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Conserved domains on  [gi|1261176964|ref|WP_097739150|]
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MULTISPECIES: Hok/Gef family protein [Escherichia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HOK_GEF super family cl27487
Hok/gef family;
3-44 3.86e-05

Hok/gef family;


The actual alignment was detected with superfamily member PRK09759:

Pssm-ID: 452751  Cd Length: 50  Bit Score: 36.06  E-value: 3.86e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1261176964  3 KYALIGLLAVCVTVLCFSLIFRERLCELNIHRGNTVVQVTLA 44
Cdd:PRK09759   4 KYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
 
Name Accession Description Interval E-value
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
3-44 3.86e-05

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 36.06  E-value: 3.86e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1261176964  3 KYALIGLLAVCVTVLCFSLIFRERLCELNIHRGNTVVQVTLA 44
Cdd:PRK09759   4 KYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
HOK_GEF pfam01848
Hok/gef family;
5-45 6.14e-04

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 32.73  E-value: 6.14e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1261176964  5 ALIGLLAVCVTVLCFSLIFRERLCELNIHRGNTVVQVTLAY 45
Cdd:pfam01848  1 ALVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Name Accession Description Interval E-value
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
3-44 3.86e-05

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 36.06  E-value: 3.86e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1261176964  3 KYALIGLLAVCVTVLCFSLIFRERLCELNIHRGNTVVQVTLA 44
Cdd:PRK09759   4 KYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
PRK09738 PRK09738
small toxic polypeptide; Provisional
 9-49 1.76e-04

small toxic polypeptide; Provisional


Pssm-ID: 182055  Cd Length: 52  Bit Score: 34.38  E-value: 1.76e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1261176964  9 LLAVCVTVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 49
Cdd:PRK09738  12 VLIVCLTLLIFTYLTRKSLCELRYRDGDREVAAFMAYESGK 52
HOK_GEF pfam01848
Hok/gef family;
5-45 6.14e-04

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 32.73  E-value: 6.14e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1261176964  5 ALIGLLAVCVTVLCFSLIFRERLCELNIHRGNTVVQVTLAY 45
Cdd:pfam01848  1 ALVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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