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Conserved domains on  [gi|1227387792|ref|WP_094050917|]
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MULTISPECIES: stage III sporulation protein AD [Cohnella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SpoIIIAD COG5825
Stage III sporulation protein SpoIIIAD, component of the engulfment complex [Cell cycle ...
 1-127 2.64e-45

Stage III sporulation protein SpoIIIAD, component of the engulfment complex [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 444527 [Multi-domain]  Cd Length: 127  Bit Score: 143.35  E-value: 2.64e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227387792   1 MDILQIVGIGFLATVLILVIREQKPMFAYLLAAFVGVGIFLAFVGKIGDVISVLEELADRSGIPSVYLKTMLKIIGIAYI 80
Cdd:COG5825     1 MEIIQIVGLGLVATVLAVVLKQQKPEIALLLSLAAGIIIFLFILGKIGAVIDLLRDLAEKANIDSVYLSTLLKIIGIAYI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1227387792  81 AEFGAQIVRDAGLESIATKIEFAGKMLILVMAVPIISVIVETVLNLL 127
Cdd:COG5825    81 AEFGAQICRDAGEGAIASKIELAGKILILVLAIPILTAILETILSLL 127
 
Name Accession Description Interval E-value
SpoIIIAD COG5825
Stage III sporulation protein SpoIIIAD, component of the engulfment complex [Cell cycle ...
 1-127 2.64e-45

Stage III sporulation protein SpoIIIAD, component of the engulfment complex [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444527 [Multi-domain]  Cd Length: 127  Bit Score: 143.35  E-value: 2.64e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227387792   1 MDILQIVGIGFLATVLILVIREQKPMFAYLLAAFVGVGIFLAFVGKIGDVISVLEELADRSGIPSVYLKTMLKIIGIAYI 80
Cdd:COG5825     1 MEIIQIVGLGLVATVLAVVLKQQKPEIALLLSLAAGIIIFLFILGKIGAVIDLLRDLAEKANIDSVYLSTLLKIIGIAYI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1227387792  81 AEFGAQIVRDAGLESIATKIEFAGKMLILVMAVPIISVIVETVLNLL 127
Cdd:COG5825    81 AEFGAQICRDAGEGAIASKIELAGKILILVLAIPILTAILETILSLL 127
spore_III_AD TIGR02849
stage III sporulation protein AD; Members of this family are the uncharacterized protein ...
 27-127 1.92e-24

stage III sporulation protein AD; Members of this family are the uncharacterized protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon. The length of the alignment and the scoring cutoff thresholds for the model have been set to try to detect all valid members of the family, even if annotation of the start site begins too far downstream. [Cellular processes, Sporulation and germination]


Pssm-ID: 131896  Cd Length: 101  Bit Score: 89.65  E-value: 1.92e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227387792  27 FAYLLAAFVGVGIFLAFVGKIGDVISVLEELADRSGIPSVYLKTMLKIIGIAYIAEFGAQIVRDAGLESIATKIEFAGKM 106
Cdd:TIGR02849   1 IAVFLSLIAGIVIFLFVMPKINAVVEVIQSLARKAGLDSLYLATVLKIIGIAYIAEFGSQICKDAGEKAIASKIELAGKI 80

                          90       100
                  ....*....|....*....|.
gi 1227387792 107 LILVMAVPIISVIVETVLNLL 127
Cdd:TIGR02849  81 LILLLAVPIITGVLEAILSIL 101
SpoIIIAC pfam06686
Stage III sporulation protein AC/AD protein family; This family consists of several bacterial ...
 71-126 3.89e-09

Stage III sporulation protein AC/AD protein family; This family consists of several bacterial stage III sporulation protein AC (SpoIIIAC) and SpoIIIAD sequences. The exact function of this family is unknown. SpoIIIAD is the an uncharacterized protein which is part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. The operon is regulated by sigmaG.


