|
Name |
Accession |
Description |
Interval |
E-value |
| artM |
PRK11122 |
arginine ABC transporter permease ArtM; |
1-222 |
2.77e-146 |
|
arginine ABC transporter permease ArtM;
Pssm-ID: 182978 [Multi-domain] Cd Length: 222 Bit Score: 406.27 E-value: 2.77e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 1 MLDYLPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFPSIQNV 80
Cdd:PRK11122 1 MLEYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 81 PWLWHLLSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTLRILLPYAFKRALSSYSNEVVLVFK 160
Cdd:PRK11122 81 PWLWHLLSQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLRILLPYAFKRALSSYSNEVVLVFK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1254193673 161 STSLAYTITLMEVMGHGQLLYGRTYDITVYAAAGLIYLVVNGLLTLMMRLIEKRALAFEHRN 222
Cdd:PRK11122 161 STSLAYTITLMDVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLLMRLIERKALAFERRN 222
|
|
| ArtM |
COG4160 |
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ... |
1-222 |
2.47e-101 |
|
ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443325 [Multi-domain] Cd Length: 229 Bit Score: 292.77 E-value: 2.47e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 1 MLDYLPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFPSIQNv 80
Cdd:COG4160 6 LFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFEWVRE- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 81 PWLWHLLSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTL-RILLPYAFKRALSSYSNEVVLVF 159
Cdd:COG4160 85 SWLWPLLRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFrRIILPSALRRALPAYSNEVILML 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1254193673 160 KSTSLAYTITLMEVMGHGQLLYGRTYD-ITVYAAAGLIYLVVNGLLTLMMRLIEKRALAFEHRN 222
Cdd:COG4160 165 KATALASTITVMDLTGVARRIYSRTYDpFEPFLIAALIYLVITFLLTRLFRLLERRLLRHLRPR 228
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
5-214 |
2.28e-21 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 87.99 E-value: 2.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 5 LPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYgpgQFPSIQnvpwlw 84
Cdd:TIGR03003 10 LPTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYY---VLPDIG------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 85 hLLSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTLR-ILLPYAFKRALSSYSNEVVLVFKSTS 163
Cdd:TIGR03003 81 -IRLPALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRhIILPQAIPPIIPALGNYLVAMFKETP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1254193673 164 LAYTITLMEVMGHGQLLYGRTYD-ITVYAAAGLIYLVVNGLLTLMMRLIEKR 214
Cdd:TIGR03003 160 VLSAITVLELMNQAKSIGNSTFRyLEPMTLVGVFFLILSIISVFFLRRLEAR 211
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
15-206 |
1.32e-16 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 74.62 E-value: 1.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 15 SLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFpsiqnvpWLWHLLSQPWLCA 94
Cdd:cd06261 4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL-------LGWGILPGLGLPA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 95 LIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEV 173
Cdd:cd06261 77 LILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRrIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA 156
|
170 180 190
....*....|....*....|....*....|....
gi 1254193673 174 MGHGQLLYG-RTYDITVYAAAGLIYLVVNGLLTL 206
Cdd:cd06261 157 PGPGTGLLLiFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
42-214 |
3.66e-08 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 51.53 E-value: 3.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 42 PVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFpsiqnvpWLWHLlsqpWLCALIALSLNSAAYTTQLFYGAVRAIPSGQ 121
Cdd:pfam00528 14 RRLDRLLRPLIDLLQALPSFVLAILLVVIAILS-------ILGHG----ILPAIILALLGWAGYARLIRRAALRSLPSDL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 122 WQSCAALGMNRKDTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEVMG----HGQLLYGRTYDITVYAAAGLI 196
Cdd:pfam00528 83 VEAARALGASRWQIFRkIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGllliEAILGYDYPEIQGPVLAAALI 162
|
170
....*....|....*...
