|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13578 |
PRK13578 |
ornithine decarboxylase; Provisional |
1-719 |
0e+00 |
|
ornithine decarboxylase; Provisional
Pssm-ID: 237434 [Multi-domain] Cd Length: 720 Bit Score: 1399.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 1 MNKINVACSQGVAIYFTNEFQWVDIRDAQLNNIAAVVLSEQDANQGLWERVVESQLSIPLFIISDKQLPTDENLPPYLTA 80
Cdd:PRK13578 1 MKSLKIAASRELPSCFSTHREVVALDQTDFTDVAAVVLSVADSRSGILALIKRTGFGIPVFVATEEEEEVPAEVLPRISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 81 LLPPAPAAREENSRQLLDAANQYLEQLLPPFFARMMDYAAGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLC 160
Cdd:PRK13578 81 VFELCESNNEFYGRQLETAASKYEENLLPPFFDTLTDYVEMGNSTFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRADMC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 161 NADVAMGDLLIHEGAAKEAQKFAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
Cdd:PRK13578 161 NADVKLGDLLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 241 YLETARNPFGFIGGIDAHCFDESYLRGLIQEVMPEKAQAQRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAW 320
Cdd:PRK13578 241 YLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 321 VGYEQFIPMMRQCSPLLLELNENDPGIMVTQSVHKQLAGFSQASQIHKKDNHIKGQERFVSHKKLNNAFMMHASTSPFYP 400
Cdd:PRK13578 321 VGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 401 LFASLDVNARIHQGDAGKMMWMDCVKVGIEVRKSILQHCRYFKPFVPEIVDGKLWHEYPTEQIAAEQRFFNFIPQERWHA 480
Cdd:PRK13578 401 LFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHG 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 481 FDGYAQDQYFVDPCKLMLTTPGIDVESGEYDAFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETREKLELLVSHLV 560
Cdd:PRK13578 481 FEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 561 RFEQLLDEDALLEDVLPSVYQRYQDHYQGYTLRRLCQEMHQLSVNDNIKQLQKEMFRKAHFPEVKMAPQQAHLEFIRGNC 640
Cdd:PRK13578 561 RFEKHIEDDAPLAEVLPSVYKKNPERYRGYTLRQLCQEMHDLYVSHDVKQLQKEMFRKASFPRVVMNPQDANIAYIRGEV 640
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236168516 641 ELLPLDELEGRIAVEGALPYPPGVLCVVPGEVWSGPVLRYFKALETGINALPGFAPELQGVYISKNEGEKKRVYAHVLK 719
Cdd:PRK13578 641 ELVRLSEAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQRYFLALEEGINLLPGFAPELQGVYLETDADGRKRAYGYVLK 719
|
|
| ODC_inducible |
TIGR04301 |
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ... |
1-719 |
0e+00 |
|
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ornithine decarboxylase, all encoded in the immediate vicinity of an ornithine-putrescine antiporter. Decarboxylation of ornithine to putrescine, followed by exchange of a putrescine for a new ornithine, is a proton-motive cycle that can be induced by low pH and protect a bacterium against transient exposure to acidic conditions.
Pssm-ID: 275113 [Multi-domain] Cd Length: 719 Bit Score: 1310.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 1 MNKINVACSQGVAIYFTNEFQWVDIRDAQLNNIAAVVLSEQDANQGLWERVVESQLSIPLFIISDKQLPTDENLPPYLTA 80
Cdd:TIGR04301 1 MKKLKIAVSELLPDCFSTNREVVDINNTDFTDVAAVVISVDDIKNGVLEQIEETGFGIPVFVILNDEETVPAEILPRVTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 81 LLPPAPAAREENSRQLLDAANQYLEQLLPPFFARMMDYAAGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLC 160
Cdd:TIGR04301 81 VIDLNESDIDFYGRQIETAATKYEEKLLPPFFGALVKYVEQGNSAFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRSDLC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 161 NADVAMGDLLIHEGAAKEAQKFAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
