|
Name |
Accession |
Description |
Interval |
E-value |
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
4-437 |
0e+00 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 703.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 4 FSAFDNALRSLESIPLARVAGRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG 83
Cdd:COG1157 1 LDRLARLLARLEELPPVRVSGRVTRVVGLLIEAVGPDASIGELCEIETADGRPVLAEVVGFRGDRVLLMPLGDLEGISPG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 84 ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRV 163
Cdd:COG1157 81 ARVVPTGRPLSVPVGDGLLGRVLDGLGRPLDGKGPLPGEERRPLDAPPPNPLERARITEPLDTGVRAIDGLLTVGRGQRI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 164 GLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAA 243
Cdd:COG1157 161 GIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEDDLGEEGLARSVVVVATSDEPPLMRLRAAYTATAIAE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 244 WFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESaGSMTAIYTVLAEGDDQQDPI 323
Cdd:COG1157 241 YFRDQGKNVLLLMDSLTRFAMAQREIGLAAGEPPATRGYPPSVFALLPRLLERAGNGGK-GSITAFYTVLVEGDDMNDPI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 324 VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVD 403
Cdd:COG1157 320 ADAVRGILDGHIVLSRKLAERGHYPAIDVLASISRVMPDIVSPEHRALARRLRRLLARYEENEDLIRIGAYQPGSDPELD 399
|
410 420 430
....*....|....*....|....*....|....
gi 1255344572 404 KAVKMFPAIERFLRQEMREPASLELVQSRLQILF 437
Cdd:COG1157 400 EAIALIPAIEAFLRQGMDERVSFEESLAQLAELL 433
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
6-438 |
0e+00 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 694.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 6 AFDNALRSLESIPLARVAGRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGAR 85
Cdd:PRK07196 1 ALDHALKSIENIHLARVAGRLVRVTGLLLESVGCRLAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLGGAR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 86 VFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGL 165
Cdd:PRK07196 81 VFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 166 MAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWF 245
Cdd:PRK07196 161 MAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYY 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 246 RDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVD 325
Cdd:PRK07196 241 RDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 326 CARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKA 405
Cdd:PRK07196 321 CARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADPMADQA 400
|
410 420 430
....*....|....*....|....*....|...
gi 1255344572 406 VKMFPAIERFLRQEMREPASLELVQSRLQILFP 438
Cdd:PRK07196 401 VHYYPAITQFLRQEVGHPALFSASVEQLTGMFP 433
|
|
| FliI_clade1 |
TIGR03496 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
24-427 |
0e+00 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274607 [Multi-domain] Cd Length: 411 Bit Score: 681.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 24 GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGESWLG 103
Cdd:TIGR03496 1 GRVTRVVGLVLEAVGLRAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLGGPLRLPVGDSLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 104 RVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQ 183
Cdd:TIGR03496 81 RVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 184 TKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA 263
Cdd:TIGR03496 161 TEADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 264 MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGN-SESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLA 342
Cdd:TIGR03496 241 MAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNgEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRELA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 343 EAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMRE 422
Cdd:TIGR03496 321 EQGHYPAIDILASISRVMPDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQAIALYPRIEAFLQQGMRE 400
|
....*
gi 1255344572 423 PASLE 427
Cdd:TIGR03496 401 RASFE 405
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
18-441 |
0e+00 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 579.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 18 PLARVAGRLVRLNGILLESVGCPLMTGQLCRIESANHTLIdAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILI 97
Cdd:PRK08972 21 FRAVASGKLVRVVGLTLEATGCRAPVGSLCSIETMAGELE-AEVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 98 GESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLL 177
Cdd:PRK08972 100 GMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 178 GMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVD 257
Cdd:PRK08972 180 GMMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMD 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 258 SLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGN-SESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIV 336
Cdd:PRK08972 260 SLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNgGPGQGSITAFYTVLTEGDDLQDPIADASRAILDGHIV 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 337 LTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFL 416
Cdd:PRK08972 340 LSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYKQGSDPRIDNAIRLQPAMNAFL 419
|
410 420
....*....|....*....|....*
gi 1255344572 417 RQEMREPASLELVQSRLQILFPGAK 441
Cdd:PRK08972 420 QQTMKEAVPYDMSVNMLKQLAAQCK 444
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
13-440 |
0e+00 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 548.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 13 SLESIPLARvaGRLVRLNGILLESVGCPLMTGQLCRIE---SANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPE 89
Cdd:PRK05688 20 SLPAQPVVE--GRLLRMVGLTLEAEGLRAAVGSRCLVInddSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 90 EKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGS 169
Cdd:PRK05688 98 ADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGT 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 170 GVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRG 249
Cdd:PRK05688 178 GVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKG 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 250 HHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESA-GSMTAIYTVLAEGDDQQDPIVDCAR 328
Cdd:PRK05688 258 KNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGgGSITAFYTVLSEGDDQQDPIADSAR 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 329 AVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKM 408
Cdd:PRK05688 338 GVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIAR 417
|
410 420 430
....*....|....*....|....*....|..
gi 1255344572 409 FPAIERFLRQEMREPASLELVQSRLQILFPGA 440
Cdd:PRK05688 418 FPHLVQFLRQGLRENVSLAQSREQLAAIFAPA 449
|
|
| fliI_yscN |
TIGR01026 |
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP ... |
7-438 |
7.87e-178 |
|
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273401 [Multi-domain] Cd Length: 440 Bit Score: 504.21 E-value: 7.87e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 7 FDNALRSLESIPLARVAGRLVRLNGILLESVGCPLMTGQLCRIESAN-HTLIDAQAVGFNRDITYLMPFKQPVGLMAGAR 85
Cdd:TIGR01026 8 FYNRLCQEMDLRLVKRVGRVTKVKGLLIEAVGPQASVGDLCLIERRGsEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 86 VFPEEKAHDILIGESWLGRVVNGLGEPLDGKGR-LNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVG 164
Cdd:TIGR01026 88 VLATGEGLSIKVGDGLLGRVLDGLGKPIDGKGKfLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 165 LMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAW 244
Cdd:TIGR01026 168 IFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEY 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 245 FRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGnSESAGSMTAIYTVLAEGDDQQDPIV 324
Cdd:TIGR01026 248 FRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAG-ASGKGSITAFYTVLVEGDDMNEPIA 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 325 DCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDK 404
Cdd:TIGR01026 327 DSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRELDF 406
|
410 420 430
....*....|....*....|....*....|....
