|
Name |
Accession |
Description |
Interval |
E-value |
| MATE_Wzx_like |
cd13128 |
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ... |
15-392 |
1.40e-47 |
|
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240533 [Multi-domain] Cd Length: 402 Bit Score: 169.26 E-value: 1.40e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 15 FGAKIARIITNALLLVILTRFLfTTDQYGLLYTVISVVGVASMFATLGLPSSAARYVAEYtetDPSQVPRILKTSVLFVL 94
Cdd:cd13128 9 FVGNIISKLLGFLVRVYLARYL-GPEGFGILSLALAFVGLFSIFADLGLPTALVREIARY---RKEKIREIISTSLVLKL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 95 GFGLLTAVVLAVFNDQIASLVGEAAVapLLFVAAVYVIFESLHKYLTGIFQGLNEIALSAVINTIAQVGRLVFAVSLVVV 174
Cdd:cd13128 85 ILGILALLLLFLFAFLIAFYDPELVL--LLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVLL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 175 GYGVWGALAGYLLGFVLSVTIGGWLLYSRFYRtlPSASETEEGLVRRILEYSVPLTATRGSTVIDKKVDTILVTALAGLT 254
Cdd:cd13128 163 GGGLIGFALAYLIASVLSAILLLYIYRKKILL--PKFFSFDLKLAKELLRFSIPLALSGIFSLIYTRIDTIMLGYFLGDA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 255 PAAFYAVAKQVADACVSPASSLGYTISPAFGEEKAGDRlERAARLYEYSLEHVLIFYIPATVGLFLVAEPMLRHVFGAEY 334
Cdd:cd13128 241 AVGIYNAAYRIAELLLFIPSAISTALFPRISELYKNDK-DELKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLLFGEEY 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1221536480 335 LGATTVIQIFSLFILANAINKITTDGLDYLGRARIRAIFKGGMAVSNVLLNLLLIPVY 392
Cdd:cd13128 320 LPAALVLQILAWGFLFIFLNGIFGSILQAIGKQKLTLKILLIGALLNVILNLLLIPKY 377
|
|
| RfbX |
COG2244 |
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ... |
6-413 |
2.02e-37 |
|
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441845 [Multi-domain] Cd Length: 366 Bit Score: 140.85 E-value: 2.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 6 RIAYGVKASFGAKIARIITNALLLVILTRFLfTTDQYGLLYTVISVVGVASMFATLGLPSSAARYVAEYTETDpsqVPRI 85
Cdd:COG2244 3 KLLKNTLWLLLGQLLGALLGFLLLPLLARLL-GPEEYGLFALALSIVALLSVLADLGLSTALVRFIAEYREEE---LRRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 86 LKTSVLFVLGFGLLTAVVLAVFNDQIASLVGEAAVAPLLFVAAVYVIFESLHKYLTGIFQGLNEIALSAVINTIAQVGRL 165
Cdd:COG2244 79 LSTALLLRLLLSLLLALLLLLLAPFIAALLGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLSL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 166 VFAVSLVVVGYGVWGAlagyllgfvlsvtiggwllysrfyrtlpsaseteeglvrrILEYSVPLTATRGSTVIDKKVDTI 245
Cdd:COG2244 159 LLALLLALLGLGLWGL----------------------------------------VLKYSLPLLLSGLLGLLLTNLDRL 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 246 LVTALAGLTPAAFYAVAKQVADACVSPASSLGYTISPAFGEEKAGDRLERAARLYEYSLEHVLIFYIPATVGLFLVAEPM 325
Cdd:COG2244 199 LLGALLGPAAVGIYSAAYRLASLLLLLITALSQVLFPRLSRLLAEGDREELRRLYRKALRLLLLLGLPLALGLALLAPPL 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 326 LRHVFGAEYLGATTVIQIFSLFILANAINKITTDGLDYLGRARIRAIFKGGMAVSNVLLNLLLIPVYGAAGAAAATAVTF 405
Cdd:COG2244 279 LSLLFGPEYAEAAPVLPILALGALFLALSGVLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIPRYGLVGAAIATLLSY 358
|
....*...
