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Conserved domains on  [gi|1261256933|ref|WP_097786718.1|]
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PH domain-containing protein

Protein Classification

PH domain-containing protein( domain architecture ID 106840)

Pleckstrin homology (PH) domain-containing protein may be involved in targeting a protein to the appropriate cellular location or interacting with a binding partner

CATH:  2.30.29.30
Gene Ontology:  GO:0005515
PubMed:  22728242|17233582|15493994

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
bPH_3 super family cl46307
Bacterial PH domain; Proteins in this family are distantly related to PH domains.
 12-111 3.35e-11

Bacterial PH domain; Proteins in this family are distantly related to PH domains.


The actual alignment was detected with superfamily member pfam14470:

Pssm-ID: 480647  Cd Length: 94  Bit Score: 54.97  E-value: 3.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261256933  12 LSSDEKVLDVLHGSLDVFEyrhpvRPGVLVATNKRLFFYGPDLVGDAWINEYFYENLSKLKEKKNLFGvSSILFWNKNER 91
Cdd:pfam14470   1 LKDDEEILYATSGQINALD-----KPGLIVVTNKRIIFLDKGMFGGMKFIEIPYKKIKSVSFKKGLFG-AKIIIETSGST 74

                          90       100
                  ....*....|....*....|
gi 1261256933  92 VGIRNIQSNNLSDFIQRIQN 111
Cdd:pfam14470  75 ITIDNIDKEDARKFVDAIRE 94
 
Name Accession Description Interval E-value
bPH_3 pfam14470
Bacterial PH domain; Proteins in this family are distantly related to PH domains.
 12-111 3.35e-11

Bacterial PH domain; Proteins in this family are distantly related to PH domains.


Pssm-ID: 464181  Cd Length: 94  Bit Score: 54.97  E-value: 3.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261256933  12 LSSDEKVLDVLHGSLDVFEyrhpvRPGVLVATNKRLFFYGPDLVGDAWINEYFYENLSKLKEKKNLFGvSSILFWNKNER 91
Cdd:pfam14470   1 LKDDEEILYATSGQINALD-----KPGLIVVTNKRIIFLDKGMFGGMKFIEIPYKKIKSVSFKKGLFG-AKIIIETSGST 74

                          90       100
                  ....*....|....*....|
gi 1261256933  92 VGIRNIQSNNLSDFIQRIQN 111
Cdd:pfam14470  75 ITIDNIDKEDARKFVDAIRE 94
 
Name Accession Description Interval E-value
bPH_3 pfam14470
Bacterial PH domain; Proteins in this family are distantly related to PH domains.
 12-111 3.35e-11

Bacterial PH domain; Proteins in this family are distantly related to PH domains.


Pssm-ID: 464181  Cd Length: 94  Bit Score: 54.97  E-value: 3.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261256933  12 LSSDEKVLDVLHGSLDVFEyrhpvRPGVLVATNKRLFFYGPDLVGDAWINEYFYENLSKLKEKKNLFGvSSILFWNKNER 91
Cdd:pfam14470   1 LKDDEEILYATSGQINALD-----KPGLIVVTNKRIIFLDKGMFGGMKFIEIPYKKIKSVSFKKGLFG-AKIIIETSGST 74

                          90       100
                  ....*....|....*....|
gi 1261256933  92 VGIRNIQSNNLSDFIQRIQN 111
Cdd:pfam14470  75 ITIDNIDKEDARKFVDAIRE 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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