gi 1255344572 405 AVKMFPAIERFLRQEMREPASLELVQSRLQILFP 438
Cdd:TIGR01026 407 AIAKYPKLERFLKQGINEKVNFEESLQQLEEIFR 440
|
|
| FliI_clade2 |
TIGR03497 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
24-437 |
2.03e-174 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274608 [Multi-domain] Cd Length: 413 Bit Score: 494.52 E-value: 2.03e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 24 GRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGESWLG 103
Cdd:TIGR03497 1 GKVTRVIGLTIESKGPKASIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 104 RVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQ 183
Cdd:TIGR03497 81 RVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 184 TKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYA 263
Cdd:TIGR03497 161 AKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 264 MAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESaGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAE 343
Cdd:TIGR03497 241 MAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQK-GSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 344 AGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREP 423
Cdd:TIGR03497 320 KNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSFLKQGIDEK 399
|
410
....*....|....
gi 1255344572 424 ASLELVQSRLQILF 437
Cdd:TIGR03497 400 FTFEETVQLLKELL 413
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
5-439 |
2.07e-174 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 496.23 E-value: 2.07e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 5 SAFDNALRSLESIPLARVAGRLVRLNGILLESVGCPLMTGQLCRIESANHT---LIDAQAVGFNRDITYLMPFKQPVGLM 81
Cdd:PRK07960 10 TTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGLQLPLGATCVIERQNGSethEVESEVVGFNGQRLFLMPLEEVEGIL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 82 AGARVFPEEKAHD-------ILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGL 154
Cdd:PRK07960 90 PGARVYARNISGEglqsgkqLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINAL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 155 LTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKA 234
Cdd:PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQG 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 235 TELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSES-AGSMTAIYTVL 313
Cdd:PRK07960 250 AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISgGGSITAFYTVL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 314 AEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGG 393
Cdd:PRK07960 330 TEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQFKQLLSSFQRNRDLVSVGA 409
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1255344572 394 YVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQILFPG 439
Cdd:PRK07960 410 YAKGSDPMLDKAIALWPQLEAFLQQGIFERADWEDSLQALERIFPT 455
|
|
| III_secr_ATP |
TIGR02546 |
type III secretion apparatus H+-transporting two-sector ATPase; [Protein fate, Protein and ... |
18-437 |
9.53e-171 |
|
type III secretion apparatus H+-transporting two-sector ATPase; [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274191 [Multi-domain] Cd Length: 422 Bit Score: 485.67 E-value: 9.53e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 18 PLARVAGRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILI 97
Cdd:TIGR02546 1 QPVRVRGRVTEVSGTLLKAVLPGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 98 GESWLGRVVNGLGEPLDGKGRL--NGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSV 175
Cdd:TIGR02546 81 GEALLGRVLDGFGRPLDGKGELpaGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKST 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 176 LLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLL 255
Cdd:TIGR02546 161 LLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 256 VDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSEsAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHI 335
Cdd:TIGR02546 241 MDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGE-KGSITALYTVLVEGDDMNDPIADEVRSILDGHI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 336 VLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERF 415
Cdd:TIGR02546 320 VLSRALAERNHYPAIDVLASLSRVMSQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDDAIDKIDAIRAF 399
|
410 420
....*....|....*....|..
gi 1255344572 416 LRQEMREPASLELVQSRLQILF 437
Cdd:TIGR02546 400 LRQSTDEYSPYEETLEQLHALV 421
|
|
| FliI_clade3 |
TIGR03498 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
24-427 |
3.65e-169 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Pssm-ID: 163293 [Multi-domain] Cd Length: 418 Bit Score: 481.42 E-value: 3.65e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 24 GRLVRLNGILLESVG--CPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGESW 101
Cdd:TIGR03498 1 GRVTAVTGLLIEVRGlsRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 102 LGRVVNGLGEPLDGKGRL-NGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMI 180
Cdd:TIGR03498 81 LGRVINALGEPIDGKGPLpQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSML 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 181 TRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLT 260
Cdd:TIGR03498 161 ARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 261 RYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAG-NSESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTR 339
Cdd:TIGR03498 241 RFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGpGAEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 340 KLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQE 419
Cdd:TIGR03498 321 AIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIRLVPKIYEFLTQG 400
|
....*...
gi 1255344572 420 MREPASLE 427
Cdd:TIGR03498 401 PDEPTSLQ 408
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
24-437 |
2.58e-155 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 446.86 E-value: 2.58e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 24 GRLVRLNGILLESVGCPLMTGQLCRI--ESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGESW 101
Cdd:PRK07721 20 GKVSRVIGLMIESKGPESSIGDVCYIhtKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPGCLVEATGKPLEVKVGSGL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 102 LGRVVNGLGEPLDGKGRLNGndlLPPLP---PSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLG 178
Cdd:PRK07721 100 IGQVLDALGEPLDGSALPKG---LAPVStdqDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMG 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 179 MITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDS 258
Cdd:PRK07721 177 MIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDS 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 259 LTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESaGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLT 338
Cdd:PRK07721 257 VTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNAS-GSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLD 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 339 RKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQ 418
Cdd:PRK07721 336 RQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQIISFLKQ 415
|
410
....*....|....*....
gi 1255344572 419 EMREPASLELVQSRLQILF 437
Cdd:PRK07721 416 GTDEKATFEESIQALLSLF 434
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
95-358 |
1.76e-151 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 430.44 E-value: 1.76e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 95 ILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKS 174
Cdd:cd01136 2 IPVGDGLLGRVIDALGEPLDGKGLPDEPERRPLIAAPPNPLKRAPIEQPLPTGVRAIDGLLTCGEGQRIGIFAGSGVGKS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 175 VLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLL 254
Cdd:cd01136 82 TLLGMIARNTDADVNVIALIGERGREVREFIEKDLGEEGLKRSVLVVATSDESPLLRVRAAYTATAIAEYFRDQGKKVLL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 255 LVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSEsAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGH 334
Cdd:cd01136 162 LMDSLTRFAMAQREVGLAAGEPPTRRGYPPSVFALLPRLLERAGNGE-KGSITAFYTVLVEGDDFNDPIADEVRSILDGH 240
|
250 260
....*....|....*....|....
