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Conserved domains on  [gi|1253007494|ref|WP_096902719|]
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MULTISPECIES: VIT family protein [Acinetobacter]

Protein Classification

VIT family protein( domain architecture ID 10116192)

VIT (vacuolar iron transporter) family protein similar to Schizosaccharomyces pombe Fe(2+)/Mn(2+) transporter Pcl1, which is involved in the transfer of iron and Mn2+ from the cytosol to the vacuole for storage of these metals

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Nodulin-21_like_1 cd02432
Nodulin-21 and CCC1-related protein family; Nodulin-21_like_1: This is a family of proteins ...
11-228 1.02e-97

Nodulin-21 and CCC1-related protein family; Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.


:

Pssm-ID: 153123 [Multi-domain]  Cd Length: 218  Bit Score: 283.71  E-value: 1.02e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  11 YIERSGWLRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEAREL 90
Cdd:cd02432     1 LIERLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEYVSVSSQRDTEKADIAKERREL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  91 KLNPEHELKELTNIYMIRGLDAELAEQVAIQLTAHNALDAHARDEIGILEHTSAQPFMAAFSSALAFTVGSLFPLVSILL 170
Cdd:cd02432    81 AEDPEAELEELADIYEERGLSPELARQVADELMAKDALEAHARDELGITEGEYANPWQAALASAISFSVGALLPLLAILL 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1253007494 171 LPEHLLDKGVMLVGVISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGSMF 228
Cdd:cd02432   161 APAAWKVPVTIIATLLALALTGYVSARLGGASVLRAILRNVIWGALAMALTYLIGRLF 218
 
Name Accession Description Interval E-value
Nodulin-21_like_1 cd02432
Nodulin-21 and CCC1-related protein family; Nodulin-21_like_1: This is a family of proteins ...
11-228 1.02e-97

Nodulin-21 and CCC1-related protein family; Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.


Pssm-ID: 153123 [Multi-domain]  Cd Length: 218  Bit Score: 283.71  E-value: 1.02e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  11 YIERSGWLRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEAREL 90
Cdd:cd02432     1 LIERLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEYVSVSSQRDTEKADIAKERREL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  91 KLNPEHELKELTNIYMIRGLDAELAEQVAIQLTAHNALDAHARDEIGILEHTSAQPFMAAFSSALAFTVGSLFPLVSILL 170
Cdd:cd02432    81 AEDPEAELEELADIYEERGLSPELARQVADELMAKDALEAHARDELGITEGEYANPWQAALASAISFSVGALLPLLAILL 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1253007494 171 LPEHLLDKGVMLVGVISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGSMF 228
Cdd:cd02432   161 APAAWKVPVTIIATLLALALTGYVSARLGGASVLRAILRNVIWGALAMALTYLIGRLF 218
Ccc1 COG1814
Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family [Inorganic ion transport and metabolism];
8-233 2.71e-89

Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family [Inorganic ion transport and metabolism];


Pssm-ID: 441419 [Multi-domain]  Cd Length: 229  Bit Score: 262.76  E-value: 2.71e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494   8 EKHYIERSGWLRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEA 87
Cdd:COG1814     2 ERHRSERSGWLRAAVLGANDGLVSTAALVAGVAGAGASPSAILLAGLAGLVAGALSMAAGEYVSVSSQRDTEEAELARER 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  88 RELKLNPEHELKELTNIYMIRGLDAELAEQVAIQLTAHNA--LDAHARDEIGILEHTSAQPFMAAFSSALAFTVGSLFPL 165
Cdd:COG1814    82 RELAEDPEGEREELAEIYRARGLSPELAEQVAEELTAHDAawLDAHAREELGIDEEELASPWQAALASFLAFAVGALLPL 161
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1253007494 166 VSILLLPEHLLDKGVMLVGVISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGSMFHVAVA 233
Cdd:COG1814   162 LPYLLAPGAAALPVSAVLTLLALALTGALKARLGGASPLRAALRTLLIGALAAAVTYLVGLLFGVAVG 229
VIT1 pfam01988
VIT family; This family includes the vacuolar Fe2+/Mn2+ uptake transporter Ccc1 and the ...
18-226 2.07e-69

VIT family; This family includes the vacuolar Fe2+/Mn2+ uptake transporter Ccc1 and the vacuolar iron transporter VIT1.