gi 1221536480 406 GSYTLLCV 413
Cdd:COG2244 359 LVLLLLLL 366
|
|
| MATE_tuaB_like |
cd13127 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
7-369 |
3.41e-26 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240532 [Multi-domain] Cd Length: 406 Bit Score: 110.27 E-value: 3.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 7 IAYGVKASFGAKIARIITNALLLVILTRFLfTTDQYGLLYTVISVVGVASMFATLGLpSSAARYVAEYTETDPSQVpril 86
Cdd:cd13127 1 AVSGAFWSAISQVVVQLLQFVVTIILARLL-TPEDFGLVAMATVFIAFAQLFSDLGL-SSALIQRKDLTEEDLSTV---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 87 ktsVLFVLGFGLLTAVVLAVFNDQIASLVGEAAVAPLLFVAAVYVIFESLhkylTGIFQGLNEIALS----AVINTIAQV 162
Cdd:cd13127 75 ---FWLNLLLGLLLYLLLFLLAPLIAAFYNEPELIPLLRVLSLSFLLSGL----GSVPRALLQRELRfkklAIIELISTL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 163 GRLVFAVSLVVVGYGVWGALAGYLLGFVLSvTIGGWLLYSRFYRTLPSASEteeglVRRILEYSVPLTATRGSTVIDKKV 242
Cdd:cd13127 148 VSGVVAIVLALLGFGVWALVAQQLVGALVS-TVLLWILSRWRPRLSFSLAS-----LKELLSFGSKLLGSNLLNYFSRNL 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 243 DTILVTALAGLTPAAFYAVAKQVADAcvsPASSLGYTIS----PAFGEEKagDRLERAARLYEYSLEHVLIFYIPATVGL 318
Cdd:cd13127 222 DNLIIGKFLGAAALGYYSRAYRLALL---PVQNITGPITrvlfPALSRLQ--DDPERLRRAYLKALRLLALITFPLMVGL 296
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1221536480 319 FLVAEPMLRHVFGAEYLGATTVIQIFSLFILANAINKITTDGLDYLGRARI 369
Cdd:cd13127 297 ALLAEPLVLLLLGEKWLPAVPILQILALAGLFQPLSSLNGSLLLALGRTDL 347
|
|
| SpoVB |
COG5841 |
Stage V sporulation protein SpoVB/SpoIIIF, required for spore cortex synthesis [Cell cycle ... |
57-484 |
5.41e-25 |
|
Stage V sporulation protein SpoVB/SpoIIIF, required for spore cortex synthesis [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444543 [Multi-domain] Cd Length: 532 Bit Score: 107.94 E-value: 5.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 57 MFATLGLPSSAARYVAEY-TETDPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIAS-LVGEAAVAPLLFVAAVYVIFE 134
Cdd:COG5841 55 TLATAGIPVAISKLVAEYnALGDYKGARRIFRVSLLLLLILGLVFFLLLFFGAPFIARlLLGDPRAYYSLRALAPALLIV 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 135 SLHKYLTGIFQGLNEIALSAVINTIAQVGRLVFAVSLVV----------VGYGVWGALAGYLLGFVLSVTIggWLLYSRF 204
Cdd:COG5841 135 PVMSVLRGYFQGLQNMTPTAVSQVIEQIVRVIFILLLAYlllpygleyaAAGATFGAVIGALAGLLVLLYY--YRKRKKK 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 205 YRTLPSASETEE-----GLVRRILEYSVPLTATRGSTVIDKKVDTILVT---ALAGLTPA---AFYAVAKQVADACV--- 270
Cdd:COG5841 213 LKRLLEKSKTKSkesskDILKELLRIAIPITLSSLVLPLFQLIDSFTVPrrlQAAGLSASeatSLYGILSGMAQPLVnlp 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 271 -SPASSLGYTISPAFGEEKAGDRLERAARLYEYSLEHVLIFYIPATVGLFLVAEPMLRHVFGAEylGATTVIQIFSLFIL 349
Cdd:COG5841 293 tVLATALATSLVPAISEAFAKKDRKLVRRRINQALRLTLLIGLPAAVGLAVLAEPINTLLFGNP--EGGGILAILAPSAI 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 350 ANAINKITTDGLDYLGRARIRAIFKGGMAVSNVLLNLLLIPVYGAAGAAAATAVTFGSYTLLCVYIMTTELPIQFsNVTH 429
Cdd:COG5841 371 FLSLQQVTTGILQGLGKQKIPVINLLIGLLVKIILNYLLVPLFGIYGAALATVIGYLVAAILNLAALKKYTGFKL-DLRR 449
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1221536480 430 SITRIFVIAGVMGVGVQLLLPYVTGV---------LTLLVVVAAGGGIWLLLSAAWGVIDIEQL 484