gi 1255344572 335 IVLTRKLAEAGHYPAIDIGQSISR 358
Cdd:cd01136 241 IVLSRRLAERGHYPAIDVLASISR 264
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
6-436 |
4.27e-151 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 436.33 E-value: 4.27e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 6 AFDNALRSLESIPLARVAGRLVRLNGILLESVGC--PLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAG 83
Cdd:PRK08927 1 MMAALAAAIGDIDTLVIYGRVVAVRGLLVEVAGPihALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 84 ARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPL---PPSVNplTRRSVDEPLDVGVKAINGLLTIGKG 160
Cdd:PRK08927 81 CRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLrapPPPAH--SRARVGEPLDLGVRALNTFLTCCRG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 161 QRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHS 240
Cdd:PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 241 IAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAG-NSESAGSMTAIYTVLAEGDDQ 319
Cdd:PRK08927 239 IAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGpGPIGEGTITGLFTVLVDGDDH 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 320 QDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGAD 399
Cdd:PRK08927 319 NEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRRARQLMATYADMEELIRLGAYRAGSD 398
|
410 420 430
....*....|....*....|....*....|....*...
gi 1255344572 400 ASVDKAVKMFPAIERFLRQEMREPASLELVQSRL-QIL 436
Cdd:PRK08927 399 PEVDEAIRLNPALEAFLRQGKDEATSLAEGYARLaQIL 436
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
1-434 |
7.83e-148 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 428.08 E-value: 7.83e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 1 MSDFSAFDNALRSLESIPLARVAGrlVRLNGILLEsVGCPLM--------TGQLCRIEsanHTLIDAQAVGFNRDITYLM 72
Cdd:PRK06820 3 LPDIARLTPRLQQQLTRPSAPPEG--LRYRGPIVE-IGPTLLraslpgvaQGELCRIE---PQGMLAEVVSIEQEMALLS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 73 PFKQPVGLMAGARVFPEEKAHDILIGESWLGRVVNGLGEPLDGkGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAIN 152
Cdd:PRK06820 77 PFASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDG-GPPLTGQWRELDCPPPSPLTRQPIEQMLTTGIRAID 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 153 GLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRL 232
Cdd:PRK06820 156 GILSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 233 KATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESaGSMTAIYTV 312
Cdd:PRK06820 236 KGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDR-GSITAFYTV 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 313 LAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLG 392
Cdd:PRK06820 315 LVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEIELLVRVG 394
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1255344572 393 GYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQ 434
Cdd:PRK06820 395 EYQAGEDLQADEALQRYPAICAFLQQDHSETAHLETTLEHLA 436
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
1-436 |
9.88e-147 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 425.32 E-value: 9.88e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 1 MSDFSAFDNALRS-LESIPLARVAGRLVRLNGILLESVGCPLMTGQLCRIESANHTL-IDAQAVGFNRDITYLMPFKQPV 78
Cdd:PRK06936 1 MLSLDYIPHHLRHaIVGSRLIQIRGRVTQVTGTILKAVVPGVRIGELCYLRNPDNSLsLQAEVIGFAQHQALLTPLGEMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 79 GLMAGARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIG 158
Cdd:PRK06936 81 GISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 159 KGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELC 238
Cdd:PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 239 HSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESaGSMTAIYTVLAEGDD 318
Cdd:PRK06936 241 TSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDK-GSITALYTVLVEGDD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 319 QQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGA 398
Cdd:PRK06936 320 MTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQ 399
|
410 420 430
....*....|....*....|....*....|....*...
gi 1255344572 399 DASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQIL 436
Cdd:PRK06936 400 DKEADQAIERIGAIRGFLRQGTHELSHFNETLNLLETL 437
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
14-433 |
2.81e-146 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 423.71 E-value: 2.81e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 14 LESIPLARVAGRLVRLNGILLESVGCPLMTGQLCRIESA-NHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKA 92
Cdd:PRK08472 10 LQKFNLSPRFGSITKISPTIIEADGLNPSVGDIVKIESSdNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 93 HDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVG 172
Cdd:PRK08472 90 LNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVG 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 173 KSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADgLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHV 252
Cdd:PRK08472 170 KSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGD-LENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDV 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 253 LLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVLD 332
Cdd:PRK08472 249 LFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILD 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 333 GHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAI 412
Cdd:PRK08472 329 GHIVLSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGNDKELDEAISKKEFM 408
|
410 420
....*....|....*....|.
gi 1255344572 413 ERFLRQEMREPASLELVQSRL 433
Cdd:PRK08472 409 EQFLKQNPNELFPFEQTFEQL 429
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
3-433 |
2.65e-134 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 393.75 E-value: 2.65e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 3 DFSAFDNAL-RSLESIPLARVAGRLVRLNGILLESVGCPLMTGQLCRIESANHTLID-AQAVGFNRDITYLMPFKQPVGL 80
Cdd:PRK09099 4 ELSRLADALeRELAALPAVRRTGKVVEVIGTLLRVSGLDVTLGELCELRQRDGTLLQrAEVVGFSRDVALLSPFGELGGL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 81 MAGARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKG 160
Cdd:PRK09099 84 SRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 161 QRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHS 240
Cdd:PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 241 IAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESaGSMTAIYTVLAEGDDQQ 320
Cdd:PRK09099 244 IAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGET-GSITALYTVLAEDESGS 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 321 DPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADA 400
Cdd:PRK09099 323 DPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDP 402
|
410 420 430
....*....|....*....|....*....|...
gi 1255344572 401 SVDKAVKMFPAIERFLRQEMREPASLELVQSRL 433
Cdd:PRK09099 403 VADEAIAKIDAIRDFLSQRTDEYSDPDATLAAL 435
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
6-427 |
5.40e-122 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 362.39 E-value: 5.40e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 6 AFDNALRSLE--------SIPLARVAG----------------RLVRLngillesvgcplmtGQLCRIESANHTLIdAQA 61
Cdd:PRK06002 2 TPDNALARLAalveryaaPEPLVRIGGtvsevtashyrvrglsRFVRL--------------GDFVAIRADGGTHL-GEV 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 62 VGFNRDITYLMPFKQ--PVGLmaGARVFpEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPL----PPSvnpL 135
Cdd:PRK06002 67 VRVDPDGVTVKPFEPriEIGL--GDAVF-RKGPLRIRPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIdataPPA---M 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 136 TRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGaDGLA 215
Cdd:PRK06002 141 TRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA-DNLK 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 216 KSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVE 295
Cdd:PRK06002 220 KAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 296 SAG-NSESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARA 374
Cdd:PRK06002 300 RAGpGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQRKLVSR 379
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1255344572 375 LKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLE 427
Cdd:PRK06002 380 LKSMIARFEETRDLRLIGGYRAGSDPDLDQAVDLVPRIYEALRQSPGDPPSDD 432
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
21-434 |
6.64e-122 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 361.58 E-value: 6.64e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 21 RVAGRLVRLNGILLESVGCPLMTGQLCRIESANHTlidAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGES 100
Cdd:PRK07594 20 CRWGRIQDVSATLLNAWLPGVFMGELCCIKPGEEL---AEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 101 WLGRVVNGLGEPLDGKGRLNG--NDLLPPLPPsvnPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLG 178
Cdd:PRK07594 97 LLGRVIDGFGRPLDGRELPDVcwKDYDAMPPP---AMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 179 MITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDS 258
Cdd:PRK07594 174 MLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 259 LTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSEsAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLT 338
Cdd:PRK07594 254 LTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGE-KGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLS 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 339 RKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQ 418
Cdd:PRK07594 333 RRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQ 412
|
410
....*....|....*.