Pssm-ID: 460408 [Multi-domain]  Cd Length: 212  Bit Score: 211.53  E-value: 2.07e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  18 LRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEARELKLNPEHE 97
Cdd:pfam01988   1 LRAAVLGANDGLVSTFALVAGVAGASLSSKVVLLAGLAGLVAGAISMAAGEYVSVSSQRDTEEAELARERRELENDPEAE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  98 LKELTNIYMIRGLDAELAEQ-VAIQLTAHNA-LDAHARDEIGILEHTSAQPFMAAFSSALAFTVGSLFPLVSILLLPE-H 174
Cdd:pfam01988  81 LEELAEIYEARGLSEELARQvVAELLKNPDAfLDAMMREELGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFLPSgI 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1253007494 175 LLDKGVMLVGVISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGS 226
Cdd:pfam01988 161 PALIVSIILTLLALFLLGAVKARLGGASPLRSALRMLLIGALAAAATYGIGR 212
 
Name Accession Description Interval E-value
Nodulin-21_like_1 cd02432
Nodulin-21 and CCC1-related protein family; Nodulin-21_like_1: This is a family of proteins ...
11-228 1.02e-97

Nodulin-21 and CCC1-related protein family; Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.


Pssm-ID: 153123 [Multi-domain]  Cd Length: 218  Bit Score: 283.71  E-value: 1.02e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  11 YIERSGWLRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEAREL 90
Cdd:cd02432     1 LIERLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEYVSVSSQRDTEKADIAKERREL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  91 KLNPEHELKELTNIYMIRGLDAELAEQVAIQLTAHNALDAHARDEIGILEHTSAQPFMAAFSSALAFTVGSLFPLVSILL 170
Cdd:cd02432    81 AEDPEAELEELADIYEERGLSPELARQVADELMAKDALEAHARDELGITEGEYANPWQAALASAISFSVGALLPLLAILL 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1253007494 171 LPEHLLDKGVMLVGVISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGSMF 228
Cdd:cd02432   161 APAAWKVPVTIIATLLALALTGYVSARLGGASVLRAILRNVIWGALAMALTYLIGRLF 218
Ccc1 COG1814
Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family [Inorganic ion transport and metabolism];
8-233 2.71e-89

Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family [Inorganic ion transport and metabolism];


Pssm-ID: 441419 [Multi-domain]  Cd Length: 229  Bit Score: 262.76  E-value: 2.71e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494   8 EKHYIERSGWLRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEA 87
Cdd:COG1814     2 ERHRSERSGWLRAAVLGANDGLVSTAALVAGVAGAGASPSAILLAGLAGLVAGALSMAAGEYVSVSSQRDTEEAELARER 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  88 RELKLNPEHELKELTNIYMIRGLDAELAEQVAIQLTAHNA--LDAHARDEIGILEHTSAQPFMAAFSSALAFTVGSLFPL 165
Cdd:COG1814    82 RELAEDPEGEREELAEIYRARGLSPELAEQVAEELTAHDAawLDAHAREELGIDEEELASPWQAALASFLAFAVGALLPL 161
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1253007494 166 VSILLLPEHLLDKGVMLVGVISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGSMFHVAVA 233
Cdd:COG1814   162 LPYLLAPGAAALPVSAVLTLLALALTGALKARLGGASPLRAALRTLLIGALAAAVTYLVGLLFGVAVG 229
VIT1 pfam01988
VIT family; This family includes the vacuolar Fe2+/Mn2+ uptake transporter Ccc1 and the ...
18-226 2.07e-69

VIT family; This family includes the vacuolar Fe2+/Mn2+ uptake transporter Ccc1 and the vacuolar iron transporter VIT1.


