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Conserved domains on  [gi|1236168265|ref|WP_094961159|]
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MULTISPECIES: hypothetical protein [Providencia]

Protein Classification

type II toxin-antitoxin system HicB family antitoxin( domain architecture ID 581201)

type II toxin-antitoxin system HicB family antitoxin is the antitoxin component of a type II toxin-antitoxin (TA) system and functions as an mRNA interferase antitoxin preventing effects of the cognate HicA family toxin

Gene Ontology:  GO:0110001
PubMed:  30337369|16895922|28279904
SCOP:  4001747

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HicB_lk_antitox super family cl23837
HicB_like antitoxin of bacterial toxin-antitoxin system; This is a family of HicB-like ...
 3-82 8.44e-12

HicB_like antitoxin of bacterial toxin-antitoxin system; This is a family of HicB-like antitoxins.


The actual alignment was detected with superfamily member pfam15970:

Pssm-ID: 451570  Cd Length: 81  Bit Score: 57.50  E-value: 8.44e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168265   3 NYQATIEFIEEENVYEINFSDFPDLQGVSYCREDVELEAQEILLASFAEHIELRKPIPLATQQKNGEaFTVYLPIICCLK 82
Cdd:pfam15970   1 SYPASYTVDEASGEYHIHYRDFPELNSVTYSLEDVELEAQEGIKNGVAAEMEERRLIPAPSALQPGD-IAVHVPILVRLK 79
 
Name Accession Description Interval E-value
HicB-like_2 pfam15970
HicB_like antitoxin of bacterial toxin-antitoxin system; This is a family of HicB-like ...
 3-82 8.44e-12

HicB_like antitoxin of bacterial toxin-antitoxin system; This is a family of HicB-like antitoxins.


Pssm-ID: 435044  Cd Length: 81  Bit Score: 57.50  E-value: 8.44e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168265   3 NYQATIEFIEEENVYEINFSDFPDLQGVSYCREDVELEAQEILLASFAEHIELRKPIPLATQQKNGEaFTVYLPIICCLK 82
Cdd:pfam15970   1 SYPASYTVDEASGEYHIHYRDFPELNSVTYSLEDVELEAQEGIKNGVAAEMEERRLIPAPSALQPGD-IAVHVPILVRLK 79
 
Name Accession Description Interval E-value
HicB-like_2 pfam15970
HicB_like antitoxin of bacterial toxin-antitoxin system; This is a family of HicB-like ...
 3-82 8.44e-12

HicB_like antitoxin of bacterial toxin-antitoxin system; This is a family of HicB-like antitoxins.


Pssm-ID: 435044  Cd Length: 81  Bit Score: 57.50  E-value: 8.44e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168265   3 NYQATIEFIEEENVYEINFSDFPDLQGVSYCREDVELEAQEILLASFAEHIELRKPIPLATQQKNGEaFTVYLPIICCLK 82
Cdd:pfam15970   1 SYPASYTVDEASGEYHIHYRDFPELNSVTYSLEDVELEAQEGIKNGVAAEMEERRLIPAPSALQPGD-IAVHVPILVRLK 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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