Cdd:TIGR04301 161 NADVALGDLLIHEGAPCDAQQHAAKVFNADKTYFVLNGTSASNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 241 YLETARNPFGFIGGIDAHCFDESYLRGLIQEVMPEKAQAQRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAW 320
Cdd:TIGR04301 241 YLETARNPFGFIGGIDEHCFEEEYLRELIREVAPERAKEKRPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 321 VGYEQFIPMMRQCSPLLLELNENDPGIMVTQSVHKQLAGFSQASQIHKKDNHIKGQERFVSHKKLNNAFMMHASTSPFYP 400
Cdd:TIGR04301 321 VGYEQFIPMMKDCSPLLLELNPEDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQARYCNHKRFNNAFMMHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 401 LFASLDVNARIHQGDAGKMMWMDCVKVGIEVRKSILQHCRYFKPFVPEIVDGKLWHEYPTEQIAAEQRFFNFIPQERWHA 480
Cdd:TIGR04301 401 LFAALDVNAKMHEGESGRRLWMDCVKTGIEARKLLLKNCKYIRPFIPEMVDGKPWQDYDTDQIANDLRFFNFVPGEKWHS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 481 FDGYAQDQYFVDPCKLMLTTPGIDVESGEYDAFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETREKLELLVSHLV 560
Cdd:TIGR04301 481 FEGYGENQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANFLRENGIIPEKCDLNSILFLLTPAEDMAKMQHLVAQIA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 561 RFEQLLDEDALLEDVLPSVYQRYQDHYQGYTLRRLCQEMHQLSVNDNIKQLQKEMFRKAHFPEVKMAPQQAHLEFIRGNC 640
Cdd:TIGR04301 561 RFEKLLEEDAPLAEVLPSVYKANEERYKGYTIRQLCQEMHDLYVSRNVKQLQKEMFRKAHFPEVVMNPQEANIEFVRGEA 640
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236168516 641 ELLPLDELEGRIAVEGALPYPPGVLCVVPGEVWSGPVLRYFKALETGINALPGFAPELQGVYISKNEGEKKRVYAHVLK 719
Cdd:TIGR04301 641 ELVPLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQQYFLALEEGINLLPGFAPELQGVYLEKDEDGRKRAYGYVLK 719
|
|
| OKR_DC_1 |
pfam01276 |
Orn/Lys/Arg decarboxylase, major domain; |
109-551 |
0e+00 |
|
Orn/Lys/Arg decarboxylase, major domain;
Pssm-ID: 396025 [Multi-domain] Cd Length: 417 Bit Score: 669.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 109 PPFFARMMDYAAGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLCNADVAMGDLLIHEGAAKEAQKFAAKVFN 188
Cdd:pfam01276 1 PPLYKALFKYVRRGNYTFHCPGHQGGAGFQKHPAGRFFYDFFGENLLRIDVCIEDVELGDLLDHEGAIKEAQKYAARVFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 189 ADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHgALIQAGATPVYLETARNPFGFIGGIDAHCFDESYLRGL 268
Cdd:pfam01276 81 ADKSYFVVNGTSGSNKTVGMAVCTPGDTILIDRNCHKSIHH-ALMLSGATPVYLEPSRNAYGIIGGIPLHEFQEETLKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 269 IQEVMPEKAqaqrpFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMRQCSPLLLElNENDPGIM 348
Cdd:pfam01276 160 IAEVPDAKG-----PRLAVITNPTYDGVLYNAKEIVDTLHHLSDPILFDSAWVGYEQFIPIYADASPMGGE-NENGPGIF 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 349 VTQSVHKQLAGFSQASQIHKKDNHIkgqerfVSHKKLNNAFMMHASTSPFYPLFASLDVNARIHQGDAGKMMWMDCVKVG 428
Cdd:pfam01276 234 VTQSVHKLLAALSQASYIHKKEGHI------VNHDRFNEAFMMHATTSPSYPIFASLDVAAKMLEGNSGRRLWNECVERA 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 429 IEVRKSI--LQHCRYFKPFVPEIVDGKLwheypteqiaaeqrFFNFIPQERWHAFDGYAQDQYFVDPCKLMLTTPGIDvE 506
Cdd:pfam01276 308 IEFRKAIdtLNNCEFFRPWNPEIVDGKE--------------CWPFHPGETWHGFEGYADNQYFLDPCKLTILTPGMD-E 372
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1236168516 507 SGEYDAFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETREK 551
Cdd:pfam01276 373 DGEYSEFGVPATIVAKWLRENGIVPEKTDLNNILFLFTPGEDRTK 417
|
|
| LdcC |
COG1982 |
