|
Name |
Accession |
Description |
Interval |
E-value |
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
5-220 |
3.31e-95 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 280.80 E-value: 3.31e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFID 84
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLPRKEarerIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 161 GLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSII 220
Cdd:COG1131 161 GLDPEARRELWELLREL-AAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELK 219
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
5-214 |
2.89e-90 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 267.16 E-value: 2.89e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELfENVGCFID 84
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL-RRIGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1261268081 165 EGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03268 160 DGIKELRELILSL-RDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
5-217 |
9.30e-77 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 233.45 E-value: 9.30e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKdikEWKEELFENVGCFID 84
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH---PWTRKDLHKIGSLIE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 165 EGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLN 217
Cdd:TIGR03740 158 IGIQELRELIRSF-PEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
5-210 |
5.26e-74 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 224.58 E-value: 5.26e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFID 84
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLayvqkminkpldeidrvlkitgiykakdkkvkDFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:cd03230 81 EPSLYENLTVRENL--------------------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1261268081 165 EGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:cd03230 129 ESRREFWELLRELKK-EGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-219 |
6.39e-68 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 211.64 E-value: 6.39e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFID 84
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVqKMINKPLDE-----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPT 159
Cdd:COG4555 82 ERGLYDRLTVRENIRYF-AELYGLFDEelkkrIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 160 NGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSI 219
Cdd:COG4555 161 NGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-299 |
2.73e-66 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 209.19 E-value: 2.73e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIkewKEELFENVGcfi 83
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPL---DPEDRRRIG--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 dsptY-------YPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKI 152
Cdd:COG4152 75 ----YlpeerglYPKMKVGEQLVYLARLKGLSKAEakrrADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPEL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 153 LILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS-REYIVHVND 231
Cdd:COG4152 151 LILDEPFSGLDPVNVELLKDVIREL-AAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQfGRNTLRLEA 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 232 TTATERILNTEDIPYSIEKEGVFKLMIDQNSVPN-LTRILIKNDiDIFEVSPKKLTLEEVFLSLTKQKE 299
Cdd:COG4152 230 DGDAGWLRALPGVTVVEEDGDGAELKLEDGADAQeLLRALLARG-PVREFEEVRPSLNEIFIEVVGEKA 297
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
5-214 |
2.04e-63 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 198.96 E-value: 2.04e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGsLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFID 84
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYV---QKMINKPLD-EIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:cd03264 80 EFGVYPNFTVREFLDYIawlKGIPSKEVKaRVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 161 GLDPEGVHEIRRLLLHLvkNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03264 160 GLDPEERIRFRNLLSEL--GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
12-295 |
4.15e-57 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 186.06 E-value: 4.15e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 12 KSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFIDSPTYYPN 91
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 92 LTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGV 167
Cdd:TIGR01188 81 LTGRENLEMMGRLYGLPKDEaeerAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 168 HEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG---NLNSIITS---REYIVHVNDTTATERILNT 241
Cdd:TIGR01188 161 RAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGtpeELKRRLGKdtlESRPRDIQSLKVEVSMLIA 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 242 EDIPYSIEKEGVFKLM--------IDQNSVPNLTRILIKNDIDIFEVSPKKLTLEEVFLSLT 295
Cdd:TIGR01188 240 ELGETGLGLLAVTVDSdrikilvpDGDETVPEIVEAAIRNGIRIRSISTERPSLDDVFLKLT 301
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
5-214 |
1.13e-56 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 182.18 E-value: 1.13e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFID 84
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAErrerIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 161 GLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
5-196 |
1.94e-54 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 175.74 E-value: 1.94e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFID 84
Cdd:COG4133 3 LEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLGH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVQKM--INKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGL 162
Cdd:COG4133 83 ADGLKPELTVRENLRFWAALygLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTAL 162
|
170 180 190
....*....|....*....|....*....|....
