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Conserved domains on  [gi|1246944029|ref|WP_096526801|]
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ABC-type transport auxiliary lipoprotein family protein [Candidatus Nitrosoglobus terrae]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-207 9.42e-31

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 111.63  E-value: 9.42e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246944029   1 MMSARLN--YLVCLFALTFAGCSLFGsqKEVVENHYTLEVkRVLDQPSPKARERVLEVSQFRISPRYQSQTLVYQKGDSW 78
Cdd:COG3218     1 MTPRRLLrlLLLLLLALLLAGCSSLP--APPPPTLYDLTP-PLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQ 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246944029  79 YHTEKNQAFMLPPQVLVTDQVTRYLGNSGLFGAIVEGESRLKVTHLLEGAITALYGDFTDPKGlQAVMEIQFFLLDPlAT 158
Cdd:COG3218    78 LQYYAGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDD-RD 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1246944029 159 NppKIVFQTGFRIEAEIPSSTPQALIQGWNKGLETILQNFENDLRRLFK 207
Cdd:COG3218   156 G--RVVASRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQLA 202
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-207 9.42e-31

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 111.63  E-value: 9.42e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246944029   1 MMSARLN--YLVCLFALTFAGCSLFGsqKEVVENHYTLEVkRVLDQPSPKARERVLEVSQFRISPRYQSQTLVYQKGDSW 78
Cdd:COG3218     1 MTPRRLLrlLLLLLLALLLAGCSSLP--APPPPTLYDLTP-PLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQ 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246944029  79 YHTEKNQAFMLPPQVLVTDQVTRYLGNSGLFGAIVEGESRLKVTHLLEGAITALYGDFTDPKGlQAVMEIQFFLLDPlAT 158
Cdd:COG3218    78 LQYYAGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDD-RD 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1246944029 159 NppKIVFQTGFRIEAEIPSSTPQALIQGWNKGLETILQNFENDLRRLFK 207
Cdd:COG3218   156 G--RVVASRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQLA 202
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-207 9.42e-31

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 111.63  E-value: 9.42e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246944029   1 MMSARLN--YLVCLFALTFAGCSLFGsqKEVVENHYTLEVkRVLDQPSPKARERVLEVSQFRISPRYQSQTLVYQKGDSW 78
Cdd:COG3218     1 MTPRRLLrlLLLLLLALLLAGCSSLP--APPPPTLYDLTP-PLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQ 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246944029  79 YHTEKNQAFMLPPQVLVTDQVTRYLGNSGLFGAIVEGESRLKVTHLLEGAITALYGDFTDPKGlQAVMEIQFFLLDPlAT 158
Cdd:COG3218    78 LQYYAGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDD-RD 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1246944029 159 NppKIVFQTGFRIEAEIPSSTPQALIQGWNKGLETILQNFENDLRRLFK 207
Cdd:COG3218   156 G--RVVASRRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQLA 202
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 1-205 5.91e-14

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 67.32  E-value: 5.91e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246944029   1 MMSARLNYLVCLFALTFAGCSlfgSQKEVveNHYTLEVKRVLDQPSPKARERVLEVSQFRISPRYQSQTLVYQKGDSWYH 80
Cdd:COG3009     1 MKRPLRLLLLLLLALLLAACA---SSPPT--RYYTLPPPAAPAAAAAAAAAPVIEVGPVSLPDYLDRPQIVYRTGDGRLV 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246944029  81 TEKNQAFMLPPQVLVTDQVTRYLGNSgLFGAIVEGES---------RLKVThllegaITALYGdftDPKGlQAVMEIQFF 151
Cdd:COG3009    76 IAENHRWAEPLSDQLTRALAANLAAR-LPGARVAAQPwplagrpdyRLRVD------VTRFDG---RPDG-QAVLSAQWS 144

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1246944029 152 LLDPlatNPPKIVFQTGFRIEAEIPSSTPQALIQGWNKGLETILQNFENDLRRL 205
Cdd:COG3009   145 LRRG---GGGGPLLSRRFSIEEPLAGDGYDALVAALSQALAQLADQIAAALAAL 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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