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Conserved domains on  [gi|1222381035|ref|WP_090433243|]
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gluconokinase, GntK/IdnK-type [Ectopseudomonas guguanensis]

Protein Classification

TRAP transporter small permease( domain architecture ID 10790050)

TRAP transporter small permease is a component of a tripartite ATP-independent periplasmic transporter that facilitates the transport of a variety of solutes including ectoine; similar to Rhodobacter capsulatus DctQ, the small integral membrane protein of the C4-dicarboxylate TRAP transporter; TRAP transporter small permease is a component of a tripartite ATP-independent periplasmic transporter that facilitates the transport of one or more from a variety of solutes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GntK COG3265
Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the ...
 14-174 6.61e-81

Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


:

Pssm-ID: 442496 [Multi-domain]  Cd Length: 164  Bit Score: 244.65  E-value: 6.61e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVMGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQAAGECFVLACSAL 93
Cdd:COG3265     4 IVVMGVSGSGKSTVGQALAERLGWPFIDGDDFHPPANIAKMAAGIPLTDEDRAPWLEALADAIAAHLAAGEGAVLACSAL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  94 KRAYRERLRQAIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESPAGEPHVCVVDAQQPRQVVVAEIQAWV 173
Cdd:COG3265    84 KRSYRDRLREGNPDVRFVYLDGSRELIAERLAARKGHFMPASLLDSQFATLEPPGPDEDAIVVDIDQPPEEIVAQILAAL 163


                  .
gi 1222381035 174 R 174
Cdd:COG3265   164 G 164
DctM COG3090
TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate ...
 211-361 6.18e-34

TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism];


:

Pssm-ID: 442324  Cd Length: 168  Bit Score: 123.49  E-value: 6.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035 211 RIARLFDRLTDGLMAVLMAFMVVAVFANVVLRYVFGTGWPGAEELSRLAFVWLVFVGVASGMRRGELMTFRMIRDRFPLL 290
Cdd:COG3090     6 RLLDRLERLEEALAALLLAAMVLLVFAQVVLRYVFNSPLPWTEELARYLFVWLVFLGAAYAVRRGGHIRVDLLVDRLPPR 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1222381035 291 AQRLVDSLSWVLVAGASLLSAWGAWNQVQ--FGWGNVSTVVGYPVVLAMLPVLASMLVLAILAVVQLVNLWRR 361
Cdd:COG3090    86 ARRVLDLLALLLVLAFLALLAWYGWELVLrsWERGQTSPALGIPMWWVYLALPVGFALMALRLLLRLLRLLRG 158
 
Name Accession Description Interval E-value
GntK COG3265
Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the ...
 14-174 6.61e-81

Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442496 [Multi-domain]  Cd Length: 164  Bit Score: 244.65  E-value: 6.61e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVMGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQAAGECFVLACSAL 93
Cdd:COG3265     4 IVVMGVSGSGKSTVGQALAERLGWPFIDGDDFHPPANIAKMAAGIPLTDEDRAPWLEALADAIAAHLAAGEGAVLACSAL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  94 KRAYRERLRQAIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESPAGEPHVCVVDAQQPRQVVVAEIQAWV 173
Cdd:COG3265    84 KRSYRDRLREGNPDVRFVYLDGSRELIAERLAARKGHFMPASLLDSQFATLEPPGPDEDAIVVDIDQPPEEIVAQILAAL 163


                  .
gi 1222381035 174 R 174
Cdd:COG3265   164 G 164
therm_gnt_kin TIGR01313
carbohydrate kinase, thermoresistant glucokinase family; This model represents a subfamily of ...
 14-173 1.15e-65

carbohydrate kinase, thermoresistant glucokinase family; This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.


Pssm-ID: 273551  Cd Length: 163  Bit Score: 205.71  E-value: 1.15e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVMGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQAAGECFVLACSAL 93
Cdd:TIGR01313   1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  94 KRAYRERLRQAIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESP-AGEPHVCVVDAQQPRQVVVAEIQAW 172
Cdd:TIGR01313  81 KRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPlADETDVLRVDIDQPLEGVEEDCIAV 160


                  .
gi 1222381035 173 V 173
Cdd:TIGR01313 161 V 161
GntK cd02021
Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting ...
 14-158 4.21e-58

Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.


