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Conserved domains on  [gi|1224277696|ref|WP_092304119|]
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phage virion morphogenesis protein [Pseudomonas sp. NFIX28]

Protein Classification

phage virion morphogenesis protein( domain architecture ID 3978)

phage virion morphogenesis protein similar to Methanocaldococcus jannaschii protein MJ0331

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_tail_S super family cl02089
Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail ...
 21-97 5.35e-04

Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail completion and stable head joining.


The actual alignment was detected with superfamily member pfam05069:

Pssm-ID: 470461  Cd Length: 149  Bit Score: 38.92  E-value: 5.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224277696  21 ALLSLPPQLRRRLLNNVSKRVRTMSRKRIREQKNLDGSPFAPRKSADKGKKKMEAGLGKLLQV--------TSVSPDQAV 92
Cdd:pfam05069  13 LLAKLSPADRRPLMRAIGRELRRSQEQRFEAQQAPDGSPWAPRKDTLRSKKGRIKRGGKMLAKlrlarsikTDAGADGAS 92


                  ....*
gi 1224277696  93 LGWRN 97
Cdd:pfam05069  93 VVGTN 97
 
Name Accession Description Interval E-value
Phage_tail_S pfam05069
Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail ...
 21-97 5.35e-04

Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail completion and stable head joining.


Pssm-ID: 428290  Cd Length: 149  Bit Score: 38.92  E-value: 5.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224277696  21 ALLSLPPQLRRRLLNNVSKRVRTMSRKRIREQKNLDGSPFAPRKSADKGKKKMEAGLGKLLQV--------TSVSPDQAV 92
Cdd:pfam05069  13 LLAKLSPADRRPLMRAIGRELRRSQEQRFEAQQAPDGSPWAPRKDTLRSKKGRIKRGGKMLAKlrlarsikTDAGADGAS 92


                  ....*
gi 1224277696  93 LGWRN 97
Cdd:pfam05069  93 VVGTN 97
tail_comp_S TIGR01635
phage virion morphogenesis (putative tail completion) protein; This model describes protein S ...
 14-115 9.78e-04

phage virion morphogenesis (putative tail completion) protein; This model describes protein S of phage P2, suggested experimentally to act in tail completion and stable head joining, and related proteins from a number of phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130696  Cd Length: 144  Bit Score: 38.31  E-value: 9.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224277696  14 LGVREQLALLSLPPQLRRRLLNNVSKRVRTMSRKRIREQKNLDGSPFAPRKSADKGKK----KMEAGLGKLLQVTSVSPD 89
Cdd:TIGR01635   6 IQVALERLLQVLDPKTRDKMLRRIAAQLASSTRKNIEAQQDPDGSAWAARKKKVRSKKgrigKILKKFTQKRLMKSRTSD 85

                          90       100
                  ....*....|....*....|....*..
gi 1224277696  90 QA-VLGWRNGLTSWVAAQQHNGASERR 115
Cdd:TIGR01635  86 YGlVVALIGARERYAAIHQYGGKARSG 112
 
Name Accession Description Interval E-value
Phage_tail_S pfam05069
Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail ...
 21-97 5.35e-04

Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail completion and stable head joining.


Pssm-ID: 428290  Cd Length: 149  Bit Score: 38.92  E-value: 5.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224277696  21 ALLSLPPQLRRRLLNNVSKRVRTMSRKRIREQKNLDGSPFAPRKSADKGKKKMEAGLGKLLQV--------TSVSPDQAV 92
Cdd:pfam05069  13 LLAKLSPADRRPLMRAIGRELRRSQEQRFEAQQAPDGSPWAPRKDTLRSKKGRIKRGGKMLAKlrlarsikTDAGADGAS 92


                  ....*
gi 1224277696  93 LGWRN 97
Cdd:pfam05069  93 VVGTN 97
tail_comp_S TIGR01635
phage virion morphogenesis (putative tail completion) protein; This model describes protein S ...
 14-115 9.78e-04

phage virion morphogenesis (putative tail completion) protein; This model describes protein S of phage P2, suggested experimentally to act in tail completion and stable head joining, and related proteins from a number of phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130696  Cd Length: 144  Bit Score: 38.31  E-value: 9.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224277696  14 LGVREQLALLSLPPQLRRRLLNNVSKRVRTMSRKRIREQKNLDGSPFAPRKSADKGKK----KMEAGLGKLLQVTSVSPD 89
Cdd:TIGR01635   6 IQVALERLLQVLDPKTRDKMLRRIAAQLASSTRKNIEAQQDPDGSAWAARKKKVRSKKgrigKILKKFTQKRLMKSRTSD 85

                          90       100
                  ....*....|....*....|....*..
gi 1224277696  90 QA-VLGWRNGLTSWVAAQQHNGASERR 115
Cdd:TIGR01635  86 YGlVVALIGARERYAAIHQYGGKARSG 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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