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism]; |
103-703 |
0e+00 |
|
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
Pssm-ID: 441585 [Multi-domain] Cd Length: 486 Bit Score: 602.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 103 YLEQLLPPFFARMMDYAAGHNVTFACPGHQGGQFFrrhptGEQFYQFYGENLFRTDLCNaDVAMGDLLIHEGAAKEAQKF 182
Cdd:COG1982 1 YMDQLLTPLFDALKKYAERGPVSFHVPGHKGGRGF-----GREFYDFFGENVFRLDLTE-LPGLDDLHDPEGVIKEAQEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 183 AAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGaLIQAGATPVYLETA-RNPFGFIGGIDAHCFD 261
Cdd:COG1982 75 AAEAFGADRTFFLVNGTSSGNKAMILAVCGPGDKVLVPRNCHKSVIHG-LILSGAIPVYLNPEiDNELGIIGGITPEAVE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 262 ESYlrgliqevmpekaQAQRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMRqCSPLLLeln 341
Cdd:COG1982 154 EAL-------------IEHPDAKAVLITNPTYYGVCYDLKAIAELAHEHGIPVLVDEAHGAHFGFHPDLP-RSAMEA--- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 342 endPGIMVTQSVHKQLAGFSQASQIHKKDNHikgqerfVSHKKLNNAFMMHASTSPFYPLFASLDVNARIHQGDaGKMMW 421
Cdd:COG1982 217 ---GADLVVQSTHKTLGALTQSSMLHVKGGR-------VDHERVNEALMLLQSTSPSYLLMASLDVARRQMAGE-GEELL 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 422 MDCVKVGIEVRKSILQHcRYFKPFVPEIVDGKlwheypteqiaaeqrffnfipqerwhafdgyaqDQYFVDPCKLMLTTP 501
Cdd:COG1982 286 DEALELAIEARKEINKI-PGLYVFGPEDLGAP---------------------------------GVYDLDPTKLTIDVP 331
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 502 GIdvesgeydafGVPATILAHFLREH-GVIPEKCDLNSILFLLTPAETREKLELLVSHLVRFEQLLDEDALLEDVLPsvy 580
Cdd:COG1982 332 GL----------GISGYEVAEYLREEyGIQVELADLYNILFLLSLGDTKEDIERLVAALKELKRLYDKNAPLEEVLP--- 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 581 qryqdhyqgytlrrlcqemhqlsvndnikqlqkEMFRKAhfPEVKMAPQQAHlefiRGNCELLPLDELEGRIAVEGALPY 660
Cdd:COG1982 399 ---------------------------------LAFPPL--PELVMSPREAF----FAETELVPLEEAVGRIAAEMVIPY 439
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1236168516 661 PPGVLCVVPGEVWSGPVLRYFKALETGINALPGFA-PELQGVYI 703
Cdd:COG1982 440 PPGIPLLMPGERITEEVIDYLRALEEAGGRFPGFEdPELRTIRV 483
|
|
| Orn_deC_like |
cd00615 |
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
110-437 |
9.37e-124 |
|
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Pssm-ID: 99739 [Multi-domain] Cd Length: 294 Bit Score: 370.81 E-value: 9.37e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 110 PFFARMMDYAAGHNVTFACPGHQGGQFFRRHptgeqFYQFYGENLFRTDLCNaDVAMGDLLIHEGAAKEAQKFAAKVFNA 189
Cdd:cd00615 1 PLFEALKEYAKRGIISFHVPGHKGGRGFRKS-----FYEFYGENLFKADVTE-LTGLDDLLDPTGPIKEAQELAARAFGA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 190 DKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALIqAGATPVYLETARNP-FGFIGGIDAHCFDESYLRGl 268
Cdd:cd00615 75 KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVL-SGAVPVYLKPERNPyYGIAGGIPPETFKKALIEH- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 269 iqevmpekaqaqRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMRQCSPLLlelnendPGIM 348
Cdd:cd00615 153 ------------PDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA-------GADI 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 349 VTQSVHKQLAGFSQASQIHKKDNHIkgqerfvSHKKLNNAFMMHASTSPFYPLFASLDVNARIHqGDAGKMMWMDCVKVG 428
Cdd:cd00615 214 VVQSTHKTLPALTQGSMIHVKGDLV-------NPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELA 285
|
....*....