Pssm-ID: 238979 [Multi-domain]  Cd Length: 150  Bit Score: 185.53  E-value: 4.21e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVMGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQA-AGECFVLACSA 92
Cdd:cd02021     2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLAsAGEGVVVACSA 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1222381035  93 LKRAYRERLRQ--AIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESP-AGEPHVCVVDA 158
Cdd:cd02021    82 LKRIYRDILRGgaANPRVRFVHLDGPREVLAERLAARKGHFMPADLLDSQFETLEPPgEDEEDVIVIDV 150
gntK PRK11545
gluconokinase;
17-175 7.21e-43

gluconokinase;


Pssm-ID: 236926  Cd Length: 163  Bit Score: 146.78  E-value: 7.21e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  17 MGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQAAGECFVLACSALKRA 96
Cdd:PRK11545    1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  97 YRERLRQAIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESP-AGEPHVCVVDAQQPRQVVVAEIQAWVRR 175
Cdd:PRK11545   81 YRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPgADETDVLVVDIDQPLEGVVASTIEVIKK 160
DctM COG3090
TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate ...
 211-361 6.18e-34

TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism];


Pssm-ID: 442324  Cd Length: 168  Bit Score: 123.49  E-value: 6.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035 211 RIARLFDRLTDGLMAVLMAFMVVAVFANVVLRYVFGTGWPGAEELSRLAFVWLVFVGVASGMRRGELMTFRMIRDRFPLL 290
Cdd:COG3090     6 RLLDRLERLEEALAALLLAAMVLLVFAQVVLRYVFNSPLPWTEELARYLFVWLVFLGAAYAVRRGGHIRVDLLVDRLPPR 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1222381035 291 AQRLVDSLSWVLVAGASLLSAWGAWNQVQ--FGWGNVSTVVGYPVVLAMLPVLASMLVLAILAVVQLVNLWRR 361
Cdd:COG3090    86 ARRVLDLLALLLVLAFLALLAWYGWELVLrsWERGQTSPALGIPMWWVYLALPVGFALMALRLLLRLLRLLRG 158
DctQ pfam04290
Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the ...
 231-361 1.01e-26

Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.


Pssm-ID: 427843  Cd Length: 132  Bit Score: 103.13  E-value: 1.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035 231 MVVAVFANVVLRYVFGTGWPGAEELSRLAFVWLVFVGVASGMRRGELMTFRMIRDRFPLLAQRLVDSLSWVLVAGASLLS 310
Cdd:pfam04290   1 MVLVVFAQVFSRYLFNSPLPWTEELARYLFVWLVFLGAALALRRGSHIRVDLLVDRLPPRVRRLLDLIADLLVLAFAAVL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1222381035 311 AWGAWNQV-QFGWGNVSTVVGYPVVLAMLPVLASMLVLAILAVVQLVNLWRR 361
Cdd:pfam04290  81 AWAGWLVVaLLGGGETSPALGLPLWWVYLALPVGAALLALRALARLVRLLRG 132
PRK09877 PRK09877
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
 218-369 9.55e-16

2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional


Pssm-ID: 182129  Cd Length: 157  Bit Score: 73.80  E-value: 9.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035 218 RLTDGLMAVLMAFMVVAVFANVVLRYVFGTGWPGAEELSRLAFVWLVFVGVASGMRRGELMTFRMIRDRFPLLAQRLVDS 297
Cdd:PRK09877    3 RILEGILAINIAVLSCIVFINIILRYGFQTSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPANQRRVSL 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1222381035 298 LSWVLVAGASLLSAWGAWNQVQFGWGNVSTVVGYPVVLAMLPVLASMLVLAILAVVQLVNLWRRTPQVTLTQ 369
Cdd:PRK09877   83 LTHSLILLLCGALAWGATLKTIQDWSDYSPILGLPIGLMYAACLPTSLVIALFELRHLYQLITRSNSLTSPQ 154
SKI pfam01202
Shikimate kinase;
21-174 2.44e-06

Shikimate kinase;


Pssm-ID: 426122 [Multi-domain]  Cd Length: 159  Bit Score: 46.81  E-value: 2.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  21 GSGKSDISQAVAAALGWRHIEADHFHpaENVERMRAGIPLSDE----DRRHWLDALcEQMLAAQAAgecfVLAC---SAL 93
Cdd:pfam01202   2 GAGKSTIGRLLAKALGLPFIDTDEEI--EKRTGMSIAEIFEEEgeegFRRLESEVL-KELLAEHGL----VIATgggAVL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  94 KRAYRERLRQAipGLqFVHLNIDHATAVQRVGARPG-----HFMPISLVDSQFATLESPAGEP--HVCVVDAQQPRQVVV 166
Cdd:pfam01202  75 SEENRDLLKER--GI-VIYLDAPLEVLLERLKRDKTrpllqNKDPEEELLELLFEERDPLYEEaaDIVIDTDESSPEEVA 151