gi 1254193673 197 YLVVNGLLTLMMRLIEKR 214
Cdd:pfam00528 163 LLLLNLLVDILQRLLDPR 180
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| artM |
PRK11122 |
arginine ABC transporter permease ArtM; |
1-222 |
2.77e-146 |
|
arginine ABC transporter permease ArtM;
Pssm-ID: 182978 [Multi-domain] Cd Length: 222 Bit Score: 406.27 E-value: 2.77e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 1 MLDYLPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFPSIQNV 80
Cdd:PRK11122 1 MLEYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 81 PWLWHLLSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTLRILLPYAFKRALSSYSNEVVLVFK 160
Cdd:PRK11122 81 PWLWHLLSQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLRILLPYAFKRALSSYSNEVVLVFK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1254193673 161 STSLAYTITLMEVMGHGQLLYGRTYDITVYAAAGLIYLVVNGLLTLMMRLIEKRALAFEHRN 222
Cdd:PRK11122 161 STSLAYTITLMDVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLLMRLIERKALAFERRN 222
|
|
| ArtM |
COG4160 |
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ... |
1-222 |
2.47e-101 |
|
ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443325 [Multi-domain] Cd Length: 229 Bit Score: 292.77 E-value: 2.47e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 1 MLDYLPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFPSIQNv 80
Cdd:COG4160 6 LFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFEWVRE- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 81 PWLWHLLSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTL-RILLPYAFKRALSSYSNEVVLVF 159
Cdd:COG4160 85 SWLWPLLRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFrRIILPSALRRALPAYSNEVILML 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1254193673 160 KSTSLAYTITLMEVMGHGQLLYGRTYD-ITVYAAAGLIYLVVNGLLTLMMRLIEKRALAFEHRN 222
Cdd:COG4160 165 KATALASTITVMDLTGVARRIYSRTYDpFEPFLIAALIYLVITFLLTRLFRLLERRLLRHLRPR 228
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
1-214 |
8.26e-59 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 184.51 E-value: 8.26e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 1 MLDYLPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGpgqfpsiqnV 80
Cdd:COG0765 8 LLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFG---------L 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 81 PWLWHLLSqPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTLR-ILLPYAFKRALSSYSNEVVLVF 159
Cdd:COG0765 79 PLLGIDLS-PFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRrIILPQALRIILPPLGNEFISLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1254193673 160 KSTSLAYTITLMEVMGHGQLLYGRTYD-ITVYAAAGLIYLVVNGLLTLMMRLIEKR 214
Cdd:COG0765 158 KDTSLVSVIGVPELTRAAQQIASRTFRpFEVYLVAALIYLVLTLPLSLLARRLERR 213
|
|
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
2-215 |
3.21e-39 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 134.49 E-value: 3.21e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 2 LDYLPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFpSIQnvp 81
Cdd:PRK15100 9 IDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQF-GIE--- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 82 wlwhllSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTL-RILLPYAFKRALSSYSNEVVLVFK 160
Cdd:PRK15100 85 ------LDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLrRAILPQAARTALPPLSNSFISLVK 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1254193673 161 STSLAYTITLMEVMGHGQLLYGRTYDI-TVYAAAGLIYLVVNGLLTLMMRLIEKRA 215
Cdd:PRK15100 159 DTSLAATIQVPELFRQAQLITSRTLEVfTMYLAASLIYWIMATVLSALQNRFENQL 214
|
|
| PRK15069 |
PRK15069 |
histidine ABC transporter permease HisM; |
9-218 |
1.45e-36 |
|
histidine ABC transporter permease HisM;
Pssm-ID: 185029 [Multi-domain] Cd Length: 234 Bit Score: 128.24 E-value: 1.45e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 9 LKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFPSIQNVPWLWHLLS 88
Cdd:PRK15069 20 FTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGMYSLEIVRGTDLLDAFFR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 89 QPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNR-KDTLRILLPYAFKRALSSYSNEVVLVFKSTSLAYT 167