gi 1255344572 419 EMREPASLELVQSRLQ 434
Cdd:PRK07594 413 SKDEVCGPELLIEKLH 428
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
28-427 |
5.15e-120 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 356.61 E-value: 5.15e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 28 RLNGILLESVGCPLMTGQLCRIESA---NHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGESWLGR 104
Cdd:PRK08149 12 RIQGPIIEAELPDVAIGEICEIRAGwhsNEVIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALLGA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 105 VVNGLGEPLdgkGRLNGNDLLPPL---------PPSVNplTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSV 175
Cdd:PRK08149 92 VLDPTGKIV---ERFDAPPTVGPIseervidvaPPSYA--ERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 176 LLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLL 255
Cdd:PRK08149 167 LMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLF 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 256 VDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSeSAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHI 335
Cdd:PRK08149 247 IDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGAT-LAGSITAFYTVLLESEEEPDPIGDEIRSILDGHI 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 336 VLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERF 415
Cdd:PRK08149 326 YLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYRRGENADNDRAMDKRPALEAF 405
|
410
....*....|..
gi 1255344572 416 LRQEMREPASLE 427
Cdd:PRK08149 406 LKQDVAEKSSFS 417
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
147-357 |
2.03e-115 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 336.64 E-value: 2.03e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 147 GVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADE 226
Cdd:pfam00006 1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQASADVVVYALIGERGREVREFIEELLGSGALKRTVVVVATSDE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 227 SPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGN-SESAGS 305
Cdd:pfam00006 81 PPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGRvKGKGGS 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1255344572 306 MTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSIS 357
Cdd:pfam00006 161 ITALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS 212
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
94-358 |
1.20e-96 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 291.28 E-value: 1.20e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 94 DILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGK 173
Cdd:cd19476 1 SVPVGPELLGRILDGLGEPLDGLPPIKTKQRRPIHLKAPNPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 174 SVLLGMITRQTK---ADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGH 250
Cdd:cd19476 81 TVLAMQLARNQAkahAGVVVFAGIGERGREVNDLYEEFTKSGAMERTVVVANTANDPPGARMRVPYTGLTIAEYFRDNGQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 251 HVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESA-GSMTAIYTVLAEGDDQQDPIVDCARA 329
Cdd:cd19476 161 HVLLIIDDISRYAEALREMSALLGEPPGREGYPPYLFTKLATLYERAGKVKDGgGSITAIPAVSTPGDDLTDPIPDNTFA 240
|
250 260
....*....|....*....|....*....
gi 1255344572 330 VLDGHIVLTRKLAEAGHYPAIDIGQSISR 358
Cdd:cd19476 241 ILDGQIVLSRELARKGIYPAINVLDSTSR 269
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
44-427 |
4.88e-92 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 285.33 E-value: 4.88e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 44 GQLCRIeSANHTLidAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGND 123
Cdd:PRK06793 43 GDVCFV-GEHNVL--CEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPLQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 124 LLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE 203
Cdd:PRK06793 120 KIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKD 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 204 FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPaTKGYP 283
Cdd:PRK06793 200 FIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELP-IGGKT 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 284 PSAFGMIPKLVESAGNSESaGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQV 363
Cdd:PRK06793 279 LLMESYMKKLLERSGKTQK-GSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEI 357
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1255344572 364 TSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGAD-ASVDKAVKMFPAIERFLRQEMREPASLE 427
Cdd:PRK06793 358 VSPNHWQLANEMRKILSIYKENELYFKLGTIQENAEnAYIFECKNKVEGINTFLKQGRSDSFQFD 422
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
21-436 |
1.31e-87 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 273.70 E-value: 1.31e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 21 RVAGRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGES 100
Cdd:PRK05922 18 RECGLLSRVSGNLLEAQGLSACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDH 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 101 WLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMI 180
Cdd:PRK05922 98 LLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTI 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 181 TRQTKADIVVVGLIGERGREVKEFIDHSlgADGLA--KSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDS 258
Cdd:PRK05922 178 AKGSKSTINVIALIGERGREVREYIEQH--KEGLAaqRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDS 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 259 LTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESaGSMTAIYTVLAEGdDQQDPIVDCARAVLDGHIVLT 338
Cdd:PRK05922 256 LSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDK-GSITALYAILHYP-NHPDIFTDYLKSLLDGHFFLT 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 339 RKlAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQ 418
Cdd:PRK05922 334 PQ-GKALASPPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYVPGQDAHLDRAVKLLPSIKQFLSQ 412
|
410
....*....|....*...
gi 1255344572 419 EMREPASLELVQSRLQIL 436
Cdd:PRK05922 413 PLSSYCALHNTLKQLEAL 430
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
79-427 |
2.42e-45 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 164.32 E-value: 2.42e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 79 GLMAGARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIG 158
Cdd:PRK13343 81 DILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIG 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 159 KGQRVGLMAGSGVGKSVL-LGMITRQTKADIVVV-GLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATE 236
Cdd:PRK13343 161 RGQRELIIGDRQTGKTAIaIDAIINQKDSDVICVyVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPF 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 237 LCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAG--NSE-SAGSMTAIYTVL 313
Cdd:PRK13343 241 AGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAklSPElGGGSLTALPIIE 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 314 AEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYVAYMEIKPLIPLGG 393
Cdd:PRK13343 321 TLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLDYAQFLELEAFTRFGG 400
|
330 340 350
....*....|....*....|....*....|....