                  ....*...
gi 1222381035 167 AEIQAWVR 174
Cdd:pfam01202 152 TEILEALE 159
 
Name Accession Description Interval E-value
GntK COG3265
Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the ...
 14-174 6.61e-81

Gluconate kinase [Carbohydrate transport and metabolism]; Gluconate kinase is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442496 [Multi-domain]  Cd Length: 164  Bit Score: 244.65  E-value: 6.61e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVMGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQAAGECFVLACSAL 93
Cdd:COG3265     4 IVVMGVSGSGKSTVGQALAERLGWPFIDGDDFHPPANIAKMAAGIPLTDEDRAPWLEALADAIAAHLAAGEGAVLACSAL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  94 KRAYRERLRQAIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESPAGEPHVCVVDAQQPRQVVVAEIQAWV 173
Cdd:COG3265    84 KRSYRDRLREGNPDVRFVYLDGSRELIAERLAARKGHFMPASLLDSQFATLEPPGPDEDAIVVDIDQPPEEIVAQILAAL 163


                  .
gi 1222381035 174 R 174
Cdd:COG3265   164 G 164
therm_gnt_kin TIGR01313
carbohydrate kinase, thermoresistant glucokinase family; This model represents a subfamily of ...
 14-173 1.15e-65

carbohydrate kinase, thermoresistant glucokinase family; This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.


Pssm-ID: 273551  Cd Length: 163  Bit Score: 205.71  E-value: 1.15e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVMGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQAAGECFVLACSAL 93
Cdd:TIGR01313   1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  94 KRAYRERLRQAIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESP-AGEPHVCVVDAQQPRQVVVAEIQAW 172
Cdd:TIGR01313  81 KRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPlADETDVLRVDIDQPLEGVEEDCIAV 160


                  .
gi 1222381035 173 V 173
Cdd:TIGR01313 161 V 161
GntK cd02021
Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting ...
 14-158 4.21e-58

Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.


Pssm-ID: 238979 [Multi-domain]  Cd Length: 150  Bit Score: 185.53  E-value: 4.21e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVMGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQA-AGECFVLACSA 92
Cdd:cd02021     2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLAsAGEGVVVACSA 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1222381035  93 LKRAYRERLRQ--AIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESP-AGEPHVCVVDA 158
Cdd:cd02021    82 LKRIYRDILRGgaANPRVRFVHLDGPREVLAERLAARKGHFMPADLLDSQFETLEPPgEDEEDVIVIDV 150
gntK PRK11545
gluconokinase;
17-175 7.21e-43

gluconokinase;


Pssm-ID: 236926  Cd Length: 163  Bit Score: 146.78  E-value: 7.21e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  17 MGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQAAGECFVLACSALKRA 96
Cdd:PRK11545    1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  97 YRERLRQAIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESP-AGEPHVCVVDAQQPRQVVVAEIQAWVRR 175
Cdd:PRK11545   81 YRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPgADETDVLVVDIDQPLEGVVASTIEVIKK 160
idnK PRK09825
gluconokinase;
13-171 4.47e-40

gluconokinase;


Pssm-ID: 182097  Cd Length: 176  Bit Score: 139.78  E-value: 4.47e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  13 TLVVMGVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDRRHWLDALCEQMLAAQAAGECFVLACSA 92
Cdd:PRK09825    5 SYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIVCSS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  93 LKRAYRERLRQAIPGLQFVHLNIDHATAVQRVGARPGHFMPISLVDSQFATLESPAGEPH-VCVVD--------AQQPRQ 163
Cdd:PRK09825   85 LKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHdIARIDvnhdienvTEQCRQ 164


                  ....*...
gi 1222381035 164 VVVAEIQA 171
Cdd:PRK09825  165 AVQAFRQA 172
DctM COG3090
TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate ...
 211-361 6.18e-34

TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism];


Pssm-ID: 442324  Cd Length: 168  Bit Score: 123.49  E-value: 6.18e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035 211 RIARLFDRLTDGLMAVLMAFMVVAVFANVVLRYVFGTGWPGAEELSRLAFVWLVFVGVASGMRRGELMTFRMIRDRFPLL 290
Cdd:COG3090     6 RLLDRLERLEEALAALLLAAMVLLVFAQVVLRYVFNSPLPWTEELARYLFVWLVFLGAAYAVRRGGHIRVDLLVDRLPPR 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1222381035 291 AQRLVDSLSWVLVAGASLLSAWGAWNQVQ--FGWGNVSTVVGYPVVLAMLPVLASMLVLAILAVVQLVNLWRR 361
Cdd:COG3090    86 ARRVLDLLALLLVLAFLALLAWYGWELVLrsWERGQTSPALGIPMWWVYLALPVGFALMALRLLLRLLRLLRG 158
DctQ pfam04290
Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the ...
 231-361 1.01e-26

Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.