Pssm-ID: 460408 [Multi-domain]  Cd Length: 212  Bit Score: 211.53  E-value: 2.07e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  18 LRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEARELKLNPEHE 97
Cdd:pfam01988   1 LRAAVLGANDGLVSTFALVAGVAGASLSSKVVLLAGLAGLVAGAISMAAGEYVSVSSQRDTEEAELARERRELENDPEAE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  98 LKELTNIYMIRGLDAELAEQ-VAIQLTAHNA-LDAHARDEIGILEHTSAQPFMAAFSSALAFTVGSLFPLVSILLLPE-H 174
Cdd:pfam01988  81 LEELAEIYEARGLSEELARQvVAELLKNPDAfLDAMMREELGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFLPSgI 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1253007494 175 LLDKGVMLVGVISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGS 226
Cdd:pfam01988 161 PALIVSIILTLLALFLLGAVKARLGGASPLRSALRMLLIGALAAAATYGIGR 212
Nodulin-21_like_2 cd02433
Nodulin-21 and CCC1-related protein family; Nodulin-21_like_2: This is a family of proteins ...
15-228 3.86e-49

Nodulin-21 and CCC1-related protein family; Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.


Pssm-ID: 153124 [Multi-domain]  Cd Length: 234  Bit Score: 160.65  E-value: 3.86e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  15 SGWLRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEARELKLNP 94
Cdd:cd02433    17 SGNLRAAVFGANDGLVSNLALVMGVAGAGVSNQTILLTGLAGLLAGALSMAAGEYVSVTSQRELLEASIPDERRELRKHP 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  95 EHELKELTNIYMIRGLDAELAEQVAIQLTAHN--ALDAHARDEIGILEHTSAQPFMAAFSSALAFTVGSLFPLVSILLLP 172
Cdd:cd02433    97 LEEAAELALIYRAKGLDEEEAKRVASQLMNDPeqALDTLAREELGLDPELLGNPWSAAVSSFLLFALGALIPVLPFLFGM 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1253007494 173 EHLLDKGVMLVGV-ISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGSMF 228
Cdd:cd02433   177 SGLAALVLSVLLVgLALLATGAVTGLLSGRSPGISALRQLAIGGGAAAVTYLLGLLF 233
CCC1_like cd01059
CCC1-related family of proteins; CCC1_like: This protein family includes the proteins related ...
18-228 1.19e-23

CCC1-related family of proteins; CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.


Pssm-ID: 153121  Cd Length: 143  Bit Score: 92.29  E-value: 1.19e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  18 LRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDieqndlamearelklnpehe 97
Cdd:cd01059     1 LRAAVLGANDGLVSTFALVAGVAAAGDSTKAILLAGLAGLVAGAISMAAGEYVSVKSQRD-------------------- 60
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  98 lkeltniymirgldaelaeqvaiqltahnaldahardeigilehtsaqpfMAAFSSALAFTVGSLFPLVSILLLPEHLLD 177
Cdd:cd01059    61 --------------------------------------------------KAALASGLSFILGGLLPLLPYLLLPAGSLA 90
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1253007494 178 KG--VMLVGVISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGSMF 228
Cdd:cd01059    91 LAvsVALVVALALFLLGAFVAKLGGAKKIRAALRMVVLGLLAAALTYLLGRLF 143
Nodulin-21_like_3 cd02434
Nodulin-21 and CCC1-related protein family; Nodulin-21_like_3: This is a family of proteins ...
16-228 1.67e-23

Nodulin-21 and CCC1-related protein family; Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.