gi 1261268081 163 DPEGVHEIRRLLLHLVKNeGKTIFISSHNLAEIE 196
Cdd:COG4133 163 DAAGVALLAELIAAHLAR-GGAVLLTTHQPLELA 195
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
5-214 |
5.18e-54 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 175.39 E-value: 5.18e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVG-C 81
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGyC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSpTYYPNLTAYENLAYVQKMINKPLDEIDRV----LKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDE 157
Cdd:cd03263 81 PQFD-ALFDELTVREHLRFYARLKGLPKSEIKEEvellLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 158 PTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03263 160 PTSGLDPASRRAIWDLILEVRKG--RSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
5-214 |
9.96e-54 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 174.48 E-value: 9.96e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVG 80
Cdd:cd03266 2 ITADALTKRFRDVKktvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILD 156
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDEltarLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 157 EPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
5-208 |
6.67e-51 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 167.07 E-value: 6.67e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELF----ENVG 80
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIgylpEERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 cfidsptYYPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILD 156
Cdd:cd03269 81 -------LYPKMKVIDQLVYLAQLKGLKKEEarrrIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 157 EPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:cd03269 154 EPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
8-211 |
6.73e-51 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 166.93 E-value: 6.73e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELfENVGCFIDSPT 87
Cdd:cd03259 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER-RNIGMVFQDYA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 88 YYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLD 163
Cdd:cd03259 83 LFPHLTVAENIAFGLKLRGVPKAEIRArvreLLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALD 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1261268081 164 PEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLL 211
Cdd:cd03259 163 AKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-222 |
6.85e-51 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 167.85 E-value: 6.85e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE------ 74
Cdd:COG1127 2 SEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKelyelr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 -----LFENvGCFIDSptyypnLTAYENLAYVQKMI-NKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISF 144
Cdd:COG1127 82 rrigmLFQG-GALFDS------LTVFENVAFPLREHtDLSEAEIRElvleKLELVGLPGAADKMPSELSGGMRKRVALAR 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 145 AILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:COG1127 155 ALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLAS 232
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
5-208 |
4.25e-50 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 163.90 E-value: 4.25e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI---KEWKEELFENVGC 81
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdlEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYPNLTAYENLAYvqkminkPLdeidrvlkitgiykakdkkvkdfSLGMKQRLGISFAILNDPKILILDEPTNG 161
Cdd:cd03229 81 VFQDFALFPHLTVLENIAL-------GL-----------------------SGGQQQRVALARALAMDPDVLLLDEPTSA 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1261268081 162 LDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:cd03229 131 LDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
5-224 |
9.08e-49 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 162.12 E-value: 9.08e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS-IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVG-C 81
Cdd:COG1122 1 IELENLSFSYPGGTpALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNlRELRRKVGlV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDE 157
Cdd:COG1122 81 FQNPDDQLFAPTVEEDVAFGPENLGLPREEIRErveeALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 158 PTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSRE 224
Cdd:COG1122 161 PTAGLDPRGRRELLELLKRL-NKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYE 226
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
5-228 |
1.00e-47 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 159.59 E-value: 1.00e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE----ELFENVG 80
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEaelyRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYPNLTAYENLAY-VQKMINKPLDEIDRV----LKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILIL 155
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFpLREHTRLSEEEIREIvlekLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 156 DEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREYIVH 228
Cdd:cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVR 233
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
6-208 |
4.34e-47 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 157.24 E-value: 4.34e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 6 QTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGC- 81
Cdd:cd03225 1 ELKNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSlKELRRKVGLv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDE 157
Cdd:cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEErveeALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 158 PTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:cd03225 161 PTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-222 |
7.02e-47 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 157.56 E-value: 7.02e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEElfenVG 80