gi 1236168516 429 IEVRKSILQ 437
Cdd:cd00615 286 LYARQEINK 294
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13578 |
PRK13578 |
ornithine decarboxylase; Provisional |
1-719 |
0e+00 |
|
ornithine decarboxylase; Provisional
Pssm-ID: 237434 [Multi-domain] Cd Length: 720 Bit Score: 1399.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 1 MNKINVACSQGVAIYFTNEFQWVDIRDAQLNNIAAVVLSEQDANQGLWERVVESQLSIPLFIISDKQLPTDENLPPYLTA 80
Cdd:PRK13578 1 MKSLKIAASRELPSCFSTHREVVALDQTDFTDVAAVVLSVADSRSGILALIKRTGFGIPVFVATEEEEEVPAEVLPRISG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 81 LLPPAPAAREENSRQLLDAANQYLEQLLPPFFARMMDYAAGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLC 160
Cdd:PRK13578 81 VFELCESNNEFYGRQLETAASKYEENLLPPFFDTLTDYVEMGNSTFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRADMC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 161 NADVAMGDLLIHEGAAKEAQKFAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
Cdd:PRK13578 161 NADVKLGDLLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 241 YLETARNPFGFIGGIDAHCFDESYLRGLIQEVMPEKAQAQRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAW 320
Cdd:PRK13578 241 YLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 321 VGYEQFIPMMRQCSPLLLELNENDPGIMVTQSVHKQLAGFSQASQIHKKDNHIKGQERFVSHKKLNNAFMMHASTSPFYP 400
Cdd:PRK13578 321 VGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 401 LFASLDVNARIHQGDAGKMMWMDCVKVGIEVRKSILQHCRYFKPFVPEIVDGKLWHEYPTEQIAAEQRFFNFIPQERWHA 480
Cdd:PRK13578 401 LFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKWHG 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 481 FDGYAQDQYFVDPCKLMLTTPGIDVESGEYDAFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETREKLELLVSHLV 560
Cdd:PRK13578 481 FEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 561 RFEQLLDEDALLEDVLPSVYQRYQDHYQGYTLRRLCQEMHQLSVNDNIKQLQKEMFRKAHFPEVKMAPQQAHLEFIRGNC 640
Cdd:PRK13578 561 RFEKHIEDDAPLAEVLPSVYKKNPERYRGYTLRQLCQEMHDLYVSHDVKQLQKEMFRKASFPRVVMNPQDANIAYIRGEV 640
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236168516 641 ELLPLDELEGRIAVEGALPYPPGVLCVVPGEVWSGPVLRYFKALETGINALPGFAPELQGVYISKNEGEKKRVYAHVLK 719
Cdd:PRK13578 641 ELVRLSEAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQRYFLALEEGINLLPGFAPELQGVYLETDADGRKRAYGYVLK 719
|
|
| ODC_inducible |
TIGR04301 |
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ... |
1-719 |
0e+00 |
|
ornithine decarboxylase SpeF; Members of this family are known or trusted examples of ornithine decarboxylase, all encoded in the immediate vicinity of an ornithine-putrescine antiporter. Decarboxylation of ornithine to putrescine, followed by exchange of a putrescine for a new ornithine, is a proton-motive cycle that can be induced by low pH and protect a bacterium against transient exposure to acidic conditions.
Pssm-ID: 275113 [Multi-domain] Cd Length: 719 Bit Score: 1310.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 1 MNKINVACSQGVAIYFTNEFQWVDIRDAQLNNIAAVVLSEQDANQGLWERVVESQLSIPLFIISDKQLPTDENLPPYLTA 80
Cdd:TIGR04301 1 MKKLKIAVSELLPDCFSTNREVVDINNTDFTDVAAVVISVDDIKNGVLEQIEETGFGIPVFVILNDEETVPAEILPRVTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 81 LLPPAPAAREENSRQLLDAANQYLEQLLPPFFARMMDYAAGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLC 160
Cdd:TIGR04301 81 VIDLNESDIDFYGRQIETAATKYEEKLLPPFFGALVKYVEQGNSAFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRSDLC 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 161 NADVAMGDLLIHEGAAKEAQKFAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
Cdd:TIGR04301 161 NADVALGDLLIHEGAPCDAQQHAAKVFNADKTYFVLNGTSASNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 241 YLETARNPFGFIGGIDAHCFDESYLRGLIQEVMPEKAQAQRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAW 320