Pssm-ID: 427843  Cd Length: 132  Bit Score: 103.13  E-value: 1.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035 231 MVVAVFANVVLRYVFGTGWPGAEELSRLAFVWLVFVGVASGMRRGELMTFRMIRDRFPLLAQRLVDSLSWVLVAGASLLS 310
Cdd:pfam04290   1 MVLVVFAQVFSRYLFNSPLPWTEELARYLFVWLVFLGAALALRRGSHIRVDLLVDRLPPRVRRLLDLIADLLVLAFAAVL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1222381035 311 AWGAWNQV-QFGWGNVSTVVGYPVVLAMLPVLASMLVLAILAVVQLVNLWRR 361
Cdd:pfam04290  81 AWAGWLVVaLLGGGETSPALGLPLWWVYLALPVGAALLALRALARLVRLLRG 132
FcbT2 COG4665
TRAP-type mannitol/chloroaromatic compound transport system, small permease component ...
 211-361 2.35e-16

TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443702  Cd Length: 170  Bit Score: 76.00  E-value: 2.35e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035 211 RIARLFDRLTDG---LMAVLMAFMVVAVFANVVLRYVFGTGWPGAEELSRLAFVWLVFVGVASGMRRGELMTFRMIRDRF 287
Cdd:COG4665     4 RLSRAIDRLNRWigrLAAWLILALVLLIVYEVVLRYLFNAPSIWALELQWYLFAAIFLLGAAYTLRRGGHVRVDILYGRL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1222381035 288 PLLAQRLVDSLSWVL-VAGASLLSAWGAWNQVQFGWGN---VSTVVGYPVVLAMLPVLASMLVLAILAVVQLVNLWRR 361
Cdd:COG4665    84 SPRTRAWLDLLGTLLfLLPFCLLLLWASWPFALRSWAIgerSSSAGGLPLWPIKALIPLGFALLALQGLAELIRAIAA 161
PRK09877 PRK09877
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
 218-369 9.55e-16

2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional


Pssm-ID: 182129  Cd Length: 157  Bit Score: 73.80  E-value: 9.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035 218 RLTDGLMAVLMAFMVVAVFANVVLRYVFGTGWPGAEELSRLAFVWLVFVGVASGMRRGELMTFRMIRDRFPLLAQRLVDS 297
Cdd:PRK09877    3 RILEGILAINIAVLSCIVFINIILRYGFQTSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPANQRRVSL 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1222381035 298 LSWVLVAGASLLSAWGAWNQVQFGWGNVSTVVGYPVVLAMLPVLASMLVLAILAVVQLVNLWRRTPQVTLTQ 369
Cdd:PRK09877   83 LTHSLILLLCGALAWGATLKTIQDWSDYSPILGLPIGLMYAACLPTSLVIALFELRHLYQLITRSNSLTSPQ 154
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
14-167 4.84e-11

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 60.70  E-value: 4.84e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVMGVSGSGKSDISQAVAAALGWRHIEADhfhpaenVERMR-AGIPLSDEDRRHWLDALCEQMLAAQA-----AGECFV 87
Cdd:COG0645     2 ILVCGLPGSGKSTLARALAERLGAVRLRSD-------VVRKRlFGAGLAPLERSPEATARTYARLLALArellaAGRSVI 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  88 LACSALKRAYRERLRQA-----IPgLQFVHLNIDHATAVQRVGARPGHFMP----ISLVDSQFATLESPAGEPH-VCVVD 157
Cdd:COG0645    75 LDATFLRRAQREAFRALaeeagAP-FVLIWLDAPEEVLRERLEARNAEGGDsdatWEVLERQLAFEEPLTEDEGfLLVVD 153

                         170
                  ....*....|
gi 1222381035 158 AQQPRQVVVA 167
Cdd:COG0645   154 TSGLEEALAA 163
SKI pfam01202
Shikimate kinase;
21-174 2.44e-06

Shikimate kinase;