Cdd:COG1121 3 MMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRR----IG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 C---FIDSPTYYPnLTAYENLA---YVQKMINKPL-----DEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILND 149
Cdd:COG1121 79 YvpqRAEVDWDFP-ITVRDVVLmgrYGRRGLFRRPsradrEAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQD 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGnLLYEGNLNSIITS 222
Cdd:COG1121 158 PDLLLLDEPFAGVDAATEEALYELLREL-RREGKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPEEVLTP 228
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-222 |
7.93e-47 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 157.90 E-value: 7.93e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGCF 82
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSrRELARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSPTYYPNLTAYENLAY----VQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILI 154
Cdd:COG1120 81 PQEPPAPFGLTVRELVALgrypHLGLFGRPSAEdreaVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 155 LDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSH--NLAeiEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:COG1120 161 LDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHdlNLA--ARYADRLVLLKDGRIVAQGPPEEVLTP 228
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
6-208 |
5.30e-45 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 151.92 E-value: 5.30e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 6 QTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI-KEWKEelfenVGC--- 81
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLeKERKR-----IGYvpq 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYPnLTAYENLA---YVQKMINKPL-----DEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:cd03235 76 RRSIDRDFP-ISVRDVVLmglYGHKGLFRRLskadkAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 154 ILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:cd03235 155 LLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
6-214 |
3.50e-44 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 150.96 E-value: 3.50e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 6 QTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEEL---------F 76
Cdd:COG0411 6 EVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRiarlgiartF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 ENVGCFidsptyyPNLTAYENLA----------YVQKMINKP---------LDEIDRVLKITGIYKAKDKKVKDFSLGMK 137
Cdd:COG0411 86 QNPRLF-------PELTVLENVLvaaharlgrgLLAALLRLPrarreereaRERAEELLERVGLADRADEPAGNLSYGQQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 138 QRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:COG0411 159 RRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEG 235
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
6-214 |
8.55e-44 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 147.58 E-value: 8.55e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 6 QTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFenvgcfids 85
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKEL--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 86 ptyypnltAyENLAYV-QkminkpldeidrVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:cd03214 72 --------A-RKIAYVpQ------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1261268081 165 EGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03214 131 AHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
5-208 |
5.34e-43 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 146.63 E-value: 5.34e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW--KEelfENVGCF 82
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLppKD---RDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSPTYYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEP 158
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDErvreVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1261268081 159 TNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
5-214 |
1.17e-42 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 146.43 E-value: 1.17e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEEL--------- 75
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEiarlgigrt 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVGCFidsptyyPNLTAYENL--------------AYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLG 141
Cdd:cd03219 81 FQIPRLF-------PELTVLENVmvaaqartgsglllARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLE 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 142 ISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
4-211 |
1.78e-42 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 149.07 E-value: 1.78e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE------LFE 77
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKdrniamVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 NvgcfidsptY--YPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPK 151
Cdd:COG3839 83 S---------YalYPHMTVYENIAFPLKLRKVPKAEIDRrvreAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPK 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 152 ILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLL 211
Cdd:COG3839 154 VFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQ 213
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
5-210 |
2.05e-42 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 144.96 E-value: 2.05e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVG-CF 82
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPpPEWRRQVAyVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDsPTYYPNlTAYENLAYVQKMINKPLDE--IDRVLKITGI-YKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPT 159
Cdd:COG4619 81 QE-PALWGG-TVRDNLPFPFQLRERKFDRerALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 160 NGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:COG4619 159 SALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