Cdd:TIGR04301 241 YLETARNPFGFIGGIDEHCFEEEYLRELIREVAPERAKEKRPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 321 VGYEQFIPMMRQCSPLLLELNENDPGIMVTQSVHKQLAGFSQASQIHKKDNHIKGQERFVSHKKLNNAFMMHASTSPFYP 400
Cdd:TIGR04301 321 VGYEQFIPMMKDCSPLLLELNPEDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQARYCNHKRFNNAFMMHASTSPFYP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 401 LFASLDVNARIHQGDAGKMMWMDCVKVGIEVRKSILQHCRYFKPFVPEIVDGKLWHEYPTEQIAAEQRFFNFIPQERWHA 480
Cdd:TIGR04301 401 LFAALDVNAKMHEGESGRRLWMDCVKTGIEARKLLLKNCKYIRPFIPEMVDGKPWQDYDTDQIANDLRFFNFVPGEKWHS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 481 FDGYAQDQYFVDPCKLMLTTPGIDVESGEYDAFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETREKLELLVSHLV 560
Cdd:TIGR04301 481 FEGYGENQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANFLRENGIIPEKCDLNSILFLLTPAEDMAKMQHLVAQIA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 561 RFEQLLDEDALLEDVLPSVYQRYQDHYQGYTLRRLCQEMHQLSVNDNIKQLQKEMFRKAHFPEVKMAPQQAHLEFIRGNC 640
Cdd:TIGR04301 561 RFEKLLEEDAPLAEVLPSVYKANEERYKGYTIRQLCQEMHDLYVSRNVKQLQKEMFRKAHFPEVVMNPQEANIEFVRGEA 640
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236168516 641 ELLPLDELEGRIAVEGALPYPPGVLCVVPGEVWSGPVLRYFKALETGINALPGFAPELQGVYISKNEGEKKRVYAHVLK 719
Cdd:TIGR04301 641 ELVPLEQAEGRIAAEGALPYPPGVLCVVPGEIWGGAVQQYFLALEEGINLLPGFAPELQGVYLEKDEDGRKRAYGYVLK 719
|
|
| OKR_DC_1 |
pfam01276 |
Orn/Lys/Arg decarboxylase, major domain; |
109-551 |
0e+00 |
|
Orn/Lys/Arg decarboxylase, major domain;
Pssm-ID: 396025 [Multi-domain] Cd Length: 417 Bit Score: 669.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 109 PPFFARMMDYAAGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLCNADVAMGDLLIHEGAAKEAQKFAAKVFN 188
Cdd:pfam01276 1 PPLYKALFKYVRRGNYTFHCPGHQGGAGFQKHPAGRFFYDFFGENLLRIDVCIEDVELGDLLDHEGAIKEAQKYAARVFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 189 ADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHgALIQAGATPVYLETARNPFGFIGGIDAHCFDESYLRGL 268
Cdd:pfam01276 81 ADKSYFVVNGTSGSNKTVGMAVCTPGDTILIDRNCHKSIHH-ALMLSGATPVYLEPSRNAYGIIGGIPLHEFQEETLKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 269 IQEVMPEKAqaqrpFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMRQCSPLLLElNENDPGIM 348
Cdd:pfam01276 160 IAEVPDAKG-----PRLAVITNPTYDGVLYNAKEIVDTLHHLSDPILFDSAWVGYEQFIPIYADASPMGGE-NENGPGIF 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 349 VTQSVHKQLAGFSQASQIHKKDNHIkgqerfVSHKKLNNAFMMHASTSPFYPLFASLDVNARIHQGDAGKMMWMDCVKVG 428
Cdd:pfam01276 234 VTQSVHKLLAALSQASYIHKKEGHI------VNHDRFNEAFMMHATTSPSYPIFASLDVAAKMLEGNSGRRLWNECVERA 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 429 IEVRKSI--LQHCRYFKPFVPEIVDGKLwheypteqiaaeqrFFNFIPQERWHAFDGYAQDQYFVDPCKLMLTTPGIDvE 506
Cdd:pfam01276 308 IEFRKAIdtLNNCEFFRPWNPEIVDGKE--------------CWPFHPGETWHGFEGYADNQYFLDPCKLTILTPGMD-E 372
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1236168516 507 SGEYDAFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETREK 551
Cdd:pfam01276 373 DGEYSEFGVPATIVAKWLRENGIVPEKTDLNNILFLFTPGEDRTK 417
|
|
| LdcC |
COG1982 |
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism]; |
103-703 |
0e+00 |
|
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
Pssm-ID: 441585 [Multi-domain] Cd Length: 486 Bit Score: 602.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 103 YLEQLLPPFFARMMDYAAGHNVTFACPGHQGGQFFrrhptGEQFYQFYGENLFRTDLCNaDVAMGDLLIHEGAAKEAQKF 182
Cdd:COG1982 1 YMDQLLTPLFDALKKYAERGPVSFHVPGHKGGRGF-----GREFYDFFGENVFRLDLTE-LPGLDDLHDPEGVIKEAQEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 183 AAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGaLIQAGATPVYLETA-RNPFGFIGGIDAHCFD 261
Cdd:COG1982 75 AAEAFGADRTFFLVNGTSSGNKAMILAVCGPGDKVLVPRNCHKSVIHG-LILSGAIPVYLNPEiDNELGIIGGITPEAVE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 262 ESYlrgliqevmpekaQAQRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMRqCSPLLLeln 341