gi 1255344572 394 yvaGADASVDKAVKMFPAIERFLRQEMREPASLE 427
Cdd:PRK13343 401 ---LLDAGTQKQITRGRRLRELLKQPRFSPLSVE 431
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
94-358 |
1.03e-44 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 156.95 E-value: 1.03e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 94 DILIGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGK 173
Cdd:cd01132 3 EVPVGEALLGRVVDALGNPIDGKGPIQTKERRRVESKAPGIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQTGK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 174 -SVLLGMITRQTKADIVVVGL-IGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHH 251
Cdd:cd01132 83 tAIAIDTIINQKGKKVYCIYVaIGQKRSTVAQIVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFRDNGKH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 252 VLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAG---NSESAGSMTAIYTVLAEGDDQQDPIVDCAR 328
Cdd:cd01132 163 ALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAklsDELGGGSLTALPIIETQAGDVSAYIPTNVI 242
|
250 260 270
....*....|....*....|....*....|
gi 1255344572 329 AVLDGHIVLTRKLAEAGHYPAIDIGQSISR 358
Cdd:cd01132 243 SITDGQIFLESELFNKGIRPAINVGLSVSR 272
|
|
| atpD |
TIGR01039 |
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are ... |
79-420 |
8.90e-42 |
|
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 211621 [Multi-domain] Cd Length: 461 Bit Score: 154.11 E-value: 8.90e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 79 GLMAGARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLP--PLPPSVNPLTRRSvdEPLDVGVKAINGLLT 156
Cdd:TIGR01039 62 GLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPihRKAPSFEEQSTKV--EILETGIKVIDLLAP 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 157 IGKGQRVGLMAGSGVGKSVLL-GMITRQTKA--DIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESP--LMR 231
Cdd:TIGR01039 140 YAKGGKIGLFGGAGVGKTVLIqELINNIAKEhgGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPgaRMR 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 232 LKATELchSIAAWFRD-RGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAgNSESAGSMTAIY 310
Cdd:TIGR01039 220 VALTGL--TMAEYFRDeQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERI-TSTKTGSITSVQ 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 311 TVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMN-QVTSLEHQQSARALKQNYVAYMEIKPLI 389
Cdd:TIGR01039 297 AVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDpSVVGEEHYDVARGVQQILQRYKELQDII 376
|
330 340 350
....*....|....*....|....*....|....
gi 1255344572 390 PLGGYVAGAD---ASVDKAVKmfpaIERFLRQEM 420
Cdd:TIGR01039 377 AILGMDELSEedkLTVERARR----IQRFLSQPF 406
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
83-358 |
2.27e-37 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 142.41 E-value: 2.27e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 83 GARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGND--LLPPLPPSVnpLTRRSVDEPLDVGVKAINGLLTIGKG 160
Cdd:CHL00059 64 GSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASEsrLIESPAPGI--ISRRSVYEPLQTGLIAIDSMIPIGRG 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 161 QRVGLMAGSGVGK-SVLLGMITRQTKADIVVVGL-IGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELC 238
Cdd:CHL00059 142 QRELIIGDRQTGKtAVATDTILNQKGQNVICVYVaIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTG 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 239 HSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESA---GSMTAIYTVLAE 315
Cdd:CHL00059 222 AALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQlgeGSMTALPIVETQ 301
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1255344572 316 GDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISR 358
Cdd:CHL00059 302 AGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSR 344
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
97-363 |
1.88e-36 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 135.04 E-value: 1.88e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 97 IGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVL 176
Cdd:cd01135 6 VSEDMLGRIFNGSGKPIDGGPPILPEDYLDINGPPINPVARIYPEEMIQTGISAIDVMNTLVRGQKLPIFSGSGLPHNEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 177 LGMITRQTK------ADIVVVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFR-DRG 249
Cdd:cd01135 86 AAQIARQAGvvgseeNFAIVFAAMGVTMEEARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAyEKG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 250 HHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSE-SAGSMTAIYTVLAEGDDQQDPIVDCAR 328
Cdd:cd01135 166 KHVLVILTDMTNYAEALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEgRKGSITQIPILTMPNDDITHPIPDLTG 245
|
250 260 270
....*....|....*....|....*....|....*
gi 1255344572 329 AVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQV 363
Cdd:cd01135 246 YITEGQIYLDRDLHNKGIYPPIDVLPSLSRLMKSG 280
|
|
| F1-ATPase_beta_CD |
cd01133 |
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ... |
97-361 |
7.51e-36 |
|
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410877 [Multi-domain] Cd Length: 277 Bit Score: 133.50 E-value: 7.51e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 97 IGESWLGRVVNGLGEPLDGKGRLNGNDLLP--PLPPSVNPLTrrSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKS 174
Cdd:cd01133 4 VGEETLGRIFNVLGEPIDERGPIKAKERWPihREAPEFVELS--TEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 175 VLL-GMITRQTKAD--IVVVGLIGERGRE----VKEFIDHSL-GADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFR 246
Cdd:cd01133 82 VLImELINNIAKAHggYSVFAGVGERTREgndlYHEMKESGViNLDGLSKVALVYGQMNEPPGARARVALTGLTMAEYFR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 247 D-RGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAgNSESAGSMTAIYTVLAEGDDQQDPIVD 325
Cdd:cd01133 162 DeEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGSLQERI-TSTKKGSITSVQAVYVPADDLTDPAPA 240
|
250 260 270
....*....|....*....|....*....|....*.