Cdd:PRK15069 100 SGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTfKLYRRIILPSALRRALPAYSNEVILMLHATTLAFT 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1254193673 168 ITLMEVMGHGQLLYGRTYD-ITVYAAAGLIYLVVNGLLTLMMRLIEKRALAF 218
Cdd:PRK15069 180 ATVPDILKIARDINSATYQpFQAFGIAAVLYLIISFVLISLFRRAERRWLAH 231
|
|
| PRK11123 |
PRK11123 |
arginine ABC transporter permease ArtQ; |
1-222 |
4.20e-32 |
|
arginine ABC transporter permease ArtQ;
Pssm-ID: 182979 [Multi-domain] Cd Length: 238 Bit Score: 116.70 E-value: 4.20e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 1 MLDYLPeLLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQF-----P 75
Cdd:PRK11123 1 MNEFFP-LASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLlltlsD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 76 SIQNVPWLWHLLSQ---------PWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDT-LRILLPYAFK 145
Cdd:PRK11123 80 GFTLNLGFVQIPVQmdienfevsPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIfFRLVMPQMWR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1254193673 146 RALSSYSNEVVLVFKSTSLAYTITLMEVMGHGQLLYGRTYD-ITVYAAAGLIYLVVNGLLTLMMRLIEKRALAFEHRN 222
Cdd:PRK11123 160 HALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEpFTWYIIAAAIYLVITLISQYILKRIELRATRFERRP 237
|
|
| glnP |
PRK09494 |
glutamine ABC transporter permease protein; Reviewed |
3-214 |
1.05e-24 |
|
glutamine ABC transporter permease protein; Reviewed
Pssm-ID: 181907 [Multi-domain] Cd Length: 219 Bit Score: 96.66 E-value: 1.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 3 DYLPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYG-PGQFPSIQnvp 81
Cdd:PRK09494 10 PAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFAlPMAFNDLR--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 82 wlwhllSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTLR-ILLPYAFKRALSSYSNEVVLVFK 160
Cdd:PRK09494 87 ------IDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRyVIGPLALRRMLPPLGNQWIISIK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1254193673 161 STSLAYTITLMEVMGHGQ-LLYGRTYDITVYAAAGLIYLVVNGLLTLMMRLIEKR 214
Cdd:PRK09494 161 DTSLFIVIGVAELTRQGQeIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERR 215
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
5-214 |
2.28e-21 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 87.99 E-value: 2.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 5 LPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYgpgQFPSIQnvpwlw 84
Cdd:TIGR03003 10 LPTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYY---VLPDIG------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 85 hLLSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTLR-ILLPYAFKRALSSYSNEVVLVFKSTS 163
Cdd:TIGR03003 81 -IRLPALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRhIILPQAIPPIIPALGNYLVAMFKETP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1254193673 164 LAYTITLMEVMGHGQLLYGRTYD-ITVYAAAGLIYLVVNGLLTLMMRLIEKR 214
Cdd:TIGR03003 160 VLSAITVLELMNQAKSIGNSTFRyLEPMTLVGVFFLILSIISVFFLRRLEAR 211
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
15-206 |
1.32e-16 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 74.62 E-value: 1.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 15 SLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFpsiqnvpWLWHLLSQPWLCA 94
Cdd:cd06261 4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL-------LGWGILPGLGLPA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 95 LIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEV 173
Cdd:cd06261 77 LILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRrIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA 156
|
170 180 190
....*....|....*....|....*....|....
gi 1254193673 174 MGHGQLLYG-RTYDITVYAAAGLIYLVVNGLLTL 206
Cdd:cd06261 157 PGPGTGLLLiFAILFPGDLGVAAAVALILLLLSL 190
|
|
| HEQRo_perm_3TM |
TIGR01726 |
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ... |
4-112 |
6.41e-16 |
|
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130787 [Multi-domain] Cd Length: 99 Bit Score: 70.25 E-value: 6.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 4 YLPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFpsiqnvpwl 83
Cdd:TIGR01726 1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLI--------- 71
|
90 100
....*....|....*....|....*....
