|
Name |
Accession |
Description |
Interval |
E-value |
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
1-306 |
0e+00 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 573.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSPFTGERKLPPEVMANIEAKYHLNDPMYKQYFNYLIQLSKGDFGPSFK 80
Cdd:PRK09471 1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 81 YKDYSVNDLVAKAFPVSAKLGATAFIVAVLFGVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIHLKW 160
Cdd:PRK09471 81 YKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLHW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 161 FPGGGWDGGNLKHMVLPMVALSLAYIASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSYMGPAF 240
Cdd:PRK09471 161 LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236167525 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGVLTITFNAIVDVLYAVIDPKIRY 306
Cdd:PRK09471 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-306 |
3.28e-129 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 370.17 E-value: 3.28e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSPFTG--ERKLPPEVMANIEAKYHLNDPMYKQYFNYLIQLSKGDFGPS 78
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAAllGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 79 FKYKDySVNDLVAKAFPVSAKLGATAFIVAVLFGVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIHL 158
Cdd:COG0601 81 FVYGR-PVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 159 KWFPGGGW------DGGNLKHMVLPMVALSLAYIASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPV 232
Cdd:COG0601 160 GWLPVSGRvspwedFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPV 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1236167525 233 LSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGVLTITFNAIVDVLYAVIDPKIRY 306
Cdd:COG0601 240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
112-306 |
6.70e-28 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 106.61 E-value: 6.70e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 112 GVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIhlkwfpgggwdgGNLKHMVLPMVALSLAYIASISR 191
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL------------SILGHGILPAIILALLGWAGYAR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 192 ITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRD 271
Cdd:pfam00528 69 LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYD 148
|
170 180 190
....*....|....*....|....*....|....*
gi 1236167525 272 YSLVLSLTILVGVLTITFNAIVDVLYAVIDPKIRY 306
Cdd:pfam00528 149 YPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
94-287 |
8.61e-18 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 79.63 E-value: 8.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 94 FPVSAKLGATAFIVAVLFGVSAGVIAALNQNtKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIHLKWfpgggwdgGNLKH 173
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW--------GILPG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 174 MVLPMVALSLAYIASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSYMGPAFVGIITGSMVIETI 253
Cdd:cd06261 72 LGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151
|
170 180 190
....*....|....*....|....*....|....*...
gi 1236167525 254 FG----LPGIGQLFVNGALNRDYSLVLSLTILVGVLTI 287
Cdd:cd06261 152 GGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
1-306 |
0e+00 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 573.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSPFTGERKLPPEVMANIEAKYHLNDPMYKQYFNYLIQLSKGDFGPSFK 80
Cdd:PRK09471 1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 81 YKDYSVNDLVAKAFPVSAKLGATAFIVAVLFGVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIHLKW 160
Cdd:PRK09471 81 YKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLHW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 161 FPGGGWDGGNLKHMVLPMVALSLAYIASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSYMGPAF 240
Cdd:PRK09471 161 LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236167525 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGVLTITFNAIVDVLYAVIDPKIRY 306
Cdd:PRK09471 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-306 |
3.28e-129 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 370.17 E-value: 3.28e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSPFTG--ERKLPPEVMANIEAKYHLNDPMYKQYFNYLIQLSKGDFGPS 78
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAAllGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 79 FKYKDySVNDLVAKAFPVSAKLGATAFIVAVLFGVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIHL 158
Cdd:COG0601 81 FVYGR-PVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 159 KWFPGGGW------DGGNLKHMVLPMVALSLAYIASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPV 232
Cdd:COG0601 160 GWLPVSGRvspwedFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPV 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1236167525 233 LSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGVLTITFNAIVDVLYAVIDPKIRY 306
Cdd:COG0601 240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
|
|
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
1-305 |
1.88e-62 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 200.31 E-value: 1.88e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSP---FTGERKLPP--EVMANIEAKYHLNDPMYKQYFNYLIQLSKGDF 75