Cdd:COG1982 154 EAL-------------IEHPDAKAVLITNPTYYGVCYDLKAIAELAHEHGIPVLVDEAHGAHFGFHPDLP-RSAMEA--- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 342 endPGIMVTQSVHKQLAGFSQASQIHKKDNHikgqerfVSHKKLNNAFMMHASTSPFYPLFASLDVNARIHQGDaGKMMW 421
Cdd:COG1982 217 ---GADLVVQSTHKTLGALTQSSMLHVKGGR-------VDHERVNEALMLLQSTSPSYLLMASLDVARRQMAGE-GEELL 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 422 MDCVKVGIEVRKSILQHcRYFKPFVPEIVDGKlwheypteqiaaeqrffnfipqerwhafdgyaqDQYFVDPCKLMLTTP 501
Cdd:COG1982 286 DEALELAIEARKEINKI-PGLYVFGPEDLGAP---------------------------------GVYDLDPTKLTIDVP 331
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 502 GIdvesgeydafGVPATILAHFLREH-GVIPEKCDLNSILFLLTPAETREKLELLVSHLVRFEQLLDEDALLEDVLPsvy 580
Cdd:COG1982 332 GL----------GISGYEVAEYLREEyGIQVELADLYNILFLLSLGDTKEDIERLVAALKELKRLYDKNAPLEEVLP--- 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 581 qryqdhyqgytlrrlcqemhqlsvndnikqlqkEMFRKAhfPEVKMAPQQAHlefiRGNCELLPLDELEGRIAVEGALPY 660
Cdd:COG1982 399 ---------------------------------LAFPPL--PELVMSPREAF----FAETELVPLEEAVGRIAAEMVIPY 439
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1236168516 661 PPGVLCVVPGEVWSGPVLRYFKALETGINALPGFA-PELQGVYI 703
Cdd:COG1982 440 PPGIPLLMPGERITEEVIDYLRALEEAGGRFPGFEdPELRTIRV 483
|
|
| PRK15029 |
PRK15029 |
arginine decarboxylase; Provisional |
40-703 |
1.49e-133 |
|
arginine decarboxylase; Provisional
Pssm-ID: 184989 [Multi-domain] Cd Length: 755 Bit Score: 412.32 E-value: 1.49e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 40 EQDANQGLWERVVESQLSIPLFIISDKQLPTDEnLPPYLTALLPPAPAAREENSR----QLLDAANQYLEQLLPPFFARM 115
Cdd:PRK15029 68 EHQNVRQLIGKLHERQQNVPVFLLGDREKALAA-MDRDLLELVDEFAWILEDTADfiagRAVAAMTRYRQQLLPPLFSAL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 116 MDYAAGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLCNADVAMGDLLIHEGAAKEAQKFAAKVFNADKTYFV 195
Cdd:PRK15029 147 MKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSV 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 196 LNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGaLIQAGATPVYLETARNPFGFIGGIDAHCFDESYLRGLIQEVMPE 275
Cdd:PRK15029 227 VVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQG-LILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLT 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 276 KAQAQRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMRQCSPLLLE-LNENDPGIMVTQSVH 354
Cdd:PRK15029 306 KDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEpGDHNGPTVFATHSTH 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 355 KQLAGFSQASQIHKKDNhiKGQERFvshKKLNNAFMMHASTSPFYPLFASLDVNARIHQGDAGKMMWMDCVKVGIEVRKS 434
Cdd:PRK15029 386 KLLNALSQASYIHVREG--RGAINF---SRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQA 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 435 ILQHCR--------YFKPFVPEIV----DGKL--WHEYPTEQIAAEQRFFNFIPQERWHAFDGYAQDQYFVDPCKLMLTT 500
Cdd:PRK15029 461 MARLYKeftadgswFFKPWNKEVVtdpqTGKTydFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILA 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 501 PGIDVEsGEYDAFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETREKLELLVSHLVRFEQLLDEDALLEDVLPSVY 580
Cdd:PRK15029 541 PGMGED-GELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELV 619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 581 QRYQDHYQGYTLRRLCQEMHQLSVNDNIKQLQKEMFrkAHFPEVKMAPQQAHLEFIRGNCELLPLDELEGRIAVEGALPY 660
Cdd:PRK15029 620 EQYPDTYANMGIHDLGDTMFAWLKENNPGARLNEAY--SGLPVAEITPREAYNAIVDNNVELVSIENLPGRIAANSVIPY 697
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 1236168516 661 PPGVLCVVPGEVW---SGPVLRYFKALETGINALPGFAPELQGVYI 703