Cdd:COG5841 450 RLLKPLLASLIMGIVVLLLYRLLSLFlpesrlgalLATLIAVLVGAIVYLLLLLKLGLITKEEL 513
|
|
| MATE_SpoVB_like |
cd13124 |
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related ... |
42-369 |
8.25e-20 |
|
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins; The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240529 [Multi-domain] Cd Length: 434 Bit Score: 91.76 E-value: 8.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 42 YGLLYTVIsvvGVASMFATLGLPSSAARYVAEYTET-DPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIASLV-GEAA 119
Cdd:cd13124 33 YQMAYPIY---GIFLTLATAGIPVAISKLVAEYNALgDYKGARRIFRVSLILLLILGLVFFLLLFFGAPFLAQLLlGDPR 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 120 VAPLLFVAAVYVIFESLHKYLTGIFQGLNEIALSAVINTIAQVGR----LVFAVSLVVVGYGV--------WGALAGYLL 187
Cdd:cd13124 110 LAPVIRALAPAILIVPLLSVLRGYFQGLQNMTPTAVSQVIEQIVRviviLVLAYLLLPVGGGLyyaaagatFGAVIGALA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 188 GFVLSVTIggWLLYSRFYRTLPSASETEEG----LVRRILEYSVPLTATRGSTVIDKKVDTILVT---ALAGLTPA---A 257
Cdd:cd13124 190 GLLVLLYY--YRKKRRELKRLLRKSPRSKIstkeILKELLSYAIPITLSSLILPLLQLIDSFTVPrrlQAAGLSESeatA 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 258 FYAVAKQVADACV----SPASSLGYTISPAFGEEKAGDRLERAARLYEYSLEHVLIFYIPATVGLFLVAEPMLRHVFGAE 333
Cdd:cd13124 268 LYGILTGRAQPLVqlptVIATALSTSLVPAISEAYAKGDKKELRRRINQALRLTLLIGLPAAVGLAVLAEPINTLLFGDS 347
|
330 340 350
....*....|....*....|....*....|....*.
gi 1221536480 334 ylGATTVIQIFSLFILANAINKITTDGLDYLGRARI 369
Cdd:cd13124 348 --EGGLILQILAPSILFLSLQQVTAAILQGLGKVKI 381
|
|
| Polysacc_synt |
pfam01943 |
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. ... |
29-266 |
5.70e-17 |
|
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Pssm-ID: 426523 [Multi-domain] Cd Length: 274 Bit Score: 80.81 E-value: 5.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 29 LVILTRFLfTTDQYGLLYTVISVVGVASMFATLGLPSSAARYVAEYTETdpsqvpRILKTSVLFVLGFGLLTAVVLAVFN 108
Cdd:pfam01943 23 LPYLARIL-GPEGFGLYAFALAFVGLLTIFTDFGFNAALVREIAKYREK------YELVSLYWLNALLVKLVLVLLFLLL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 109 DQIASLVGEAAVAPLLFVAAV-YVIFESLHKYLTGIFQGLNEIALSAVINTIAQVGRLVFAVSLVVVGYGVWGALAGYLL 187
Cdd:pfam01943 96 PLIAAFLGLPELAVLYRILALmFLLLPGVVQFRRGLFQGLERMKYALISQIVESLSRVILVFIAVFLPGDIVAALLYQVL 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1221536480 188 GFVLSVTIGGWLLYSRFYRTLPSASeteEGLVRRILEYSVPLTATRGSTVIDKKVDTILVTALAGLTPAAFYAVAKQVA 266
Cdd:pfam01943 176 AALVGGIIALAVLRKIFRPRFVFPS---LKLVRKLLSFGAPLFISSLAISLYTYIDSILLGLLLGAGAVGIYNAAYQLL 251
|
|
| Polysacc_synt_3 |
pfam13440 |
Polysaccharide biosynthesis protein; |
31-337 |
1.91e-14 |
|
Polysaccharide biosynthesis protein;
Pssm-ID: 404342 [Multi-domain] Cd Length: 293 Bit Score: 73.78 E-value: 1.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 31 ILTRFLfTTDQYGLLYTVISVVGVASMFATLGLpSSAARYVAEYTETDpsqvpriLKTSVLFVLGFGLLTAVVLAVFNDQ 110
Cdd:pfam13440 1 VLARLL-SPEDFGVVAIATVVISFANIFVDMGF-SSALIQKKDITETD-------YSTVFTFNLIFGALIYLILFALAPL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 111 IASLVGEAAVAPLLFVAAVYVIFESLHKYLTGIFQGLNEIALSAVINTIAQVGRLVFAVSLVVVGYGVWGALAGYLLGFV 190
