 TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation ...
481-761
3.48e-17
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation protein.
Pssm-ID: 436917 [Multi-domain]
Cd Length: 413
Bit Score: 84.88
E-value: 3.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 481 TN F N IAVT G T SG A GKSF L T QGVL R DVLNANGYAWVI D M G D SYK NY C HQA GG V Y L --- DGAQL RFNPF ---- AN V R D IK h S 553
Cdd:pfam19044 28 TN R N KFIL G P SG S GKSF F T NHMV R SYYEQGAHVVLV D V G H SYK GL C ELV GG Y Y F tys EENPI RFNPF yigd GD V L D TE - K 106
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 554 A E G I VR LL TV L ----- A S P T QP ldgvc E AI - L QK A VMDAW E KK E HKAR I ------------ D DVHRY L TSEE V N tafa D K 615
Cdd:pfam19044 107 K E S I KT LL LA L wkkdd E S F T RS ----- E YV a L SN A LTLYY E HL E KDPD I fpcfntfyeflr D EYLKV L EEDK V K ---- E K 177
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 616 PTI I ARL ae L AM L LDT Y ctwg PD GE Y --- F NA D - N PT L DG E t RF A V L EL LSLE D K P kllss ILF SLI - LA I Q E ---- KM y 686
Cdd:pfam19044 178 DFD I DNF -- L YV L RPY Y ---- KG GE F dyl L NA T e N LD L LN E - RF I V F EL DNIK D H P ----- ILF PVV t II I M E vfis KM - 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 687 hsp R D LK --- K VCI I D EAW RLLGGSN ph A A RF I ETGYR TVR RHR G AF I TI TQ GIK D FSA S --- K ea E A AW NNS ST KI T L L 760
Cdd:pfam19044 245 --- R K LK gir K MIL I E EAW KAIAKEG -- M A EY I KYLFK TVR KFF G EA I VV TQ EVD D IIS S piv K -- D A II NNS DC KI L L D 317
.
gi 1211956319 761 Q 761
Cdd:pfam19044 318 Q 318
HerA
COG0433 Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ...
485-796
2.15e-11
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain]
Cd Length: 388
Bit Score: 66.55
E-value: 2.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 485 I AVT G TS G A GKS FLT Q GV L RDVLN A NGYAW V I D MGDS Y KNYCHQAG ----- GV Y -- LD G AQ L RF NP F anvr D IKHS A EGI 557
Cdd:COG0433 50 I LIL G AT G S GKS NTL Q VL L EELSR A GVPVL V F D PHGE Y SGLAEPGA eradv GV F dp GA G RP L PI NP W ---- D LFAT A SEL 125
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 558 VR LL TVLASPTQPL dgvc EAI L QK A VMD A WE K KEHKARID D VHRY L TSE E VNTAF --- ADKPTII A R L AE L AM L LDTYCT 634
Cdd:COG0433 126 GP LL LSRLDLNDTQ ---- RGV L RE A LRL A DD K GLLLLDLK D LIAL L EEG E ELGEE ygn VSAASAG A L L RR L ES L ESADGL 201
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 635 W G PD G EYFNA dnp T L DGET R FA V LE L LS L ED kp K L L S SILFS L ILAIQ E KMYHSPRDLKK ---- V CI IDEA WR L LGGSNP 710
Cdd:COG0433 202 F G EP G LDLED --- L L RTDG R VT V ID L SG L PE -- E L Q S TFVLW L LRELF E ARPEVGDADDR klpl V LV IDEA HL L APAAPS 276
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 711 HAARFI E tgy R TV R -- R HR G AFIT - I TQ GIK D FS askea E AAWNNSS T K I T L LQDARAFKQYLADNPDQF S DMEK E VI rg 787
Cdd:COG0433 277 ALLEIL E --- R IA R eg R KF G VGLI l A TQ RPS D ID ----- E DVLSQLG T Q I I L RLFNPRDQKAVKAAAETL S EDLL E RL -- 346
....*....
gi 1211956319 788 fq P A L Q TG Y 796
Cdd:COG0433 347 -- P S L G TG E 353
DUF5934
pfam19357 Family of unknown function (DUF5934); This presumed domain found in type IV secretion system ...
295-462
2.21e-10
Family of unknown function (DUF5934); This presumed domain found in type IV secretion system proteins is functionally uncharacterized. This domain family is found in proteobacteria, and is approximately 170 amino acids in length. The family is found in association with pfam11130. There are two conserved sequence motifs: GWDL and QGEY.