Cdd:PRK10352 1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPaldYLRLSNLPPtpEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 76 GPSFKYKDYSVNDLVaKAFPVSAKLGATAFIVAVLFGVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFA 155
Cdd:PRK10352 81 GISFATQRPVLDDLL-NFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 156 IHLKWFPGGGWdgGNLKHMVLPMVALSLAYIASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSY 235
Cdd:PRK10352 160 VYLQWLPAMGY--GGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITA 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 236 MGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGVLTITFNAIVDVLYAVIDPKIR 305
Cdd:PRK10352 238 VGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
|
|
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
1-306 |
3.25e-62 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 199.17 E-value: 3.25e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSP--FTGERKLPPEVMANIEAKYHLNDPMYKQYFNYLIQLSKGDFGPS 78
Cdd:PRK15081 1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDParLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 79 FKYKDySVNDLVAKAFPVSAKLGATAFIVAVLFGVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIHL 158
Cdd:PRK15081 81 MVSRR-PVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 159 KWFPGGGWDggNLKHMVLPMVALSLAYIASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSYMGP 238
Cdd:PRK15081 160 GWLPTVGAD--SWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGL 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236167525 239 AFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGVLTITFNAIVDVLYAVIDPKIRY 306
Cdd:PRK15081 238 QFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRY 305
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
1-306 |
1.62e-55 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 183.09 E-value: 1.62e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSPFT---GERKLPPEVMANIEAKYHLNDPMYKQYFNYLIQLSKGDFGP 77
Cdd:PRK10914 1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMimaGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 78 SFKYKdYSVNDLVAKAFPVSAKLGATAFIVAVLFGVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIH 157
Cdd:PRK10914 81 SLKSR-IPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVH 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 158 LKWFPGGG------------------------W-DGGNLK----HMVLPMVALSLAYIASISRITRGSMIEIMHSNFIRT 208
Cdd:PRK10914 160 WNLTPVSGrvsdmvflddsnpltgfmlidtaiWgEDGNFIdavaHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 209 ARAKGLPLRTIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGVLTIT 288
Cdd:PRK10914 240 ARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIIL 319
|
330
....*....|....*...
gi 1236167525 289 FNAIVDVLYAVIDPKIRY 306
Cdd:PRK10914 320 VNLLVDLLYGVVNPRIRH 337
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
1-306 |
1.84e-44 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 154.90 E-value: 1.84e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSP----------------------------------------FTGERK 40
Cdd:PRK15133 1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPvdqaiaaiefgqagglpgaggegvrashaqtgvgnisdsnYRGGRG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 41 LPPEVMANIEAKYHLNDPMYKQYFNYLIQLSKGDFGPSFkYKDYSVNDLVAKAFPVSAKLGATAFIVAVLFGVSAGVIAA 120
Cdd:PRK15133 81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSL-FRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 121 LNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFA--IHLKWFPGGGWDGGN-------------LKHMVLPMVALSLAY 185
Cdd:PRK15133 160 VRNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSANfdslpwyqkitdyLWHITLPVLATVIGG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 186 IASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSYMGPAFVGI-ITGSMVIETIFGLPGIGQLFV 264
Cdd:PRK15133 240 FAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMfFTGSLLIEVMFSLNGLGLLGY 319
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1236167525 265 NGALNRDYSLVLSLTILVGVLTITFNAIVDVLYAVIDPKIRY 306
Cdd:PRK15133 320 EATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDF 361
|
|
| PRK15110 |
PRK15110 |
peptide ABC transporter permease SapB; |
1-302 |
1.58e-39 |
|
peptide ABC transporter permease SapB;
Pssm-ID: 185065 [Multi-domain] Cd Length: 321 Bit Score: 140.98 E-value: 1.58e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSPFTGerklppevmANIEAKYHLndpmykqYFNYLIQlskGDFGPSfK 80
Cdd:PRK15110 1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQG---------ASLWDAWVF-------WFNGLLH---WDFGVS-S 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 81 YKDYSVNDLVAKAFPVSAKLGATAFIVAVLFGVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIHLKW 160
Cdd:PRK15110 61 INGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGW 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 161 FPGGG-------------------WDGGN----------LKHMVLPMVALSLAYIASISRITRGSMIEIMHSNFIRTARA 211
Cdd:PRK15110 141 LPVSGrfdllyevkpvtgfalidaWLSDSpwrdemimsaIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAAT 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 212 KGLPLRTIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGVLTITFNA 291
Cdd:PRK15110 221 RGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNV 300
|
330
....*....|.