Cdd:pfam13440 72 IASFYNQPELVPVLRVLALVLILNGLSSVQTALLRRDLRFKKLFKITLTSSVIGGIVGIVLAYLGFGVWALVIGTLAQQL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 191 LSvTIGGWLLYSRFYRTLPSASETeeglvRRILEYSVPLTATRGSTVIDKKVDTILVTALAGLTPAAFYAVAKQVADacv 270
Cdd:pfam13440 152 LS-LVLLWLASDWRPRLTFSLKVI-----KELFSFGSWLLLSNLLNYLARNLDNLIIGKVLGTAALGLYSVAYRLAL--- 222
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1221536480 271 SPASSLGYTIS----PAFGeeKAGDRLERAARLYEYSLEHVLIFYIPATVGLFLVAEPMLRHVFGAEYLGA 337
Cdd:pfam13440 223 LPTANITSVITkvlfPALS--RIQDDKAKLRELYLRVLRLIAFIVFPIMAGLAVVAEPLVLVLLGSQWLES 291
|
|
| MATE_like_10 |
cd13125 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
42-227 |
7.28e-12 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240530 [Multi-domain] Cd Length: 409 Bit Score: 67.18 E-value: 7.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 42 YGLLYTVISVVGVASMFATLGLPSSAARYVAEYtETDPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIASLVGEAAVA 121
Cdd:cd13125 33 VALLGQLQNFVTILQTIAGGGINNGVVKYTAEY-KDDEEKLARVWSTAFRITLILSILGGLLLLLFSKPLSSLLFGDIDY 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 122 PLLF-VAAVYVIFESLHKYLTGIFQGLNEIALSAVINTIAQVGRLVFAVSLVVVgYGVWGALAGYLLGFVLSVTIGGWLL 200
Cdd:cd13125 112 SWVFiLLGLALPLFALNNLLLAILNGLKEIKRYALINIISSLIGLLVSVLLVYF-YGLKGALLALVLNQSLIFLVTLIYS 190
|
170 180
....*....|....*....|....*...
gi 1221536480 201 YSRFYRTLPS-ASETEEGLVRRILEYSV 227
Cdd:cd13125 191 RKQPWFKLKYlWGRLDKDIIKKLLKFSL 218
|
|
| MATE_epsE_like |
cd13129 |
Multidrug and toxic compound extrusion family and similar proteins; This model represents a ... |
2-343 |
4.67e-11 |
|
Multidrug and toxic compound extrusion family and similar proteins; This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins, including Ralstonia solanaceraum GMI1000 epsE, which may be involved in exporting exopolysaccharide EPS I, a virulence factor. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240534 [Multi-domain] Cd Length: 411 Bit Score: 64.43 E-value: 4.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 2 SFSDRIAYGVKASFGAKIARIITNALLLVILTRflfttDQYGLLYTVISVVGVASMFATLGLPSSAARYVAEYTETDPSQ 81
Cdd:cd13129 1 SFASGSFWSLGGLVASRGAVFLTNIMVARSLGK-----HVFGEFGVIQVTIGLLGTFAGFGLGLAATKVIAETKDVDPER 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 82 VPRILKTSVLFVLGFGLLTAVVLAVFNDQIA-SLVGEAAVAPLLFVAAVYVIFESLHKYLTGIFQGLNEIALSAVINTIA 160
Cdd:cd13129 76 AGRIIGLSILLAVVTGALAATVLFLSATWIAiATLNAPHLAELLRIAAIILILTAFTGAQTGFLSGFEAFRAIARVNIWA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 161 QvgrlvFAVSLVVVGYGVWGALAGYLLGFVLSVTIGGWLLYSRFYRT-----LPSASETEEGLVRRILEYSVP--LTATR 233
Cdd:cd13129 156 G-----LLLLPLMWIGVYIRGLVGAVVILLASAAGNVASNSLILRREcqnqrGPVRTGLTWQELRVLFKFSLPsvLSGSM 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 234 GSTViDKKVDTILVTALAGLTPAAFYAVAKQVADACVSPASSLGYTISPAFGEEkAGDRLERAARLYEYSLEHVLIFYIP 313
Cdd:cd13129 231 GSPV-HWIALAILVNQPNGYAELGLFNAANQWRQFITFLPATLGNVALPFLAEN-FGNNEGMFRQTFRSALLFGLGLSLP 308
|
330 340 350
....*....|....*....|....*....|
