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Conserved domains on  [gi|1223535436|ref|WP_091572089|]
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sporulation protein YabP [Melghirimyces thermohalophilus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YabP COG5868
Sporulation protein YabP [Cell cycle control, cell division, chromosome partitioning];
1-98 2.16e-36

Sporulation protein YabP [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 444570  Cd Length: 94  Bit Score: 118.36  E-value: 2.16e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223535436  1 MAEEVflsGAPRHEVNLVDRNTLDVTGVIGVESFDSEEFLLQTECGYLGVRGSNLHIKTLDLEQGRVAINGEFFEMNYLD 80
Cdd:COG5868    1 MEEKE---KSKRHNLTLENRKRLTITGVKDVESFDEEEILLETELGLLTIKGENLHIKKLNLEKGEVSIEGEIDSLEYSD 77

                         90
                 ....*....|....*...
gi 1223535436 81 DGtSRTEKTKGWIGRLFR 98
Cdd:COG5868   78 EK-SQGEKGKGLLSRLFK 94
 
Name Accession Description Interval E-value
YabP COG5868
Sporulation protein YabP [Cell cycle control, cell division, chromosome partitioning];
1-98 2.16e-36

Sporulation protein YabP [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444570  Cd Length: 94  Bit Score: 118.36  E-value: 2.16e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223535436  1 MAEEVflsGAPRHEVNLVDRNTLDVTGVIGVESFDSEEFLLQTECGYLGVRGSNLHIKTLDLEQGRVAINGEFFEMNYLD 80
Cdd:COG5868    1 MEEKE---KSKRHNLTLENRKRLTITGVKDVESFDEEEILLETELGLLTIKGENLHIKKLNLEKGEVSIEGEIDSLEYSD 77

                         90
                 ....*....|....*...
gi 1223535436 81 DGtSRTEKTKGWIGRLFR 98
Cdd:COG5868   78 EK-SQGEKGKGLLSRLFK 94
spore_yabP TIGR02892
sporulation protein YabP; Members of this protein family are the YabP protein of the bacterial ...
 13-98 2.81e-26

sporulation protein YabP; Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein. [Cellular processes, Sporulation and germination]


Pssm-ID: 274341  Cd Length: 85  Bit Score: 92.38  E-value: 2.81e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223535436 13 HEVNLVDRNTLDVTGVIGVESFDSEEFLLQTECGYLGVRGSNLHIKTLDLEQGRVAINGEFFEMNYLDDGTSRtEKTKGW 92
Cdd:TIGR02892  1 HSVSIENRKRLSITGVKEVISFDDEEILLETVMGFLTIKGQELKMNKLDVENGQVIIKGFISELTYSEGNGSK-EKGKGF 79


                 ....*.
gi 1223535436 93 IGRLFR 98
Cdd:TIGR02892 80 FSRLFR 85
YabP pfam07873
YabP family; This family of proteins is involved in spore coat assembly during the process of ...
 13-78 3.82e-16

YabP family; This family of proteins is involved in spore coat assembly during the process of sporulation.


Pssm-ID: 462297  Cd Length: 64  Bit Score: 66.23  E-value: 3.82e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1223535436 13 HEVNLVDRNTLDVTGVIGVESFDSEEFLLQTECGYLGVRGSNLHIKTLDleQGRVAINGEFFEMNY 78
Cdd:pfam07873  1 HKITLTGRRELTIEGVKGVLSFDEEEIRLETKLGILTIKGENLHIKYLT--KGELKIEGKIDSLEY 64
 
Name Accession Description Interval E-value
YabP COG5868
Sporulation protein YabP [Cell cycle control, cell division, chromosome partitioning];
1-98 2.16e-36

Sporulation protein YabP [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444570  Cd Length: 94  Bit Score: 118.36  E-value: 2.16e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223535436  1 MAEEVflsGAPRHEVNLVDRNTLDVTGVIGVESFDSEEFLLQTECGYLGVRGSNLHIKTLDLEQGRVAINGEFFEMNYLD 80
Cdd:COG5868    1 MEEKE---KSKRHNLTLENRKRLTITGVKDVESFDEEEILLETELGLLTIKGENLHIKKLNLEKGEVSIEGEIDSLEYSD 77

                         90
                 ....*....|....*...
gi 1223535436 81 DGtSRTEKTKGWIGRLFR 98
Cdd:COG5868   78 EK-SQGEKGKGLLSRLFK 94
spore_yabP TIGR02892
sporulation protein YabP; Members of this protein family are the YabP protein of the bacterial ...
 13-98 2.81e-26

sporulation protein YabP; Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein. [Cellular processes, Sporulation and germination]


Pssm-ID: 274341  Cd Length: 85  Bit Score: 92.38  E-value: 2.81e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223535436 13 HEVNLVDRNTLDVTGVIGVESFDSEEFLLQTECGYLGVRGSNLHIKTLDLEQGRVAINGEFFEMNYLDDGTSRtEKTKGW 92
Cdd:TIGR02892  1 HSVSIENRKRLSITGVKEVISFDDEEILLETVMGFLTIKGQELKMNKLDVENGQVIIKGFISELTYSEGNGSK-EKGKGF 79


                 ....*.
gi 1223535436 93 IGRLFR 98
Cdd:TIGR02892 80 FSRLFR 85
YabP pfam07873
YabP family; This family of proteins is involved in spore coat assembly during the process of ...
 13-78 3.82e-16

YabP family; This family of proteins is involved in spore coat assembly during the process of sporulation.


Pssm-ID: 462297  Cd Length: 64  Bit Score: 66.23  E-value: 3.82e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1223535436 13 HEVNLVDRNTLDVTGVIGVESFDSEEFLLQTECGYLGVRGSNLHIKTLDleQGRVAINGEFFEMNY 78
Cdd:pfam07873  1 HKITLTGRRELTIEGVKGVLSFDEEEIRLETKLGILTIKGENLHIKYLT--KGELKIEGKIDSLEY 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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