gi 1236167525 292 IVDVLYAVIDP 302
Cdd:PRK15110 301 LSDILGAMANP 311
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
112-306 |
6.70e-28 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 106.61 E-value: 6.70e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 112 GVSAGVIAALNQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIhlkwfpgggwdgGNLKHMVLPMVALSLAYIASISR 191
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL------------SILGHGILPAIILALLGWAGYAR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 192 ITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRD 271
Cdd:pfam00528 69 LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYD 148
|
170 180 190
....*....|....*....|....*....|....*
gi 1236167525 272 YSLVLSLTILVGVLTITFNAIVDVLYAVIDPKIRY 306
Cdd:pfam00528 149 YPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
94-287 |
8.61e-18 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 79.63 E-value: 8.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 94 FPVSAKLGATAFIVAVLFGVSAGVIAALNQNtKWDFTVMGFAMTGVVIPSFVVAPLLVLIFAIHLKWfpgggwdgGNLKH 173
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW--------GILPG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 174 MVLPMVALSLAYIASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSYMGPAFVGIITGSMVIETI 253
Cdd:cd06261 72 LGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151
|
170 180 190
....*....|....*....|....*....|....*...
gi 1236167525 254 FG----LPGIGQLFVNGALNRDYSLVLSLTILVGVLTI 287
Cdd:cd06261 152 GGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
96-233 |
1.56e-09 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 57.43 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 96 VSAKLGATAFIVAVLFGVSAGVIAALnQNTKWDFTVMGFAMTGVVIPSFVVAPLLVLIFaihlkwfpGGGWdggnlkhmV 175
Cdd:COG1173 80 ISLLVGLLAVLIALVIGVLLGLLAGY-FGGWVDAVLMRLVDVLLAFPSLLLAIALVAVL--------GPGL--------L 142
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1236167525 176 LPMVALSLAYIASISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALkPALLPVL 233
Cdd:COG1173 143 NVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHIL-PNVLPPL 199
|
|
| BPD_transp_1_N |
pfam19300 |
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ... |
1-100 |
4.86e-08 |
|
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.
Pssm-ID: 437132 [Multi-domain] Cd Length: 114 Bit Score: 50.30 E-value: 4.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 1 MLKFIIRRLLEAIPTLLVLITISFFMMRLAPGSP---FTGeRKLPPEVMANIEAKYHLNDPMYKQYFNYLIQLSKG-DFG 76
Cdd:pfam19300 1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDParlACG-KNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGrDFG 79
|
90 100 110
....*....|....*....|....*....|....*
gi 1236167525 77 P-----------SFKYKDySVNDLVAKAFPVSAKL 100
Cdd:pfam19300 80 AvghcpapclgySFANNE-PVWDTIMDRFPTTLSL 113
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
188-294 |
2.08e-04 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 42.28 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 188 SISRITRGSMIEIMHSNFIRTARAKGLPLRTIILRHALKPALLPVLSYMGPAFVGIITGSMVIETI-FGL----PGIGQL 262
Cdd:PRK15021 217 SLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLgFGLplgsPSLGEL 296
|
90 100 110
....*....|....*....|....*....|....*..
gi 1236167525 263 FVNGALNRD-----YSLVLSLTILVGVLTITFNAIVD 294
Cdd:PRK15021 297 LLQGKNNLQapwlgITAFLSVAILLSLLIFIGEAVRD 333
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
96-296 |
3.43e-04 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 41.29 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 96 VSAKLGATAFIVAVLFGVSAGVIAALNQntKWDFTVMGFAMTGVVIPSFVVAPLLVLifaihlkWFPGGGWdggnLK--- 172
Cdd:COG0600 65 ASLLRVLLGFALAALLGVPLGLLLGLSR--LLRRLLDPLLVFLRPIPPLALAPLLIL-------WFGIGEA----SKifv 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236167525 173 --HMVLPMVALSLAY-IASISRitrgsmieimhsNFIRTARAKGLP----LRTIILRHALkPALLPVLSY-MGPAFVGII 244
Cdd:COG0600 132 ifLGAFFPILLNTAAgVRSVDP------------ELLELARSLGASrwqiLRKVVLPAAL-PYIFTGLRIaLGLAWIGLV 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1236167525 245 TGsmviETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGVLTITFNAIVDVL 296
Cdd:COG0600 199 VA----ELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLL 246
|
|
| |