gi 1221536480 314 ATVgLFLVAEPMLRHVFGAEYLGATTVIQI 343
Cdd:cd13129 309 LGC-VFILASQIFAWLYGKEYGSAAASMRS 337
|
|
| MATE_like |
cd12082 |
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ... |
47-373 |
8.80e-10 |
|
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240527 [Multi-domain] Cd Length: 420 Bit Score: 60.42 E-value: 8.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 47 TVISVVGVASMFATLGLPSSAARYVAEY-TETDPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIASLVG-EAAVAPL- 123
Cdd:cd12082 34 GLAFPLIALLIALGVGLSVGTSALISQAiGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGaEEEVIELa 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 124 ---LFVAAVYVIFESLHKYLTGIFQGLNEIALSAVINTIAQVGRLVFAVSLVV----VGYGVWGALAGYLLGFVLSVTIG 196
Cdd:cd12082 114 atyLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFglgpPELGIAGAALATVISYVIGALLL 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 197 GWLLYSRFYRTLPSASETEEGL--VRRILEYSVPLTATRGSTVIDKKVDTILVTALAGLTPAAFYAVAKQVADACVSPAS 274
Cdd:cd12082 194 LIYLRKGKKILKFKLSLLKPDLelLRRLLRIGLPSAIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRIASLAFMPAL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 275 SLGYTISPAFGEEKAGDRLERAARLYEYSLEHVLIFYIPATVGLFLVAEPMLRH-VFGAEYLGATTVI-QIFSLFILANA 352
Cdd:cd12082 274 GLAQAALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSLfTNDPEFLELAVSYlRILAIYYLFVG 353
|
330 340
....*....|....*....|.
gi 1221536480 353 INKITTDGLDYLGRARIRAIF 373
Cdd:cd12082 354 IGYVLQAGFQAAGRTLKSLIV 374
|
|
| PRK10459 |
PRK10459 |
MOP flippase family protein; |
1-472 |
1.55e-09 |
|
MOP flippase family protein;
Pssm-ID: 236697 [Multi-domain] Cd Length: 492 Bit Score: 60.05 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 1 MSFSDRIAYGVKASFGAKIARIITNALLLVILTRFLfTTDQYGLLYTVISVVGVASMFATLGLpssAARYVAEYTETDPS 80
Cdd:PRK10459 1 MSLREKTISGAKWTAISTVIIIGLQLVQLTVLARIL-DNHQFGLLTMSLVIIGFADTLSDMGI---GASIIQRQDISHLQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 81 QvprilktSVLFVLGFGLLTAVVLAVF--NDQIASLVGEAAVAPLLFVAAVYVIFESLHKYLTGIFQGLNEIALSAVINT 158
Cdd:PRK10459 77 L-------STLYWLNVGLGIVVFVLVFllSPLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 159 IAQVGRLVFAVSLVVVGYGVWGALAGYLLGFVlSVTIGGWLLYSRFYRTLPSASETEeglVRRILEYSVPLTATRGSTVI 238
Cdd:PRK10459 150 SAVVAGFTFAVVSAFFWPGALAAILGYLVNSS-VRTLLFGYFGRKIYRPALHFSLAS---VKPNLSFGAWQTAERIINYL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 239 DKKVDTILVTALAGLTPAAFYAVAKQVAdacVSPASSLGYTIS----PAFGEEKAGDRLERAARLYEYSLEHVLIFyiPA 314
Cdd:PRK10459 226 NTNIDTILIGRILGAEVLGGYNLAYNVA---TVPPMKINPIITrvafPVFAKIQDDTEKLRVGFLKLLSVLGIINF--PL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 315 TVGLFLVAEPMLRHVFGAEYLGATTVIQIFSLF-ILANAINKIttdGLDYLGRARIRAIFKggmavSNVLLNLLLIP-VY 392
Cdd:PRK10459 301 LLGLMVVSNNFVPLVFGEKWNSAIPILQLLCIVgLLRSVGNPI---GSLLLAKGRADLSFK-----WNVFKTFLFIPaIV 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 393 GAAGAAAATAVTFG------SYTLLCVYIMTTE-LPIQFSNVTHSITRIFVIAGVMGVGVQLLLPYVTG----VLTLLVV 461
Cdd:PRK10459 373 IGGQLAGLIGVALGfllvqiINTILSYFLMIKPvIGLSYRQYILSIWKPFYLSLPMLIVSYGLGLLLKGhlalGMLLAVQ 452
|
490
....*....|.
