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Conserved domains on  [gi|1246428825|ref|WP_096346787|]
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MULTISPECIES: protein-disulfide reductase DsbD domain-containing protein [Pseudomonadaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DsbC super family cl44605
Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a ...
 74-181 2.02e-06

Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming disulfides with oxidized DsbC, DsbE, or DsbG as well as with reduced DsbD.


The actual alignment was detected with superfamily member pfam11412:

Pssm-ID: 463273 [Multi-domain]  Cd Length: 115  Bit Score: 45.03  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246428825  74 GETGEIILTLDIESGWHVNANPASMELLIPTVASssvngqslDIPTQYPRGRV-SDITLGDTalEVYDDGASIRLlpdek 152
Cdd:pfam11412  16 GDGDTLGLRWEIAPGYYLYWDKPGFEWTPPDGVT--------LGELQLPAPERkPDEFFGEV--EVYEGEVTLPL----- 80

                          90       100
                  ....*....|....*....|....*....
gi 1246428825 153 qTAALKEAGKLDMTVRVQACSDEGVCLAP 181
Cdd:pfam11412  81 -PLAAAAGATLKLEVTYQGCAEAGICYPP 108
 
Name Accession Description Interval E-value
DsbC pfam11412
Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a ...
 74-181 2.02e-06

Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming disulfides with oxidized DsbC, DsbE, or DsbG as well as with reduced DsbD.


Pssm-ID: 463273 [Multi-domain]  Cd Length: 115  Bit Score: 45.03  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246428825  74 GETGEIILTLDIESGWHVNANPASMELLIPTVASssvngqslDIPTQYPRGRV-SDITLGDTalEVYDDGASIRLlpdek 152
Cdd:pfam11412  16 GDGDTLGLRWEIAPGYYLYWDKPGFEWTPPDGVT--------LGELQLPAPERkPDEFFGEV--EVYEGEVTLPL----- 80

                          90       100
                  ....*....|....*....|....*....
gi 1246428825 153 qTAALKEAGKLDMTVRVQACSDEGVCLAP 181
Cdd:pfam11412  81 -PLAAAAGATLKLEVTYQGCAEAGICYPP 108
 
Name Accession Description Interval E-value
DsbC pfam11412
Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a ...
 74-181 2.02e-06

Disulphide bond corrector protein DsbC; This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming disulfides with oxidized DsbC, DsbE, or DsbG as well as with reduced DsbD.


Pssm-ID: 463273 [Multi-domain]  Cd Length: 115  Bit Score: 45.03  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246428825  74 GETGEIILTLDIESGWHVNANPASMELLIPTVASssvngqslDIPTQYPRGRV-SDITLGDTalEVYDDGASIRLlpdek 152
Cdd:pfam11412  16 GDGDTLGLRWEIAPGYYLYWDKPGFEWTPPDGVT--------LGELQLPAPERkPDEFFGEV--EVYEGEVTLPL----- 80

                          90       100
                  ....*....|....*....|....*....
gi 1246428825 153 qTAALKEAGKLDMTVRVQACSDEGVCLAP 181
Cdd:pfam11412  81 -PLAAAAGATLKLEVTYQGCAEAGICYPP 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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