Cdd:PRK15029 698 PPGIPMLLSGENFgdkNSPQVSYLRSLQSWDHHFPGFEHETEGTEI 743
|
|
| PRK15399 |
PRK15399 |
lysine decarboxylase; |
33-719 |
3.15e-130 |
|
lysine decarboxylase;
Pssm-ID: 185297 [Multi-domain] Cd Length: 713 Bit Score: 402.19 E-value: 3.15e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 33 IAAVVLSEQDANQGLWERVVESQLSIPLFIISDKQLPTDENLPPYLTAL--LPPAPAAREENSRQLLDAANQYLEQLLPP 110
Cdd:PRK15399 52 ICGVIFDWDEYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALwfFEYALGAAEDIAIRIRQYTNEYLDNITPP 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 111 FFARMMDYAAGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLCNADVAMGDLLIHEGAAKEAQKFAAKVFNAD 190
Cdd:PRK15399 132 FTKALFTYVKEGKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAE 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 191 KTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHgALIQAGATPVYLETARNPFGFIGGIDAHCFDesylRGLIQ 270
Cdd:PRK15399 212 QSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAH-LLMMSDVVPIWLKPTRNALGILGGIPRREFT----RDSIE 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 271 EVMPEKAQAQRPFRlAVIQLGTYDGTVYNarqvVDKIGHLCDY--ILFDSAWVGYEQFIPMMRQCSPLlleLNENDPG-- 346
Cdd:PRK15399 287 EKVAATTQAQWPVH-AVITNSTYDGLLYN----TDWIKQTLDVpsIHFDSAWVPYTHFHPIYQGKSGM---SGERVPGkv 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 347 IMVTQSVHKQLAGFSQASQIhkkdnHIKGQerfVSHKKLNNAFMMHASTSPFYPLFASLDVNARIHQGDAGKMMWMDCVK 426
Cdd:PRK15399 359 IFETQSTHKMLAAFSQASLI-----HIKGE---YDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVE 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 427 VGIEVRKSIlQHCR------YFKPFVPEIVDgklwheypteqiaaEQRFFNFIPQERWHAFDGYAQDQYFVDPCKLMLTT 500
Cdd:PRK15399 431 RALHFRKEV-QRLReesdgwFFDIWQPENVD--------------EAECWPVAPGEQWHGFKDADADHMFLDPVKVTILT 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 501 PGIDvESGEYDAFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETREKLELLVSHLVRFEQLLDEDALLEDVLPSVY 580
Cdd:PRK15399 496 PGMD-EQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRAYDLNLRVKNMLPDLY 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 581 QRYQDHYQGYTLRRLCQEMHQLSVNDNIKQLqkeMFRK-AHFPEVKMAPQQAHLEFIRGNCELLPLDELEGRIAVEGALP 659
Cdd:PRK15399 575 AEDPDFYRNMRIQDLAQGIHKLIRKHDLPGL---MLRAfDVLPEMIMTPHQAWQRQIKGEVETVALEQLVGRVSANMILP 651
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236168516 660 YPPGVLCVVPGEVW---SGPVLRYFKALETGINALPGFAPELQGVYisknEGEKKRVYAHVLK 719
Cdd:PRK15399 652 YPPGVPLLMPGEMIteeSRAVLDFLLMLCSIGQHYPGFETDIHGAK----RDEDGVYRVRVLK 710
|
|
| Orn_deC_like |
cd00615 |
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
110-437 |
9.37e-124 |
|
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Pssm-ID: 99739 [Multi-domain] Cd Length: 294 Bit Score: 370.81 E-value: 9.37e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 110 PFFARMMDYAAGHNVTFACPGHQGGQFFRRHptgeqFYQFYGENLFRTDLCNaDVAMGDLLIHEGAAKEAQKFAAKVFNA 189
Cdd:cd00615 1 PLFEALKEYAKRGIISFHVPGHKGGRGFRKS-----FYEFYGENLFKADVTE-LTGLDDLLDPTGPIKEAQELAARAFGA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 190 DKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALIqAGATPVYLETARNP-FGFIGGIDAHCFDESYLRGl 268
Cdd:cd00615 75 KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVL-SGAVPVYLKPERNPyYGIAGGIPPETFKKALIEH- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 269 iqevmpekaqaqRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMRQCSPLLlelnendPGIM 348
Cdd:cd00615 153 ------------PDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA-------GADI 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 349 VTQSVHKQLAGFSQASQIHKKDNHIkgqerfvSHKKLNNAFMMHASTSPFYPLFASLDVNARIHqGDAGKMMWMDCVKVG 428
Cdd:cd00615 214 VVQSTHKTLPALTQGSMIHVKGDLV-------NPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELA 285
|
....*....