gi 1221536480 462 VAAGGGIWLLL 472
Cdd:PRK10459 453 VAAGVLAYLLM 463
|
|
| NorM |
COG0534 |
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms]; |
78-199 |
1.19e-07 |
|
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];
Pssm-ID: 440300 [Multi-domain] Cd Length: 427 Bit Score: 53.99 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 78 DPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIASLVGE-----AAVAPLLFVAAVYVIFESLHKYLTGIFQGLNEIAL 152
Cdd:COG0534 300 DYDRARRAARLALLLALGIGLLLALLLFLFPEPIIGLFTDdpeviALAATYLRIAALFQPFDGLQFVLSGALRGAGDTRF 379
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1221536480 153 SAVINTIAQVG-RLVFAVSLVVVGYGVWGALAGYLLGFVLSVTIGGWL 199
Cdd:COG0534 380 PMIISLLRLWLvRLPLAYLLAFLGLGLTGVWLALPIGEVLRALLLLLR 427
|
|
| NorM |
COG0534 |
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms]; |
43-369 |
2.27e-07 |
|
Na+-driven multidrug efflux pump, DinF/NorM/MATE family [Defense mechanisms];
Pssm-ID: 440300 [Multi-domain] Cd Length: 427 Bit Score: 52.84 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 43 GLLYTVISVVGVASMFATLGLPSSAARYVAEyteTDPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIASLVG-EAAVA 121
Cdd:COG0534 47 GLAFPIFFLLIALGIGLGVGGTALVAQALGA---GDREEARRVLGQALLLALLLGLLLTLLGLLFAPPLLRLLGaDPEVL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 122 PL----LFVAAVYVIFESLHKYLTGIFQGLNEIALSAVINTIAQVGRLVFAVSLVVVG-YGVWGALAGYLLGFVLSVTIG 196
Cdd:COG0534 124 ALardyLRIILLGLPFLLLFNVLNGILRGLGDTKTPMIIMLIGNVLNIVLDPLLIFGGgLGVAGAALATVISQAVSALLL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 197 GWLLYSR--FYRTLPSASETEEGLVRRILEYSVPLTATRGSTVIdkkVDTILVTALAGLTPAAF--YAVAKQVADACVSP 272
Cdd:COG0534 204 LYYLFRKrsLLRLRLRDLRPDRKILKRILRIGLPAGLQQLAESL---GFLVLNALVARLGTAAVaaYGIALRIESLAFMP 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 273 ASSLGYTISPAFGEEKAGDRLERAARLYEYSLEHVLIFYIPATVGLFLVAEPMLRhVFGAE---YLGATTVIQIFSLFIL 349
Cdd:COG0534 281 ALGLGQAAQPLVGQNLGAGDYDRARRAARLALLLALGIGLLLALLLFLFPEPIIG-LFTDDpevIALAATYLRIAALFQP 359
|
330 340
....*....|....*....|
gi 1221536480 350 ANAINKITTDGLDYLGRARI 369
Cdd:COG0534 360 FDGLQFVLSGALRGAGDTRF 379
|
|
| MurJ |
COG0728 |
Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope ... |
70-478 |
8.26e-07 |
|
Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440492 [Multi-domain] Cd Length: 503 Bit Score: 51.30 E-value: 8.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 70 YVAEYTETDPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIASLVG--------EAAVApLLFVAAVYVIFESLHKYLT 141
Cdd:COG0728 65 LAEALEKEGEEEARRFASRVLTLLLLVLLVLTLLGILFAPLLVKLLApgfdpekfALAVA-LTRIMFPYILFIGLSALLG 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 142 GIFQGLNEIALSA---VINTIAQVGRLVFAVSLVvvGYGVWGALAGYLLGFVLSVTIGGWLLYSRFYRTLPSASETEEGl 218
