type VI secretion system (T6SS) contractile sheath large subunit forms a long contractile organelle in V. cholerae and in E. coli, suggesting that sheath contraction powers the secretion
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family ...
20-491
0e+00
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport];
:
Pssm-ID: 442739 [Multi-domain] Cd Length: 474 Bit Score: 855.63 E-value: 0e+00
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family ...
20-491
0e+00
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442739 [Multi-domain] Cd Length: 474 Bit Score: 855.63 E-value: 0e+00
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes ...
16-490
0e+00
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274538 [Multi-domain] Cd Length: 473 Bit Score: 838.87 E-value: 0e+00
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type ...
66-365
0e+00
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell.
Pssm-ID: 428683 Cd Length: 301 Bit Score: 570.22 E-value: 0e+00
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family ...
20-491
0e+00
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442739 [Multi-domain] Cd Length: 474 Bit Score: 855.63 E-value: 0e+00
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes ...
16-490
0e+00
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274538 [Multi-domain] Cd Length: 473 Bit Score: 838.87 E-value: 0e+00
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type ...
66-365
0e+00
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell.
Pssm-ID: 428683 Cd Length: 301 Bit Score: 570.22 E-value: 0e+00
EvpB/VC_A0108, tail sheath gpW/gp25-like domain; EvpB is a family of Gram-negative probable ...
379-489
5.01e-65
EvpB/VC_A0108, tail sheath gpW/gp25-like domain; EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell. This entry represents the gpW/gp25-like domain.
Pssm-ID: 436852 [Multi-domain] Cd Length: 111 Bit Score: 205.42 E-value: 5.01e-65
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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