Pssm-ID: 426122 [Multi-domain]  Cd Length: 159  Bit Score: 46.81  E-value: 2.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  21 GSGKSDISQAVAAALGWRHIEADHFHpaENVERMRAGIPLSDE----DRRHWLDALcEQMLAAQAAgecfVLAC---SAL 93
Cdd:pfam01202   2 GAGKSTIGRLLAKALGLPFIDTDEEI--EKRTGMSIAEIFEEEgeegFRRLESEVL-KELLAEHGL----VIATgggAVL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  94 KRAYRERLRQAipGLqFVHLNIDHATAVQRVGARPG-----HFMPISLVDSQFATLESPAGEP--HVCVVDAQQPRQVVV 166
Cdd:pfam01202  75 SEENRDLLKER--GI-VIYLDAPLEVLLERLKRDKTrpllqNKDPEEELLELLFEERDPLYEEaaDIVIDTDESSPEEVA 151


                  ....*...
gi 1222381035 167 AEIQAWVR 174
Cdd:pfam01202 152 TEILEALE 159
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 14-147 3.97e-05

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 43.07  E-value: 3.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVM-GVSGSGKSDISQAVAAALGWRHIEADHFHpaenvERMRAGIPLSDEDRRHWLDALCEQMLA----AQAAGECFVL 88
Cdd:pfam13671   1 LILLvGLPGSGKSTLARRLLEELGAVRLSSDDER-----KRLFGEGRPSISYYTDATDRTYERLHElariALRAGRPVIL 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1222381035  89 ACSALKRAYRERLRQAIPGLQF----VHLNIDHATAVQRVGARPGH-----FMPISLVDSQFATLESP 147
Cdd:pfam13671  76 DATNLRRDERARLLALAREYGVpvriVVFEAPEEVLRERLAARARAggdpsDVPEEVLDRQKARFEPP 143
AroK COG0703
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the ...
 14-128 5.75e-04

Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis


Pssm-ID: 440467 [Multi-domain]  Cd Length: 165  Bit Score: 40.11  E-value: 5.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1222381035  14 LVVMGVSGSGKSDISQAVAAALGWRHIEADHFhpaenVERmRAGIPLSD------ED--RRHwldalcE-QMLAAQAAGE 84
Cdd:COG0703     1 IVLIGMMGAGKSTVGRLLAKRLGLPFVDTDAE-----IEE-RAGMSIPEifaeegEAgfREL------ErEVLAELLEEE 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1222381035  85 CFVLAC--SALKRAY-RERLRQAipGLqFVHLNIDHATAVQRVGA---RP 128
Cdd:COG0703    69 NAVIATggGAVLSPEnRELLKEH--GT-VVYLDASPETLLERLRRddnRP 115
PRK11860 PRK11860
bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase;
18-65 1.12e-03

bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase;


Pssm-ID: 237003 [Multi-domain]  Cd Length: 661  Bit Score: 40.80  E-value: 1.12e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1222381035  18 GVSGSGKSDISQAVAAALGWRHIEADHFHPAENVERMRAGIPLSDEDR 65
Cdd:PRK11860  449 GPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAA 496
SK cd00464
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ...
 13-62 2.38e-03

Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.


Pssm-ID: 238260 [Multi-domain]  Cd Length: 154  Bit Score: 38.31  E-value: 2.38e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1222381035  13 TLVVMGVSGSGKSDISQAVAAALGWRHIEADHFhpaenVERmRAGIPLSD 62
Cdd:cd00464     1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL-----IEQ-RAGMSIPE 44
Cmk COG0283
Cytidylate kinase [Nucleotide transport and metabolism];
18-76 3.16e-03

Cytidylate kinase [Nucleotide transport and metabolism];


Pssm-ID: 440052 [Multi-domain]  Cd Length: 220  Bit Score: 38.47  E-value: 3.16e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1222381035  18 GVSGSGKSDISQAVAAALGWRHIE--------ADHFhpaenverMRAGIPLSDEDRrhwLDALCEQM 76
Cdd:COG0283     7 GPAGSGKSTVAKALAKRLGYHYLDtgamyravALAA--------LRNGIDLDDEEA---LAALARNL 62
Pgk2 COG2074
2-phosphoglycerate kinase/Mevalonate-3-phosphate 5-kinase [Carbohydrate transport and ...
 18-40 9.26e-03

2-phosphoglycerate kinase/Mevalonate-3-phosphate 5-kinase [Carbohydrate transport and metabolism, Lipid transport and metabolism];


Pssm-ID: 441677  Cd Length: 207  Bit Score: 37.24  E-value: 9.26e-03
                          10        20
                  ....*....|....*....|...
gi 1222381035  18 GVSGSGKSDISQAVAAALGWRHI 40
Cdd:COG2074    13 GASGVGKSTIAAELARRLGIPRV 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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