Cdd:COG0728 144 GVLNARGRFAAPAlapVLLNLVIIAGLLLLAPLF--GPGIYALAWGVLLGGVLQLLIQLPALRRLGLRLRPRFDLRDPG- 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 219 VRRILEYSVPLTATRGSTVIDKKVDTILVTALAGLTPAAFYAvakqvADACVS-P----ASSLGYTISPAFGEEKAGDRL 293
Cdd:COG0728 221 VRRVLKLMLPALLGVSVSQINLLVDTILASFLPEGSVSALYY-----ADRLYQlPlglfGVAIGTALLPRLSRAAAAGDL 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 294 ERAARLYEYSLEHVLIFYIPATVGLFLVAEPMLRHVFG------AEYLGATTVIQIFSLFILANAINKITTDGLDYLGRA 367
Cdd:COG0728 296 EEFRRTLSRGLRLVLLLTLPAAVGLIVLAEPIVRLLFErgaftaEDTALTALALAAYALGLPAFALVKVLARAFYARQDT 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 368 RIRAIFKGGMAVSNVLLNLLLIPVYGAAGAAAATAVTFGSYTLLCVYIMTTELP-IQFSNVTHSITRIFVIAGVMGVGVQ 446
Cdd:COG0728 376 RTPVRIAVIAVVVNIVLNLLLVPPLGHAGLALATSLSALVNALLLLVLLRRRLGgLPLRGILRTLLKLLLASLVMGAVLW 455
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1221536480 447 LLLPYVTG---------VLTLLVVVAAGGGIWLLLSAAWGV 478
Cdd:COG0728 456 LLLRLLGDwlgggllgrLLALALLILVGAAVYFALLLLLGV 496
|
|
| MATE_like |
cd12082 |
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ... |
14-201 |
1.04e-05 |
|
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240527 [Multi-domain] Cd Length: 420 Bit Score: 47.70 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 14 SFGAKIARIITNALLLVILTRFLFTTD--QYGLLYTVISVVGVASMFATLGLPSSAARYvaeYTETDPSQVPRILKTSVL 91
Cdd:cd12082 228 SAIQNSLLSLGLLIIVAIVAAFGGAAAlaAYTVAFRIASLAFMPALGLAQAALPVVGQN---LGAGNFDRARRITWVALL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 92 FVLGFGLLTAVVLAVFNDQIASL-----VGEAAVAPLLFVAAVYVIFESLHKYLTGIFQGLNEIALSAVINTIAQ-VGRL 165
Cdd:cd12082 305 IGLLIGAVLGLLILLFPEPILSLftndpEFLELAVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYwVVRL 384
|
170 180 190
....*....|....*....|....*....|....*.
gi 1221536480 166 VFAVSLVVVGYGVWGALAGYLLGFVLSVTIGGWLLY 201
Cdd:cd12082 385 PLAYVLAYLGLGLYGIWLALVISLILAALVLLLFFR 420
|
|
| PRK15099 |
PRK15099 |
lipid III flippase WzxE; |
41-203 |
2.12e-05 |
|
lipid III flippase WzxE;
Pssm-ID: 185054 Cd Length: 416 Bit Score: 46.93 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 41 QYGLLYTVISVVGVasmFATLGLPSSAARYVAEYtETDPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIA-SLVGEAA 119
Cdd:PRK15099 39 QAGNFRQLITVLGV---LAGAGIFNGVTKYVAQY-HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISqGLFGHTD 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 120 VAPLLFVAAVYVIFESLHKYLTGIFQGLNEialsAVINTIAQVGRLVFAVSLVVVGY---GVWGALAGYLLGFVLSVTIG 196
Cdd:PRK15099 115 YQGVVRAVALIQMGIAWANLLLAILKGFRD----AAGNALSLIVGSLIGVAAYYLCYrlgGYEGALLGLALVPALVVLPA 190
|
....*..
gi 1221536480 197 GWLLYSR 203
Cdd:PRK15099 191 GIMLIRR 197
|
|
| MATE_NorM_like |
cd13131 |
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio ... |
73-206 |
2.64e-05 |
|
Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.