gi 1255344572 326 CARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMN 361
Cdd:cd01133 241 TTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRILD 276
|
|
| atpB |
CHL00060 |
ATP synthase CF1 beta subunit |
79-418 |
2.17e-34 |
|
ATP synthase CF1 beta subunit
Pssm-ID: 214349 [Multi-domain] Cd Length: 494 Bit Score: 134.01 E-value: 2.17e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 79 GLMAGARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGNDLLP---PLPPSVNPLTRRSVdepLDVGVKAINGLL 155
Cdd:CHL00060 80 GLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPihrSAPAFIQLDTKLSI---FETGIKVVDLLA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 156 TIGKGQRVGLMAGSGVGKSVL-LGMITRQTKAD--IVVVGLIGERGR-------EVKE--FIDhslgADGLAKSIV--VV 221
Cdd:CHL00060 157 PYRRGGKIGLFGGAGVGKTVLiMELINNIAKAHggVSVFGGVGERTRegndlymEMKEsgVIN----EQNIAESKValVY 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 222 APADESP--LMRLKATELchSIAAWFRD-RGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAg 298
Cdd:CHL00060 233 GQMNEPPgaRMRVGLTAL--TMAEYFRDvNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERI- 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 299 NSESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMN-QVTSLEHQQSARALKQ 377
Cdd:CHL00060 310 TSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQpRIVGEEHYETAQRVKQ 389
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1255344572 378 NYVAYMEIKPLIPlggyVAGADA-------SVDKAVKmfpaIERFLRQ 418
Cdd:CHL00060 390 TLQRYKELQDIIA----ILGLDElseedrlTVARARK----IERFLSQ 429
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
19-427 |
3.39e-32 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 127.25 E-value: 3.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 19 LARVAGRLVRLNGIllESVGcplmTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLM-AGARV-FPEEKAhDIL 96
Cdd:PRK04196 7 VSEIKGPLLFVEGV--EGVA----YGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDlKDTKVrFTGEPL-KLP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 97 IGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVL 176
Cdd:PRK04196 80 VSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 177 LGMITRQTK--------AdiVVVGLIGERGREVKEFID--HSLGAdgLAKSIVVVAPADESPLMRLKATELCHSIA---A 243
Cdd:PRK04196 160 AAQIARQAKvlgeeenfA--VVFAAMGITFEEANFFMEdfEETGA--LERSVVFLNLADDPAIERILTPRMALTAAeylA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 244 WfrDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSE-SAGSMTAIYTVLAEGDDQQDP 322
Cdd:PRK04196 236 F--EKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKgKKGSITQIPILTMPDDDITHP 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 323 IVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQ-----VTSLEHQQSAralKQNYVAYMEIKPLIPLGGYVaG 397
Cdd:PRK04196 314 IPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDgigegKTREDHKDVA---NQLYAAYARGKDLRELAAIV-G 389
|
410 420 430
....*....|....*....|....*....|....
gi 1255344572 398 ADA--SVDKAVKMFP-AIE-RFLRQEMREPASLE 427
Cdd:PRK04196 390 EEAlsERDRKYLKFAdAFErEFVNQGFDENRSIE 423
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
44-386 |
7.17e-30 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 120.52 E-value: 7.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 44 GQLCRIESANHTLIdAQAVGFNRDITYLMPFKQPVGLMAGARVFPEEKAHDILIGESWLGRVVNGLGEPLDGKGRLNGND 123
Cdd:PRK02118 26 GELATVERKDGSSL-AQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPELEGEP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 124 LlPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREVKE 203
Cdd:PRK02118 105 I-EIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARIALQAEADIIILGGMGLTFDDYLF 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 204 FIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFR-DRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGY 282
Cdd:PRK02118 184 FKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFAlEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGY 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 283 PPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLtrklaeagHYPAIDIGQSISRCMNQ 362
Cdd:PRK02118 264 PGSLYSDLASRYEKAVDFEDGGSITIIAVTTMPGDDVTHPVPDNTGYITEGQFYL--------RRGRIDPFGSLSRLKQL 335
|
330 340
....*....|....*....|....*...
gi 1255344572 363 V----TSLEHQQSARALKQNYVAYMEIK 386
Cdd:PRK02118 336 VigkkTREDHGDLMNAMIRLYADSREAK 363
|
|
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
94-358 |
1.15e-29 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 120.56 E-value: 1.15e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 94 DILIGESWLGRVVNGLGEPLDGKGRLNGNDLLP-PLP-PSVnpLTRRSVDEPLDVGVKAINGLLTIGKGQRvGLMAGS-G 170
Cdd:PRK09281 96 EVPVGEALLGRVVNPLGQPIDGKGPIEATETRPvERKaPGV--IDRKSVHEPLQTGIKAIDAMIPIGRGQR-ELIIGDrQ 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 171 VGK-SVLLGMITRQTKADIVVVGL-IGERG----REVKEFIDHslGAdgLAKSIVVVAPADESPLMRLKATELCHSIAAW 244
Cdd:PRK09281 173 TGKtAIAIDTIINQKGKDVICIYVaIGQKAstvaQVVRKLEEH--GA--MEYTIVVAATASDPAPLQYLAPYAGCAMGEY 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 245 FRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAG--NSE-SAGSMTAIytvlaegddqqd 321
Cdd:PRK09281 249 FMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAklSDElGGGSLTAL------------ 316
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1255344572 322 PIVDC-ARAV-----------LDGHIVLTRKLAEAGHYPAIDIGQSISR 358
Cdd:PRK09281 317 PIIETqAGDVsayiptnvisiTDGQIFLESDLFNAGIRPAINVGISVSR 365
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
141-359 |
4.02e-26 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 106.89 E-value: 4.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 141 DEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREV----KEFIDHSLGADG--L 214
Cdd:cd01134 57 NVPLLTGQRVLDTLFPVAKGGTAAIPGPFGCGKTVISQSLSKWSNSDVVIYVGCGERGNEMaevlEEFPELKDPITGesL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 215 AKSIVVVApadESPLMRLKATELC----HSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPP------ 284
Cdd:cd01134 137 MERTVLIA---NTSNMPVAAREASiytgITIAEYFRDMGYNVSLMADSTSRWAEALREISGRLEEMPAEEGYPAylgarl 213
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1255344572 285 SAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRC 359
Cdd:cd01134 214 AEFYERAGRVRCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 288
|
|
| ATP-synt_flagellum-secretory_path_III_N |
cd18117 |
Flagellum-specific ATP synthase, N-terminal domain; The N-terminal domain of the ... |
22-88 |
8.43e-23 |
|
Flagellum-specific ATP synthase, N-terminal domain; The N-terminal domain of the flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The FliI ATPase is the soluble export component that drives flagellar protein export, and it shows extensive similarity to the alpha and beta subunits of F1-ATP synthase. Although they both are proton driven rotary molecular devices, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens, such as Salmonella and Chlamydia, also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 349741 [Multi-domain] Cd Length: 70 Bit Score: 91.44 E-value: 8.43e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1255344572 22 VAGRLVRLNGILLESVGCPLMTGQLCRIESANHTLIDAQAVGFNRDITYLMPFKQPVGLMAGARVFP 88
Cdd:cd18117 1 VYGRVVRVVGLLLEAVGPQAPIGELCLIETADGLSILAEVVGFSGEKVLLMPLGELSGLSPGARVVP 67
|
|
| T3SS_ATPase_C |
pfam18269 |
T3SS EscN ATPase C-terminal domain; This is the C-terminal domain of the EscN protein family ... |
364-427 |
7.07e-22 |
|
T3SS EscN ATPase C-terminal domain; This is the C-terminal domain of the EscN protein family of ATPases that form part of the Type III secretion system (T3SS) present in Escherichia coli. T3SS is a macromolecular complex that creates a syringe-like apparatus extending from the bacterial cytosol across three membranes to the eukaryotic cytosol. This process is essential for pathogenicity. EscN is a functionally unique ATPase that provides an inner-membrane recognition gate for the T3SS chaperone-virulence effector complexes as well as a potential source of energy for their subsequent secretion.The C-terminal domain of T3SS ATPases mediates binding with multiple contact points along the chaperone.