gi 1236168516 429 IEVRKSILQ 437
Cdd:cd00615 286 LYARQEINK 294
|
|
| PRK15400 |
PRK15400 |
lysine decarboxylase; |
99-702 |
6.95e-119 |
|
lysine decarboxylase;
Pssm-ID: 185298 [Multi-domain] Cd Length: 714 Bit Score: 372.64 E-value: 6.95e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 99 AANQYLEQLLPPFFARMMDYAAGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLCNADVAMGDLLIHEGAAKE 178
Cdd:PRK15400 120 TTDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSGPHKE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 179 AQKFAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHgALIQAGATPVYLETARNPFGFIGGIDAH 258
Cdd:PRK15400 200 AEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTH-LMMMSDVTPIYFRPTRNAYGILGGIPQS 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 259 CFDesylRGLIQEVMPEKAQAQRPfRLAVIQLGTYDGTVYNARQVVDKIGhlCDYILFDSAWVGYEQFIPMMR-QCSpll 337
Cdd:PRK15400 279 EFQ----HATIAKRVKETPNATWP-VHAVITNSTYDGLLYNTDFIKKTLD--VKSIHFDSAWVPYTNFSPIYEgKCG--- 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 338 lELNENDPG--IMVTQSVHKQLAGFSQASQIhkkdnHIKGQerfVSHKKLNNAFMMHASTSPFYPLFASLDVNARIHQGD 415
Cdd:PRK15400 349 -MSGGRVEGkvIYETQSTHKLLAAFSQASMI-----HVKGD---VNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGN 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 416 AGKMMWMDCVKVGIEVRKSIlQHCR------YFKPFVPEIVDG-KLWheypteqiaaeqrffNFIPQERWHAFDGYAQDQ 488
Cdd:PRK15400 420 AGKRLINGSIERAIKFRKEI-KRLRtesdgwFFDVWQPDHIDTtECW---------------PLRSDSTWHGFKNIDNEH 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 489 YFVDPCKLMLTTPGIDvESGEYDAFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETREKLELLVSHLVRFEQLLDE 568
Cdd:PRK15400 484 MYLDPIKVTLLTPGMK-KDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDL 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 569 DALLEDVLPSVYQRYQDHYQGYTLRRLCQEMHQLSVNDNIKQLqkeMFRKAH-FPEVKMAPQQAHLEFIRGNCELLPLDE 647
Cdd:PRK15400 563 NLRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHHNLPDL---MYRAFEvLPTMVMTPYAAFQKELHGMTEEVYLDE 639
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1236168516 648 LEGRIAVEGALPYPPGVLCVVPGEVW---SGPVLRYFKAL-ETGINaLPGFAPELQGVY 702
Cdd:PRK15400 640 MVGRVNANMILPYPPGVPLVMPGEMIteeSRPVLEFLQMLcEIGAH-YPGFETDIHGAY 697
|
|
| OKR_DC_1_C |
pfam03711 |
Orn/Lys/Arg decarboxylase, C-terminal domain; |
576-706 |
5.27e-64 |
|
Orn/Lys/Arg decarboxylase, C-terminal domain;
Pssm-ID: 461020 [Multi-domain] Cd Length: 132 Bit Score: 208.53 E-value: 5.27e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 576 LPSVYQRYQDHYQGYTLRRLCQEMHQLSVNDNIKQLQKEMFRkaHFPEVKMAPQQAHLEFIRGNCELLPLDELEGRIAVE 655
Cdd:pfam03711 1 LPELVAAYPERYEGMGLRDLCQEMHDFYRENNVARLQKEAFR--SLPEPAMTPAEAYQELVRGEVELVPLDELEGRIAAV 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1236168516 656 GALPYPPGVLCVVPGEVW---SGPVLRYFKALETGINALPGFAPELQGVYISKN 706
Cdd:pfam03711 79 GVLPYPPGIPLLMPGERFgeeNRPILDYLLALEEFDNRFPGFETEIHGVYREED 132
|
|
| AAT_I |
cd01494 |
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ... |
176-369 |
2.81e-19 |
|
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).
Pssm-ID: 99742 [Multi-domain] Cd Length: 170 Bit Score: 85.51 E-value: 2.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 176 AKEAQKFAAKVFN--ADKTYFVLNGTSSsNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPfgfig 253
Cdd:cd01494 2 LEELEEKLARLLQpgNDKAVFVPSGTGA-NEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAG----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 254 gidahcfdesylRGLIQEVMPEKAQAQRPFRLAVIQLGTYDGTVYNARQVVDKIGH-LCDYILFDSAWVGYEQFIPMMrq 332
Cdd:cd01494 76 ------------YGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKeYGILLLVDAASAGGASPAPGV-- 141
|
170 180 190
....*....|....*....|....*....|....*..
gi 1236168516 333 cspllleLNENDPGIMVTQSVHKQLAGfSQASQIHKK 369
Cdd:cd01494 142 -------LIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170
|
|
| OKR_DC_1_N |
pfam03709 |
Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is ... |
9-103 |
9.02e-03 |
|
Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Pssm-ID: 427454 [Multi-domain] Cd Length: 111 Bit Score: 36.45 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236168516 9 SQGVAIYFTNE-FQWVDIRD--------AQLNNIAAVVLSEQDANQGLWERVVESQLSIPLFIISDKQlpTDENLP---- 75
Cdd:pfam03709 6 SRELAEALERTgREVVDATStddllaaiETFTDIAAVVLSWDDYAAGLLDEIRRRNFDLPVFLLGETH--TSEDVPadvl 83
|
90 100
....*....|....*....|....*...
gi 1236168516 76 PYLTALLPPAPAAREENSRQLLDAANQY 103
Cdd:pfam03709 84 RLIDGFIELAEDTPEFIARQIEAAAKKY 111
|
|
| |