5-210 |
2.29e-42 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 145.33 E-value: 2.29e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE---LF- 76
Cdd:cd03255 1 IELKNLSKTYGGGGekvqALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKelaAFr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 -ENVGcFI-DSPTYYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDP 150
Cdd:cd03255 81 rRHIG-FVfQSFNLLPDLTALENVELPLLLAGVPKKERREraeeLLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 151 KILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLaEIEMIADHIALLHKGNL 210
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAEYADRIIELRDGKI 218
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
5-211 |
4.98e-42 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 144.63 E-value: 4.98e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPL-----DNGTILFNNKDIKEWKE---ELF 76
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDIYDLDVdvlELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 ENVGCFIDSPTYYPnLTAYENLAYVQKM----INKPLDEIDR-VLKITGIY-KAKDK-KVKDFSLGMKQRLGISFAILND 149
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGLRLhgikLKEELDERVEeALRKAALWdEVKDRlHALGLSGGQQQRLCLARALANE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLvkNEGKTIFISSHNLAEIEMIADHIALLHKGNLL 211
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAEL--KKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
8-208 |
5.72e-42 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 142.00 E-value: 5.72e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGCfidsp 86
Cdd:cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPlEELRRRIGY----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 87 tyypnltayenlayvqkminkpldeidrvlkitgiykakdkkVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEG 166
Cdd:cd00267 78 ------------------------------------------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS 115
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1261268081 167 VHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:cd00267 116 RERLLELLRELAE-EGRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
5-222 |
5.91e-41 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 142.44 E-value: 5.91e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSF-DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE-ELFENVGCF 82
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPvELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSPTYYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAK--DKKVKDFSLGMKQRLGISFAILNDPKILILD 156
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIREradeLLALVGLDPAEfaDRYPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 157 EPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-222 |
3.25e-40 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 146.59 E-value: 3.25e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLD---NGTILFNNKDIKEWKEEL 75
Cdd:COG1123 1 MTPLLEVRDLSVRYPGGDvpAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 F-ENVGCFIDSPTYYPN-LTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILND 149
Cdd:COG1123 81 RgRRIGMVFQDPMTQLNpVTVGDQIAEALENLGLSRAEARArvleLLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAA 233
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
5-214 |
3.79e-40 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 146.59 E-value: 3.79e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS-----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE----EL 75
Cdd:COG1123 261 LEVRNLSKRYPVRGkggvrAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRrslrEL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVG--------CFIdsptyyPNLTAYENLAY---VQKMINKP--LDEIDRVLKITGI-YKAKDKKVKDFSLGMKQRLG 141
Cdd:COG1123 341 RRRVQmvfqdpysSLN------PRMTVGDIIAEplrLHGLLSRAerRERVAELLERVGLpPDLADRYPHELSGGQRQRVA 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 142 ISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKT-IFIsSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:COG1123 415 IARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTyLFI-SHDLAVVRYIADRVAVMYDGRIVEDG 487
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-214 |
8.25e-40 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 138.79 E-value: 8.25e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVG 80
Cdd:cd03257 2 LEVKNLSVSFPTGGgsvkALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFI-----DSPTYY-PNLTayenlayVQKMINKPLdeidRVLKITGIYKAKDKKVKD------------------FSLGM 136
Cdd:cd03257 82 KEIqmvfqDPMSSLnPRMT-------IGEQIAEPL----RIHGKLSKKEARKEAVLLllvgvglpeevlnrypheLSGGQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 137 KQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-222 |
1.04e-39 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 141.10 E-value: 1.04e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFI 83
Cdd:PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 DSPTYYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPT 159
Cdd:PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARAlvppLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 160 NGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:PRK13537 167 TGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
5-210 |
1.33e-39 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 138.26 E-value: 1.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDN-QSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE----LFENV 79
Cdd:COG2884 2 IRFENVSKRYPGgREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRReipyLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GC-FIDsptyY---PNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPK 151
Cdd:COG2884 82 GVvFQD----FrllPDRTVYENVALPLRVTGKSRKEIRRrvreVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 152 ILILDEPTNGLDPEGVHEIRRLLLHLVKNeGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEINRR-GTTVLIATHDLELVDRMPKRVLELEDGRL 215