Pssm-ID: 240536 [Multi-domain] Cd Length: 435 Bit Score: 46.34 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 73 EYTETDPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIASL-VGEAAV----APLLFVAAVYVIFESLHKYLTGIFQGL 147
Cdd:cd13131 295 ALGAGDPADARRAGLVGLGLGVGFAALTALLLLLFPEQIAGLyTNDPAVialaASLLVFAALFQLFDGIQVVAAGALRGY 374
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1221536480 148 NEIALSAVINTIAQVGrLVFAVSLVVVGYGVWGAlAGYLLGFVLSVTIGGWLLYSRFYR 206
Cdd:cd13131 375 KDTRVPFLLALISYWG-IGLPLGYLLAFTTGLGA-FGVWIGLIIGLALAAILLLWRFRR 431
|
|
| MATE_like_7 |
cd13133 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The ... |
48-206 |
1.35e-03 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240538 [Multi-domain] Cd Length: 438 Bit Score: 40.97 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 48 VISVVGVASMFAtLGLPSSAARYVAEY-TETDPSQVPRILKTSVLFVLGFGLLTAVVLAVFNDQIASL---------VGE 117
Cdd:cd13133 272 VFSINSLAFLPM-IGLGIAVSSLVGQAlGAGRPDLAMRVTRRGLKLALAYMLLLGILFLLFPELLLSIftpgadfalIAE 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 118 AAVAPLLFVAaVYVIFESLHKYLTGIFQGLNEIALSAVINTIAQVgrlVFAVSLVVVGYGVWGALAGYLLGFVLSVTIGG 197
Cdd:cd13133 351 LAVPLLRFVA-AYILFDALALVFAGALRGAGDTRFVMLAELIVAW---LYLLPPAYLLVVLGAGLAGAWTVETVYVIVLA 426
|
....*....
gi 1221536480 198 WLLYSRFYR 206
Cdd:cd13133 427 LIFLLRFRS 435
|
|
| MATE_MurJ_like |
cd13123 |
MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ... |
89-392 |
2.63e-03 |
|
MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240528 [Multi-domain] Cd Length: 420 Bit Score: 40.13 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 89 SVLFVLGFGLLTAVVLAV-FNDQIASLVG-------EAAVAPLLFVAAVYVIFESLHKYLTGIFQGLNEIALSA---VIN 157
Cdd:cd13123 76 RVLTLLLLVLLLLTLLGIlFAPLLVKLLApgfsgdkFELAVALTRIMFPYLLFISLSALLGGILNAHGRFFAPAlapVLL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 158 TIAQVGRLVFAVSLVvvGYGVWGALAGYLLGFVLSVTIGGWLLYSRFYRTLPSASETEEGlVRRILEYSVPLTATRGSTV 237
Cdd:cd13123 156 NLVIIAGLLLLAPLF--DLGIYALAWGVLLGGVLQLLVQLPALRRLGFRFRPRLDFRDPG-VRRVLKLMLPALLGVSVSQ 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 238 IDKKVDTILVTALAGLTPAAFYavakqVADACVS-P----ASSLGYTISPAFGEEKAGDRLERAARLYEYSLEHVLIFYI 312
Cdd:cd13123 233 INLLVDTILASFLPEGSISALY-----YADRLYQlPlgifGVAIATALLPRLSRLAAAGDLDEFRRTLSRGLRLVLFLLL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 313 PATVGLFLVAEPMLRHV-----FGAEYLGATT-VIQIFSLFILANAINKITTDGLDYLGRARIRAIFKGGMAVSNVLLNL 386
Cdd:cd13123 308 PAAVGLIVLAEPIVRLLfergaFTAEDTLMTAsALAAYALGLPAFALVKLLSRAFYALKDTKTPVKIAVIAVAVNILLNL 387
|
....*.
gi 1221536480 387 LLIPVY 392
Cdd:cd13123 388 LLIKPL 393
|
|
| lysS |
PRK02983 |
bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX; |
51-209 |
7.61e-03 |
|
bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;
Pssm-ID: 235095 [Multi-domain] Cd Length: 1094 Bit Score: 39.18 E-value: 7.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 51 VVGVASMFATLGLPSSAARYVAeytetdpsQVPRILKTSVLF-VLGFGLLTAVVLAVFNdqiASLVGEAAVAplLFVAAV 129
Cdd:PRK02983 17 TVGVIATLSLLASVSPLLRWII--------RVPREFVDDYLFnFPDTSLAWAFVLALLA---AALRRRKRAA--WWVLLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1221536480 130 YVIFESLhKYLTGIFQGLNEIALSAVINTIAQVGRLVFAVSLVV-----------VGYGVWGALAGYLLGFVLSVTIGGW 198
Cdd:PRK02983 84 YLVLAAL-LNVALLALGVNTAAETFGENSLSIIGFAVHVVAIVLlvlarrefparVRRGALRKALAVLVGGLAVGILVGW 162
|
170
....*....|.
gi 1221536480 199 LLYSRFYRTLP 209
Cdd:PRK02983 163 GLVELFPGSLA 173
|
|
| |