gi 1254193673 84 wHLLSQPWLCALIALSLNSAAYTTQLFYG 112
Cdd:TIGR01726 72 -GIRLSPLTAAVIALTLFYGAYLAEIFRG 99
|
|
| PRK15135 |
PRK15135 |
histidine ABC transporter permease HisQ; |
8-214 |
1.63e-12 |
|
histidine ABC transporter permease HisQ;
Pssm-ID: 185089 [Multi-domain] Cd Length: 228 Bit Score: 64.43 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 8 LLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPG-QFPSIQNVPWLWHL 86
Cdd:PRK15135 9 ILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQiALNSVTEALGVGQI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 87 LSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTL-RILLPYAFKRALSSYSNEVVLVFKSTSLA 165
Cdd:PRK15135 89 DIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFrRIMFPAMMRYALPGIGNNWQVILKATALV 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1254193673 166 YTITLMEVMGHGQLLYGRTYDITVYA-AAGLIYLVVNGLLTLMMRLIEKR 214
Cdd:PRK15135 169 SLLGLEDVVKATQLAGKSTWEPFYFAiVCGVIYLVFTTVSNGVLLWLERR 218
|
|
| PRK15107 |
PRK15107 |
glutamate/aspartate ABC transporter permease GltK; |
5-214 |
6.34e-11 |
|
glutamate/aspartate ABC transporter permease GltK;
Pssm-ID: 185062 [Multi-domain] Cd Length: 224 Bit Score: 59.84 E-value: 6.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 5 LPELLKGLHTSLTLTIASLIAALVLSLLCTIVLSLKVPVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFpsIQNVPWLW 84
Cdd:PRK15107 13 LPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGF--LQNVLGLS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 85 HLLSQPWLCALIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNRKDTLR-ILLPYAFKRALSSYSNEVVLVFKSTS 163
Cdd:PRK15107 91 PKTDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKlIILPQAFRAMVPLLLTQGIVLFQDTS 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1254193673 164 LAYTITLMEVMGHGQLLYGRT-YDITVYAAAGLIYLVVNGLLTLMMRLIEKR 214
Cdd:PRK15107 171 LVYVLSLADFFRTASTIGERDgTQVEMILFAGFVYFVISLSASLLVSYLKKR 222
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
42-214 |
3.66e-08 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 51.53 E-value: 3.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 42 PVLNWLVKGYITVFTGTPLLVQIFLIYYGPGQFpsiqnvpWLWHLlsqpWLCALIALSLNSAAYTTQLFYGAVRAIPSGQ 121
Cdd:pfam00528 14 RRLDRLLRPLIDLLQALPSFVLAILLVVIAILS-------ILGHG----ILPAIILALLGWAGYARLIRRAALRSLPSDL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 122 WQSCAALGMNRKDTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEVMG----HGQLLYGRTYDITVYAAAGLI 196
Cdd:pfam00528 83 VEAARALGASRWQIFRkIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGllliEAILGYDYPEIQGPVLAAALI 162
|
170
....*....|....*...
gi 1254193673 197 YLVVNGLLTLMMRLIEKR 214
Cdd:pfam00528 163 LLLLNLLVDILQRLLDPR 180
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
2-132 |
1.21e-03 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 38.91 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1254193673 2 LDYLPELLKGLHTSLTL----TIASLIAALVLSLLCTIVLSlKVPVLNWLVKGYITVFTGTPLLV--QIFLIYYGPGQFP 75
Cdd:COG3639 43 WSYLPDLLSALLETLAIallgTLLGAVLALPLAFLAARNLA-PNPWVRLLARRLLNVLRAIPELVwaLIFVAAVGLGPFA 121
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1254193673 76 SIqnvpwlwhllsqpwlcalIALSLNSAAYTTQLFYGAVRAIPSGQWQSCAALGMNR 132
Cdd:COG3639 122 GV------------------LALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASR 160
|
|
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