Pssm-ID: 465691 [Multi-domain] Cd Length: 70 Bit Score: 88.64 E-value: 7.07e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1255344572 364 TSLEHQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLE 427
Cdd:pfam18269 1 VSPEHLQAARRLRELLATYQENEDLIRIGAYQAGSDPEIDEAIAKRPAINAFLRQGVDEPVSFE 64
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
80-385 |
4.59e-21 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 95.88 E-value: 4.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 80 LMAGARVFPEEKAHDILIGESWLGRVVNGLGEP------------LDGKGRLNGNDLLPPlppsvNPLTRRSVDEPLDVG 147
Cdd:PTZ00185 102 VQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEvpvglltrsralLESEQTLGKVDAGAP-----NIVSRSPVNYNLLTG 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 148 VKAINGLLTIGKGQRVGLMAGSGVGK-SVLLGMITRQTKAD---------IVVVGLIGERGREVKEF--IDHSLGAdgLA 215
Cdd:PTZ00185 177 FKAVDTMIPIGRGQRELIVGDRQTGKtSIAVSTIINQVRINqqilsknavISIYVSIGQRCSNVARIhrLLRSYGA--LR 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 216 KSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVE 295
Cdd:PTZ00185 255 YTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLE 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 296 SAG---NSESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSA 372
Cdd:PTZ00185 335 RAAmlsPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNVAMKAVA 414
|
330
....*....|...
gi 1255344572 373 RALKQNYVAYMEI 385
Cdd:PTZ00185 415 GKLKGILAEYRKL 427
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
141-365 |
6.92e-21 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 95.23 E-value: 6.92e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 141 DEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKADIVVVGLIGERGREV----KEF---IDHSLGADG 213
Cdd:PRK04192 208 VEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLAKWADADIVIYVGCGERGNEMtevlEEFpelIDPKTGRPL 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 214 LAKSIVVvapADESPlMRLKATELC----HSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPP----- 284
Cdd:PRK04192 288 MERTVLI---ANTSN-MPVAAREASiytgITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAylasr 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 285 -SAFgmipklVESAG----NSESAGSMTAIYTVLAEGDDQQDP-------IVDCARAvldghivLTRKLAEAGHYPAIDI 352
Cdd:PRK04192 364 lAEF------YERAGrvktLGGEEGSVTIIGAVSPPGGDFSEPvtqntlrIVKVFWA-------LDAELADRRHFPAINW 430
|
250
....*....|...
gi 1255344572 353 GQSISRCMNQVTS 365
Cdd:PRK04192 431 LTSYSLYLDQVAP 443
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
157-377 |
1.97e-18 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 84.18 E-value: 1.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 157 IGKGQRVGLMAGSGVGKSVLLGMITRQTKAD----IVVVGLIGERGREVKEFIDhSLGADglaksiVVVAPADESPLMRL 232
Cdd:cd01128 13 IGKGQRGLIVAPPKAGKTTLLQNIANAIAKNhpevELIVLLIDERPEEVTDMRR-SVKGE------VVASTFDEPPERHV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 233 KATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIAlslgePPATK----GYPPSAFGMIPKLVESAGNSESAGSMTA 308
Cdd:cd01128 86 QVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVV-----PSSGKtlsgGVDANALHKPKRFFGAARNIEEGGSLTI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 309 IYTVLAE-GDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQ 377
Cdd:cd01128 161 IATALVDtGSRMDEVIFEEFKGTGNMELVLDRKLAEKRIFPAIDILKSGTRKEELLLTPEELQKIWLLRR 230
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
94-360 |
3.08e-18 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 86.70 E-value: 3.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 94 DIL---IGESWLGRVVNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSG 170
Cdd:TIGR01040 72 DILrtpVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAG 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 171 VGKSVLLGMITRQtkadivvVGLIGERGREVKEfiDHS------LGADG------------------LAKSIVVVAPADE 226
Cdd:TIGR01040 152 LPHNEIAAQICRQ-------AGLVKLPTKDVHD--GHEdnfaivFAAMGvnmetarffkqdfeengsMERVCLFLNLAND 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 227 SPLMRLKATELCHSIAAWFR-DRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSES-AG 304
Cdd:TIGR01040 223 PTIERIITPRLALTTAEYLAyQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGrNG 302
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1255344572 305 SMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCM 360
Cdd:TIGR01040 303 SITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM 358
|
|
| PRK07165 |
PRK07165 |
ATP F0F1 synthase subunit alpha; |
131-382 |
1.70e-17 |
|
ATP F0F1 synthase subunit alpha;
Pssm-ID: 235951 [Multi-domain] Cd Length: 507 Bit Score: 84.64 E-value: 1.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 131 SVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGK-SVLLGMITRQTKADI--VVVGlIGERGREVKeFIDH 207
Cdd:PRK07165 114 AHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKtHIALNTIINQKNTNVkcIYVA-IGQKRENLS-RIYE 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 208 SLG-ADGLAKSIVVVAPADES------PLMRLKATElchSIAAwfrdrGHHVLLLVDSLTRYAMAQREIALSLGEPPATK 280
Cdd:PRK07165 192 TLKeHDALKNTIIIDAPSTSPyeqylaPYVAMAHAE---NISY-----NDDVLIVFDDLTKHANIYREIALLTNKPVGKE 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 281 GYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCM 360
Cdd:PRK07165 264 AFPGDMFFAHSKLLERAGKFKNRKTITALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTG 343
|
250 260
....*....|....*....|..