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-210 |
2.03e-39 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 137.87 E-value: 2.03e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE-- 74
Cdd:COG1136 1 MSPLLELRNLTKSYGTGEgevtALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 -LF--ENVGcFIDSpTYY--PNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFA 145
Cdd:COG1136 81 aRLrrRHIG-FVFQ-FFNllPELTALENVALPLLLAGVSRKErrerARELLERVGLGDRLDHRPSQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 146 ILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLaEIEMIADHIALLHKGNL 210
Cdd:COG1136 159 LVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDP-ELAARADRVIRLRDGRI 222
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
4-211 |
4.50e-39 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 140.23 E-value: 4.50e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE--------- 74
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEkrnvgmvfq 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 ---LFenvgcfidsptyyPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAIL 147
Cdd:COG3842 85 dyaLF-------------PHLTVAENVAFGLRMRGVPKAEIRArvaeLLELVGLEGLADRYPHQLSGGQQQRVALARALA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 148 NDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLL 211
Cdd:COG3842 152 PEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIE 215
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-208 |
2.57e-38 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 135.99 E-value: 2.57e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEEL- 75
Cdd:COG1116 4 AAPALELRGVSKRFPTGGggvtALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDRg 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 --FENvgcfidsPTYYPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILND 149
Cdd:COG1116 84 vvFQE-------PALLPWLTVLDNVALGLELRGVPKAErrerARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALAND 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:COG1116 157 PEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
6-205 |
2.75e-38 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 134.31 E-value: 2.75e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 6 QTKNLTKSF-DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWkeELFENVGCFID 84
Cdd:cd03226 1 RIENISFSYkKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAK--ERRKSIGYVMQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYpnL---TAYENLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNG 161
Cdd:cd03226 79 DVDYQ--LftdSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1261268081 162 LDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALL 205
Cdd:cd03226 157 LDYKNMERVGELIREL-AAQGKAVIVITHDYEFLAKVCDRVLLL 199
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
5-214 |
3.13e-38 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 135.15 E-value: 3.13e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS---------------------IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILF 63
Cdd:cd03267 1 IEVSNLSKSYRVYSkepgligslkslfkrkyreveALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 64 NNKDIKEWKEELFENVG-CFIDSPTYYPNLTAYENLAYVQKMINKP-------LDEIDRVLKITGIYkakDKKVKDFSLG 135
Cdd:cd03267 81 AGLVPWKRRKKFLRRIGvVFGQKTQLWWDLPVIDSFYLLAAIYDLPparfkkrLDELSELLDLEELL---DTPVRQLSLG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 136 MKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03267 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
9-222 |
4.68e-37 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 131.90 E-value: 4.68e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 9 NLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKewKEELFE----NVGCFID 84
Cdd:cd03218 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT--KLPMHKrarlGIGYLPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVQKMINKP----LDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:cd03218 83 EASIFRKLTVEENILAVLEIRGLSkkerEEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 161 GLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:cd03218 163 GVDPIAVQDIQKIIKIL-KDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
5-207 |
4.97e-37 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 131.44 E-value: 4.97e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEEL---FE 77
Cdd:cd03293 1 LEVRNVSKTYGGGGgavtALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRgyvFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 NvgcfidsPTYYPNLTAYENLAYVQKMINKP----LDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:cd03293 81 Q-------DALLPWLTVLDNVALGLELQGVPkaeaRERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 154 ILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHK 207
Cdd:cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
5-230 |
5.45e-37 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 133.05 E-value: 5.45e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSF-DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE---ELFENVG 80
Cdd:PRK13636 6 LKVEELNYNYsDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKglmKLRESVG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYP-NLTAYENLAYVQKMINKPLDEI----DRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILIL 155
Cdd:PRK13636 86 MVFQDPDNQLfSASVYQDVSFGAVNLKLPEDEVrkrvDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 156 DEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREYIVHVN 230
Cdd:PRK13636 166 DEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVN 240
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
3-220 |
1.45e-36 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 133.42 E-value: 1.45e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCF 82
Cdd:PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSPTYYPNLTAYENLAYVQKMINKPLDEIDRV----LKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEP 158