Pssm-ID: 461987  Cd Length: 56  Bit Score: 49.27  E-value: 3.89e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1227387792  71 MLKIIGIAYIAEFGAQIVRDAGLESIATKIEFAGKMLILVMAVPIISVIVETVLNL 126
Cdd:pfam06686   1 ILKIAGIGIIAAFLALILKDAGPEEIASLIELAGGIIILLLVLPKLSALLETIRSL 56
 
Name Accession Description Interval E-value
SpoIIIAD COG5825
Stage III sporulation protein SpoIIIAD, component of the engulfment complex [Cell cycle ...
 1-127 2.64e-45

Stage III sporulation protein SpoIIIAD, component of the engulfment complex [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444527 [Multi-domain]  Cd Length: 127  Bit Score: 143.35  E-value: 2.64e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227387792   1 MDILQIVGIGFLATVLILVIREQKPMFAYLLAAFVGVGIFLAFVGKIGDVISVLEELADRSGIPSVYLKTMLKIIGIAYI 80
Cdd:COG5825     1 MEIIQIVGLGLVATVLAVVLKQQKPEIALLLSLAAGIIIFLFILGKIGAVIDLLRDLAEKANIDSVYLSTLLKIIGIAYI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1227387792  81 AEFGAQIVRDAGLESIATKIEFAGKMLILVMAVPIISVIVETVLNLL 127
Cdd:COG5825    81 AEFGAQICRDAGEGAIASKIELAGKILILVLAIPILTAILETILSLL 127
spore_III_AD TIGR02849
stage III sporulation protein AD; Members of this family are the uncharacterized protein ...
 27-127 1.92e-24

stage III sporulation protein AD; Members of this family are the uncharacterized protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon. The length of the alignment and the scoring cutoff thresholds for the model have been set to try to detect all valid members of the family, even if annotation of the start site begins too far downstream. [Cellular processes, Sporulation and germination]


Pssm-ID: 131896  Cd Length: 101  Bit Score: 89.65  E-value: 1.92e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1227387792  27 FAYLLAAFVGVGIFLAFVGKIGDVISVLEELADRSGIPSVYLKTMLKIIGIAYIAEFGAQIVRDAGLESIATKIEFAGKM 106
Cdd:TIGR02849   1 IAVFLSLIAGIVIFLFVMPKINAVVEVIQSLARKAGLDSLYLATVLKIIGIAYIAEFGSQICKDAGEKAIASKIELAGKI 80

                          90       100
                  ....*....|....*....|.
gi 1227387792 107 LILVMAVPIISVIVETVLNLL 127
Cdd:TIGR02849  81 LILLLAVPIITGVLEAILSIL 101
SpoIIIAC pfam06686
Stage III sporulation protein AC/AD protein family; This family consists of several bacterial ...
 71-126 3.89e-09

Stage III sporulation protein AC/AD protein family; This family consists of several bacterial stage III sporulation protein AC (SpoIIIAC) and SpoIIIAD sequences. The exact function of this family is unknown. SpoIIIAD is the an uncharacterized protein which is part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. The operon is regulated by sigmaG.


Pssm-ID: 461987  Cd Length: 56  Bit Score: 49.27  E-value: 3.89e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1227387792  71 MLKIIGIAYIAEFGAQIVRDAGLESIATKIEFAGKMLILVMAVPIISVIVETVLNL 126
Cdd:pfam06686   1 ILKIAGIGIIAAFLALILKDAGPEEIASLIELAGGIIILLLVLPKLSALLETIRSL 56
SpoIIIAC pfam06686
Stage III sporulation protein AC/AD protein family; This family consists of several bacterial ...
 3-57 7.21e-03

Stage III sporulation protein AC/AD protein family; This family consists of several bacterial stage III sporulation protein AC (SpoIIIAC) and SpoIIIAD sequences. The exact function of this family is unknown. SpoIIIAD is the an uncharacterized protein which is part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. The operon is regulated by sigmaG.


Pssm-ID: 461987  Cd Length: 56  Bit Score: 32.70  E-value: 7.21e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1227387792   3 ILQIVGIGFLATVLILVIREQKP-MFAYLLAAFVGVGIFLAFVGKIGDVISVLEEL 57
Cdd:pfam06686   1 ILKIAGIGIIAAFLALILKDAGPeEIASLIELAGGIIILLLVLPKLSALLETIRSL 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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