gi 1255344572 361 NQVTSLEHQQSARALKQNYVAY 382
Cdd:PRK07165 344 SSVQSKTITKVAGEISKIYRAY 365
|
|
| PRK12608 |
PRK12608 |
transcription termination factor Rho; Provisional |
103-358 |
2.02e-15 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237150 [Multi-domain] Cd Length: 380 Bit Score: 77.43 E-value: 2.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 103 GRVVNGLGEPLDGKGRLNGNDLLPPLPP-------------SVNPLTR-RSVDEPLDVGVKAINGLLTIGKGQRVGLMAG 168
Cdd:PRK12608 62 GDVVEGVARPRERYRVLVRVDSVNGTDPeklarrphfddltPLHPRERlRLETGSDDLSMRVVDLVAPIGKGQRGLIVAP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 169 SGVGKSVLLGMITRQTKA---DI-VVVGLIGERGREVKEFiDHSLgadglaKSIVVVAPADESPLMRLKATELCHSIAAW 244
Cdd:PRK12608 142 PRAGKTVLLQQIAAAVAAnhpEVhLMVLLIDERPEEVTDM-RRSV------KGEVYASTFDRPPDEHIRVAELVLERAKR 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 245 FRDRGHHVLLLVDSLTRYAMAQREIALSLGEPpATKGYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAE-GDDQQDPI 323
Cdd:PRK12608 215 LVEQGKDVVILLDSLTRLARAYNNEVESSGRT-LSGGVDARALQRPKRLFGAARNIEEGGSLTIIATALVDtGSRMDEVI 293
|
250 260 270
....*....|....*....|....*....|....*
gi 1255344572 324 VDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISR 358
Cdd:PRK12608 294 FEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTR 328
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
142-377 |
4.54e-15 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 76.65 E-value: 4.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 142 EPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLL----GMITRQTKADIVVVGLIGERGREVKEFIDhslgadgLAKS 217
Cdd:TIGR00767 150 STEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLqkiaQAITRNHPEVELIVLLIDERPEEVTDMQR-------SVKG 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 218 IVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIAlslgePPATK----GYPPSAFGMIPKL 293
Cdd:TIGR00767 223 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVT-----PASGKvlsgGVDANALHRPKRF 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 294 VESAGNSESAGSMTAIYTVLAE-GDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSA 372
Cdd:TIGR00767 298 FGAARNIEEGGSLTIIATALIDtGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTPEELQKI 377
|
....*
gi 1255344572 373 RALKQ 377
Cdd:TIGR00767 378 WVLRK 382
|
|
| ATP-synt_flagellum-secretory_path_III_C |
cd18114 |
Flagellum-specific ATP synthase, C-terminal domain; The C-terminal domain of the ... |
368-438 |
1.56e-13 |
|
Flagellum-specific ATP synthase, C-terminal domain; The C-terminal domain of the flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The flagellum-specific ATPase FliI is the soluble export component that drives flagellar protein export, and it shows extensive similarity to the alpha and beta subunits of FoF1-ATP synthase. Although they both are proton driven rotary molecular devices, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 349749 [Multi-domain] Cd Length: 71 Bit Score: 65.32 E-value: 1.56e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1255344572 368 HQQSARALKQNYVAYMEIKPLIPLGGYVAGADASVDKAVKMFPAIERFLRQEMREPASLELVQSRLQILFP 438
Cdd:cd18114 1 HYLAARKFRELMSTYQENEDLIRIGAYKKGSDPEVDEAIRLKPQIEAFLKQGLNEKAPLEESLQQLEEIFG 71
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
180-369 |
1.56e-13 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 72.75 E-value: 1.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 180 ITRQTKADIVVVGLIGERGREVKEFI-------DHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHV 252
Cdd:PRK14698 676 LAKWSDAQVVIYIGCGERGNEMTDVLeefpklkDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDV 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 253 LLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESA------GNSESAGSMTAIYTVLAEGDDQQDPIVDC 326
Cdd:PRK14698 756 ALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAgrvvtlGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 835
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1255344572 327 ARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQ 369
Cdd:PRK14698 836 TLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHK 878
|
|
| rho |
PRK09376 |
transcription termination factor Rho; Provisional |
106-358 |
2.24e-13 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 236490 [Multi-domain] Cd Length: 416 Bit Score: 71.32 E-value: 2.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 106 VNGLgEPLDGKGRLNGNDLLPpLPPsvnplTRR---SVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGM--- 179
Cdd:PRK09376 119 VNGE-DPEKARNRPLFENLTP-LYP-----NERlrlETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNian 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 180 -ITRQTKADIVVVGLIGERGREVKEfIDHSLGADglaksiVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDS 258
Cdd:PRK09376 192 sITTNHPEVHLIVLLIDERPEEVTD-MQRSVKGE------VVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDS 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1255344572 259 LTRYAmaqReiALSLGEPPATK----GYPPSAFGMIPKLVESAGNSESAGSMTAIYTVLAE-GDDQQDPIVDCARAVLDG 333
Cdd:PRK09376 265 ITRLA---R--AYNTVVPSSGKvlsgGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDtGSRMDEVIFEEFKGTGNM 339
|
250 260
....*....|....*....|....*
gi 1255344572 334 HIVLTRKLAEAGHYPAIDIGQSISR 358
Cdd:PRK09376 340 ELHLDRKLAEKRIFPAIDINRSGTR 364
|
|
| ATP-synt_F1_V1_A1_AB_FliI_C |
cd01429 |
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ... |
368-441 |
9.95e-05 |
|
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, C-terminal domain; The alpha and beta (also called A and B) subunits are primarily found in the F1, V1, and A1 complexes of F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, and A1 complexes contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex that forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.
Pssm-ID: 349744 [Multi-domain] Cd Length: 70 Bit Score: 40.51 E-value: 9.95e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1255344572 368 HQQSARALKQNYVAYMEIKPLIPLGGYVAgADASVDKAVKMFPAIERFLRQEMREPASLElvqSRLQILFPGAK 441
Cdd:cd01429 1 HKAVARGFKAILAQYRELRDIVAIVGDDA-LSEADKKTLSRGRRLEEFLQQGQFEPETIE---DTLEKLYPIKE 70
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
155-187 |
4.43e-04 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 40.32 E-value: 4.43e-04
10 20 30
....*....|....*....|....*....|...
gi 1255344572 155 LTIGKGQRVGLMAGSGVGKSVLLGMITRQTKAD 187
Cdd:pfam00005 6 LTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT 38
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
155-187 |
2.94e-03 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 39.19 E-value: 2.94e-03
10 20 30
....*....|....*....|....*....|...
gi 1255344572 155 LTIGKGQRVGLMAGSGVGKSVLLGMITRQTKAD 187
Cdd:COG1127 26 LDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPD 58
|
|
| |