Cdd:PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVipslLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 159 TNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSII 220
Cdd:PRK13536 200 TTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
9-219 |
2.12e-36 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 130.62 E-value: 2.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 9 NLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGcfI----D 84
Cdd:COG4674 15 DLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLG--IgrkfQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENL------------AYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKI 152
Cdd:COG4674 93 KPTVFEELTVFENLelalkgdrgvfaSLFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 153 LILDEPTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSI 219
Cdd:COG4674 173 LLLDEPVAGMTDAETERTAELLKSLAGK--HSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEV 237
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
5-210 |
2.50e-36 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 130.05 E-value: 2.50e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI------KEWKEELFEN 78
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDItnlpphKRPVNTVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFidsptyyPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILI 154
Cdd:cd03300 81 YALF-------PHLTVFENIAFGLRLKKLPKAEIKErvaeALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 155 LDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
5-220 |
2.61e-36 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 130.01 E-value: 2.61e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE-EL---- 75
Cdd:cd03258 2 IELKNVSKVFGDTGgkvtALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGkELrkar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 ------FENVGCFidsptyyPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFA 145
Cdd:cd03258 82 rrigmiFQHFNLL-------SSRTVFENVALPLEIAGVPKAEIEErvleLLELVGLEDKADAYPAQLSGGQKQRVGIARA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 146 ILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSII 220
Cdd:cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
5-224 |
5.18e-36 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 129.32 E-value: 5.18e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW--KEELFENVGCF 82
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLpmHERARLGIGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSPTYYPNLTAYENL-AYVQKMINKPLDEI----DRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDE 157
Cdd:TIGR04406 82 PQEASIFRKLTVEENImAVLEIRKDLDRAEReerlEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 158 PTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSRE 224
Cdd:TIGR04406 162 PFAGVDPIAVGDIKKIIKHL-KERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEK 227
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
5-208 |
7.36e-36 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 128.03 E-value: 7.36e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFE---NVGC 81
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINElrqKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYPNLTAYENLA----YVQKM-----INKPLDEIDRVlkitGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKI 152
Cdd:cd03262 81 VFQQFNLFPHLTVLENITlapiKVKGMskaeaEERALELLEKV----GLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 153 LILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
5-208 |
1.04e-35 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 126.34 E-value: 1.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW-KEELFENVGc 81
Cdd:cd03228 1 IEFKNVSFSYPGRPkpVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLdLESLRKNIA- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYPNLTAYENLayvqkminkpldeidrvlkitgiykakdkkvkdFSLGMKQRLGISFAILNDPKILILDEPTNG 161
Cdd:cd03228 80 YVPQDPFLFSGTIRENI---------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1261268081 162 LDPEGVHEIRRLLLHLVKneGKTIFISSHNLAEIEMiADHIALLHKG 208
Cdd:cd03228 127 LDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDDG 170
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-290 |
1.25e-35 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 130.59 E-value: 1.25e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQ--------SI-------------VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIL 62
Cdd:COG4586 1 IIEVENLSKTYRVYekepglkgALkglfrreyreveaVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 63 FNNKDIKEWKEELFENVG-CFIDSPTYYPNLTAYENLAYVQKM-------INKPLDEIDRVLKITGIYkakDKKVKDFSL 134
Cdd:COG4586 81 VLGYVPFKRRKEFARRIGvVFGQRSQLWWDLPAIDSFRLLKAIyripdaeYKKRLDELVELLDLGELL---DTPVRQLSL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 135 GMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:COG4586 158 GQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 215 NLNSIITS----REYIVHVNDTTATERILNTEDIpysIEKEG-VFKLMID-QNSVPNLTRILIKN----DIDIFEVSpkk 284
Cdd:COG4586 238 SLEELKERfgpyKTIVLELAEPVPPLELPRGGEV---IEREGnRVRLEVDpRESLAEVLARLLARypvrDLTIEEPP--- 311
|
....*.
gi 1261268081 285 ltLEEV 290
Cdd:COG4586 312 --IEEV 315
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
20-160 |
1.48e-35 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 125.45 E-value: 1.48e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFE-NVGCFIDSPTYYPNLTAYENL 98
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRkEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 99 AYVQKMI----NKPLDEIDRVLKITGIYKAKDKKVKD----FSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:pfam00005 81 RLGLLLKglskREKDARAEEALEKLGLGDLADRPVGErpgtLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
4-215 |
1.63e-35 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 135.35 E-value: 1.63e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW-KEELFENVG 80