Pssm-ID: 437189 [Multi-domain]
Cd Length: 172
Bit Score: 60.49
E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 295 FPD L GI PCP FMLTWTTELEE Q TKSQ S E A FR K DTDLSKK A N S AY A ALF P GT K KAAD EW RRTREQ L NSNE i A L CNTYFNL T L 374
Cdd:pfam19357 6 NDK L RL PCP VATSLCLVYPD Q EAAS S K A GY K FMRTTSL A D S KS A RFL P QL K EQSA EW QHVQDE L RQGR - K L VRAFYSV T A 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 375 F A P DNNT D aq A C E LAAVN V FRKNELEMVTIQ Y Q Q MRNW LA GF P FVMQE G MWE DL K mtgatl R A K ------ SWN A VSLM P V 448
Cdd:pfam19357 85 F S P KGKG D -- A H E RTLKS V YKAAGWDLIDER Y L Q IMGL LA AM P LTLAD G LAS DL E ------ R M K rfrtml TTT A ANIA P L 156
170
....*....|....
gi 1211956319 449 VA E R qlsn V G M P L P 462
Cdd:pfam19357 157 QG E Y ---- L G G P I P 166
AAA_10
pfam12846 AAA-like domain; This family of domains contain a P-loop motif that is characteriztic of the ...
480-781
6.96e-07
AAA-like domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins, including VirB4 components of the Type IV secretory pathway and conjugal transfer protein TrbE. This entry includes the arcaheal Vir4/HerA homolog CedB, a membrane-bound protein that is highly induced upon UV treatment and essential for DNA transfer between Sulfolobus cells.
Pssm-ID: 315512 [Multi-domain]
Cd Length: 362
Bit Score: 52.40
E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 480 STNFNI A VT G TS G A GKS F L TQGVLRDVLNAN G Y A WV ID ---- M G DSYKN --- YC H QAGG V Y LD G --- AQLRFN P --- FAN 546
Cdd:pfam12846 19 TNAPHS A II G DL G G GKS V L NKTLFYYIVLLG G K A LY ID pkke R G QWKET lpe IA H EINF V T LD S ete NHGLLD P ivl LPR 98
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 547 VRDIKHS A EG I VRL LT vlas PTQPL D GVCEAI L Q KAV M daw EKK E H K A R ----- I DDVHR yl TSEEVNTAF AD KPTIIAR 621
Cdd:pfam12846 99 EKEAEST A ID I LTN LT ---- GDSSR D DEKFPA L R KAV E --- AVT E G K Q R gllav I EELRK -- EDPKAARNI AD HLESVVD 169
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 622 LAELAM L LD tyctwgp DG EYF NA D np TLDGETRFAVL E L L S L E DK --------- PK LLS SILFSL I LAIQEKMYH S P R DL 692
Cdd:pfam12846 170 GSLAHL L FS ------- DG RVE NA I -- SFEKQVTILEV E D L D L P DK aerferltt EQ LLS VSMMFV I GTFAREFGS S D R KE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 693 K KV CII DEAW RLL gg S NPHAARFIETGY R TV R RHRG A FITI TQ GIK D FSASKEA eaaw NN SST K ITL - LQ D ARAF K QY L - 770
Cdd:pfam12846 241 F KV VFF DEAW IFT -- S SAQGKTLLKELV R IG R SYNA A VYLV TQ SAD D VLDEGLK ---- NN IGY K FAF r ST D KNEI K KV L e 314
330
....*....|....*....
gi 1211956319 771 -------- AD N PDQFSDM E 781
Cdd:pfam12846 315 flgldvnd EN N QKRLRSL E 333
VirD4
COG3505 Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ...
484-759
4.92e-06
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain]
Cd Length: 402
Bit Score: 49.98
E-value: 4.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 484 NIA V T G TS G A GK sfl T Q G VLRDV L N -- A N G YAW V I - D M - GD SYKN --- YCHQ AG G -- VYL D ---- GAQL R F NP FANV R -- 548
Cdd:COG3505 1 HVL V I G PT G S GK --- T V G LVIPN L T ql A R G ESV V V t D P k GD LAEL tag FRRR AG Y dv YVF D pfdp ERSH R W NP LDEI R dp 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 549 - D IKHS AE GIVRL L TVLASPTQPLDGVCE A I L QKAVMDAW E KKEHK ar ID DV H R Y L TS eevntafa DKPTIIAR L AE L AM 627
Cdd:COG3505 78 a D AQEL AE ALIPA L GGGGGGDPFWREAAR A L L AALILALA E EGRRT -- LA DV Y R L L SE -------- PEEELREL L EA L PE 147
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 628 LLDTYCTWGP d GEYF NA DNP T LDG -- E T RFAV LELLS LE ----------------- DKP --------------- KL L SSI 673
Cdd:COG3505 148 SPHPPVADTL - AAFL NA AEK T RSS vl S T LASA LELLS DP evaaltsgsdfdlrdli REK gtlylvlppddlstl AP L LRL 226
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211956319 674 L F S LILAIQEKMYHSPRD L KK -- VCII DE A wrllgg S N PHAARFI ET GYR T V R RHRGAFIT I T Q GIKDFS A --- SKE AE A 748
Cdd:COG3505 227 L L S QLIRALLRRAERSGR L PR pv LLLL DE F ------ A N LGRLPSL ET LLA T G R GYGIRLVL I L Q SLAQLE A iyg EEG AE T 300
330
....*....|.
gi 1211956319 749 AWN N SS TKI T L 759
Cdd:COG3505 301 ILG N CG TKI F L 311
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
