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Conserved domains on  [gi|1224277694|ref|WP_092304117|]
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head completion/stabilization protein [Pseudomonas sp. NFIX28]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_GPL super family cl05474
Phage head completion protein (GPL); This family consists of several phage head completion ...
 15-153 3.63e-33

Phage head completion protein (GPL); This family consists of several phage head completion protein (GPL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids.


The actual alignment was detected with superfamily member pfam05926:

Pssm-ID: 428676  Cd Length: 139  Bit Score: 113.85  E-value: 3.63e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224277694  15 IENNGFWPDLSLAEFQKAYRLPGELLTELLVTHLNMAMYAVNRDLQRLAASWQSLGVTNVATADPLLLPERSHQVNLYKR 94
Cdd:pfam05926   1 ITNDGFFPDISLADFREAMRLDGTVTPARLRAALVEAIAEVNDELAAWRARQQAAGFATLAAVPAPQIDGESVLVARYRR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1224277694  95 ATYCRAKGTVLTDFATVTRREVAENTGKEAPERAEQFLEFSQQAVRALQGRSRITAALL 153
Cdd:pfam05926  81 AVYARAKADLIERYRDIDTTASGENKAEELETTIDDLRRDARWAIRDILGRPRGTVELI 139
 
Name Accession Description Interval E-value
Phage_GPL pfam05926
Phage head completion protein (GPL); This family consists of several phage head completion ...
 15-153 3.63e-33

Phage head completion protein (GPL); This family consists of several phage head completion protein (GPL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids.


Pssm-ID: 428676  Cd Length: 139  Bit Score: 113.85  E-value: 3.63e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224277694  15 IENNGFWPDLSLAEFQKAYRLPGELLTELLVTHLNMAMYAVNRDLQRLAASWQSLGVTNVATADPLLLPERSHQVNLYKR 94
Cdd:pfam05926   1 ITNDGFFPDISLADFREAMRLDGTVTPARLRAALVEAIAEVNDELAAWRARQQAAGFATLAAVPAPQIDGESVLVARYRR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1224277694  95 ATYCRAKGTVLTDFATVTRREVAENTGKEAPERAEQFLEFSQQAVRALQGRSRITAALL 153
Cdd:pfam05926  81 AVYARAKADLIERYRDIDTTASGENKAEELETTIDDLRRDARWAIRDILGRPRGTVELI 139
 
Name Accession Description Interval E-value
Phage_GPL pfam05926
Phage head completion protein (GPL); This family consists of several phage head completion ...
 15-153 3.63e-33

Phage head completion protein (GPL); This family consists of several phage head completion protein (GPL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids.


Pssm-ID: 428676  Cd Length: 139  Bit Score: 113.85  E-value: 3.63e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224277694  15 IENNGFWPDLSLAEFQKAYRLPGELLTELLVTHLNMAMYAVNRDLQRLAASWQSLGVTNVATADPLLLPERSHQVNLYKR 94
Cdd:pfam05926   1 ITNDGFFPDISLADFREAMRLDGTVTPARLRAALVEAIAEVNDELAAWRARQQAAGFATLAAVPAPQIDGESVLVARYRR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1224277694  95 ATYCRAKGTVLTDFATVTRREVAENTGKEAPERAEQFLEFSQQAVRALQGRSRITAALL 153
Cdd:pfam05926  81 AVYARAKADLIERYRDIDTTASGENKAEELETTIDDLRRDARWAIRDILGRPRGTVELI 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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