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Conserved domains on  [gi|1245845900|ref|WP_096141320|]
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MULTISPECIES: DUF4123 domain-containing protein [Shewanella]

Protein Classification

DUF4123 domain-containing protein( domain architecture ID 10607157)

DUF4123 domain-containing protein similar to Vibrio cholerae accessory protein VasW that plays an accessory role in VasX-mediated bacterial killing

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4123 pfam13503
Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It ...
 16-133 4.86e-15

Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.


:

Pssm-ID: 433262  Cd Length: 128  Bit Score: 67.81  E-value: 4.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1245845900  16 YLVLDAALCPEPLWFAKGAG--AECHSLF-DYRDQALVDNGPWLLHLAGQDELIKLMLEKDTHGHSALWCK-------SE 85
Cdd:pfam13503   1 YALLDGAADPDLLALLYALGpaAASVPLYaGTPLEELAEVGPWLVELDDASSLLLKLLELALLRLEEGGGPmwgwllaSA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1245845900  86 LALQPLKEALGQRLYAVKPDGETTRFRFYDPRVLHHYLTEETQARRDA 133
Cdd:pfam13503  81 APLDALARHLRSLLQVRLPDGEAALFRFYDPRVLRALLPALDPEQRAA 128
 
Name Accession Description Interval E-value
DUF4123 pfam13503
Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It ...
 16-133 4.86e-15

Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.


Pssm-ID: 433262  Cd Length: 128  Bit Score: 67.81  E-value: 4.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1245845900  16 YLVLDAALCPEPLWFAKGAG--AECHSLF-DYRDQALVDNGPWLLHLAGQDELIKLMLEKDTHGHSALWCK-------SE 85
Cdd:pfam13503   1 YALLDGAADPDLLALLYALGpaAASVPLYaGTPLEELAEVGPWLVELDDASSLLLKLLELALLRLEEGGGPmwgwllaSA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1245845900  86 LALQPLKEALGQRLYAVKPDGETTRFRFYDPRVLHHYLTEETQARRDA 133
Cdd:pfam13503  81 APLDALARHLRSLLQVRLPDGEAALFRFYDPRVLRALLPALDPEQRAA 128
PRK08321 PRK08321
1,4-dihydroxy-2-naphthoyl-CoA synthase;
83-136 9.21e-03

1,4-dihydroxy-2-naphthoyl-CoA synthase;


Pssm-ID: 181386  Cd Length: 302  Bit Score: 35.77  E-value: 9.21e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1245845900  83 KSELALQPLKEAL--------GQRLYAvkpdGETTRFRfydprvlhhYLTEETQARRDAFLE 136
Cdd:PRK08321  241 KSPTAMRMLKYAFnltddglvGQQLFA----GEATRLA---------YMTDEAQEGRDAFLE 289
 
Name Accession Description Interval E-value
DUF4123 pfam13503
Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It ...
 16-133 4.86e-15

Domain of unknown function (DUF4123); This presumed domain is functionally uncharacterized. It is about 120 amino acids in length and contains several conserved motifs that may be functionally important. This domain is sometimes associated with the FHA domain.


Pssm-ID: 433262  Cd Length: 128  Bit Score: 67.81  E-value: 4.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1245845900  16 YLVLDAALCPEPLWFAKGAG--AECHSLF-DYRDQALVDNGPWLLHLAGQDELIKLMLEKDTHGHSALWCK-------SE 85
Cdd:pfam13503   1 YALLDGAADPDLLALLYALGpaAASVPLYaGTPLEELAEVGPWLVELDDASSLLLKLLELALLRLEEGGGPmwgwllaSA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1245845900  86 LALQPLKEALGQRLYAVKPDGETTRFRFYDPRVLHHYLTEETQARRDA 133
Cdd:pfam13503  81 APLDALARHLRSLLQVRLPDGEAALFRFYDPRVLRALLPALDPEQRAA 128
PRK08321 PRK08321
1,4-dihydroxy-2-naphthoyl-CoA synthase;
83-136 9.21e-03

1,4-dihydroxy-2-naphthoyl-CoA synthase;


Pssm-ID: 181386  Cd Length: 302  Bit Score: 35.77  E-value: 9.21e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1245845900  83 KSELALQPLKEAL--------GQRLYAvkpdGETTRFRfydprvlhhYLTEETQARRDAFLE 136
Cdd:PRK08321  241 KSPTAMRMLKYAFnltddglvGQQLFA----GEATRLA---------YMTDEAQEGRDAFLE 289
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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