Pssm-ID: 153125  Cd Length: 225  Bit Score: 93.95  E-value: 1.67e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  16 GWLRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEARELKLNPE 95
Cdd:cd02434     1 EYLKSIVFGGLDGIVTIFAIVAGVVGAGLSPFVILIIGFANLLADGISMAAGEYVSTKAERDFLHSEKKREEWEIENYPE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  96 HELKELTNIYMIRGLDAELAEQVAIQLTAHNAL--DAHARDEIGIL-EHTSAQPFMAAFSSALAFTVGSLFPLVSILLLP 172
Cdd:cd02434    81 GEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLfvDIMMTEELGLIpDDELPSPLKTALVTFLSFLVFGIIPLLPYLLGL 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1253007494 173 EHLLDKG--------VMLVGVISLGVMGALASYVGGASMWKGALRVMIWGIVAMVFSAWIGSMF 228
Cdd:cd02434   161 YYYSQKEidsvfalsILIFVAFTLFLLGSFKSKLYNGKWIISGIIMLINGAASGGVSFFLGVLF 224
Nodulin-21 cd02436
Nodulin-21; Nodulin-21: This is a family of proteins that may be unique to certain plants. The ...
17-167 2.68e-20

Nodulin-21; Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.


Pssm-ID: 153127  Cd Length: 152  Bit Score: 83.84  E-value: 2.68e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  17 WLRAAVLGANDGIISVTSLVVGMAASGASSQTLLITCIAGLISGAASMAAGEYISVKSQQDIEQNDLAMEARElklnpeh 96
Cdd:cd02436     2 WLRAAVLGANDGLVSVASLMLGVGAVCADEHAMLLSGLAGLVAGACPMAIGEFVRVYRQYRRPRAARCLRGRN------- 74
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1253007494  97 elkeltniyMIRGLDAELAEQvaiqltahnaldahardeigILEHTSAQPFMAAFSSALAFTVGSLFPLVS 167
Cdd:cd02436    75 ---------RARGPAPDSEPE--------------------GLRRQAPSPSSAATASALSFAAGALFPLLA 116
CCC1 cd02435
CCC1; CCC1: This domain is present in the CCC1, an iron and manganese transporter of ...
2-219 1.23e-06

CCC1; CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.


Pssm-ID: 153126 [Multi-domain]  Cd Length: 241  Bit Score: 47.70  E-value: 1.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494   2 PHSYHLEKHYIERS----GWLRAAVLGANDGIISVTSLVVGMAASGASSqtLLITC-IAGLISGAASMAAGEYISVKSQQ 76
Cdd:cd02435     2 PSSQHSTSSHSEKHftspRIVRDIIIGLSDGLTVPFALTAGLSSLGDTK--LVITGgLAELAAGAISMGLGGYLAAKSER 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494  77 DIEQNDLAMEARELKLNPEHELKELTNI----YMIRGLDAELAEQVAIQLTAHNALDAHARDEIGILEHTSAQPFMAAFS 152
Cdd:cd02435    80 DHYQREHKRKQEAVEASPSTEQEEIILYdlvqYGLVPLETAASTVTDLRKNPQALVDFLMRFGLGLEEPDTSRALISALT 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1253007494 153 SALAFTVGSLFPLVSILLLPEhlLDKGVML---VGVISLGVMGALASYVGGAsmWKGAlRVMIWGIVAMV 219
Cdd:cd02435   160 IGLSYFIGGLIPLLPYFFVST--VGEALLLsviVTLVALFVFGYVKTWFTGG--WGGA-GGGVWGAVQML 224
Ferritin_CCC1_C cd02431
CCC1-related domain of ferritin; Ferritin_CCC1_like_C: The proteins of this family contain two ...
18-78 8.49e-06

CCC1-related domain of ferritin; Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.


Pssm-ID: 153122  Cd Length: 149  Bit Score: 44.23  E-value: 8.49e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1253007494  18 LRAAVLGANDGIISVTSLVVGMaaSGASSQTLLITcIAGLI---SGAASMAAGEYISVKSQQDI 78
Cdd:cd02431     1 VGDFVLGLNDALVEITGALAGL--TGAINNTILVG-LSGLIvgiAAALSMAIGAYLSTKSESGV 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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