Cdd:COG2274 473 DIELENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIdPASLRRQIG 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 C-------FidsptyypNLTAYENLAYVQKMInkPLDEIDRVLKITGI----------YkakDKKVKD----FSLGMKQR 139
Cdd:COG2274 553 VvlqdvflF--------SGTIRENITLGDPDA--TDEEIIEAARLAGLhdfiealpmgY---DTVVGEggsnLSGGQRQR 619
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 140 LGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKneGKTIFISSHNLAEIEMiADHIALLHKGNLLYEGN 215
Cdd:COG2274 620 LAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIRL-ADRIIVLDKGRIVEDGT 692
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
8-214 |
1.02e-34 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 133.60 E-value: 1.02e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFD--NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFIDS 85
Cdd:TIGR01257 932 KNLVKIFEpsGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQH 1011
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 86 PTYYPNLTAYENLAYVQKMINKPLD----EIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNG 161
Cdd:TIGR01257 1012 NILFHHLTVAEHILFYAQLKGRSWEeaqlEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 162 LDPEGVHEIRRLLLHLvkNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:TIGR01257 1092 VDPYSRRSIWDLLLKY--RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
5-215 |
3.37e-34 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 124.37 E-value: 3.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWkeelfenvgcfid 84
Cdd:COG1137 4 LEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHL------------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 sPTY--------Y-P-------NLTAYENLAYVQKMINKPLDEIDRVL-------KITGIykakdKKVKDFSL--GMKQR 139
Cdd:COG1137 71 -PMHkrarlgigYlPqeasifrKLTVEDNILAVLELRKLSKKEREERLeelleefGITHL-----RKSKAYSLsgGERRR 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 140 LGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGN 215
Cdd:COG1137 145 VEIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHL-KERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGT 219
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
22-214 |
3.63e-34 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 125.64 E-value: 3.63e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI----KEWKEELFENVG-CFidsptYYPN----- 91
Cdd:TIGR04521 23 DVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDItakkKKKLKDLRKKVGlVF-----QFPEhqlfe 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 92 LTAYENLAYVQKMINKPLDEIDR----VLKITGIykakDKKVKD---FSL--GMKQRLGISFAILNDPKILILDEPTNGL 162
Cdd:TIGR04521 98 ETVYKDIAFGPKNLGLSEEEAEErvkeALELVGL----DEEYLErspFELsgGQMRRVAIAGVLAMEPEVLILDEPTAGL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 163 DPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:TIGR04521 174 DPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDG 225
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
5-214 |
4.85e-34 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 123.70 E-value: 4.85e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK------------ 72
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPpheraragigyv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 73 ---EELFenvgcfidsptyyPNLTAYENL---AYVQKmINKPLDEIDRVLKITGIYKAK-DKKVKDFSLGMKQRLGISFA 145
Cdd:cd03224 81 pegRRIF-------------PELTVEENLllgAYARR-RAKRKARLERVYELFPRLKERrKQLAGTLSGGEQQMLAIARA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 146 ILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEG 214
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
3-215 |
2.41e-33 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 128.34 E-value: 2.41e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDN-QSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE-LFENVG 80
Cdd:COG4988 335 PSIELEDVSFSYPGgRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPAsWRRQIA 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 cFIDSPTYYPNLTAYENLAyvqkmINKP---LDEIDRVLKITGIYkakdkkvkDF-------------------SLGMKQ 138
Cdd:COG4988 415 -WVPQNPYLFAGTIRENLR-----LGRPdasDEELEAALEAAGLD--------EFvaalpdgldtplgeggrglSGGQAQ 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 139 RLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKneGKTIFISSHNLAEIEmIADHIALLHKGNLLYEGN 215
Cdd:COG4988 481 RLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLA-QADRILVLDDGRIVEQGT 554
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
5-277 |
3.56e-33 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 124.42 E-value: 3.56e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE-EL---- 75
Cdd:COG1135 2 IELENLSKTFPTKGgpvtALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSErELraar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 ------FENvgcFidsptyypNL----TAYENLAYVQKMINKPLDEID-RV---LKITGIYKAKDKKVKDFSLGMKQRLG 141
Cdd:COG1135 82 rkigmiFQH---F--------NLlssrTVAENVALPLEIAGVPKAEIRkRVaelLELVGLSDKADAYPSQLSGGQKQRVG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 142 ISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSII- 220
Cdd:COG1135 151 IARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFa 230
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 221 -----TSREYIVHVNDTTATERILntEDIPYSIEKEGVFKLMIDQNSV--PNLTRILIKNDIDI 277
Cdd:COG1135 231 npqseLTRRFLPTVLNDELPEELL--ARLREAAGGGRLVRLTFVGESAdePLLSELARRFGVDV 292
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
5-220 |
4.83e-33 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 121.29 E-value: 4.83e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSiVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELfENVGCFID 84
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK-RDISYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVQKMINKPLDEIDR-VLKIT---GIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERkVLEIAemlGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 161 GLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSII 220
Cdd:cd03299 159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-214 |
5.31e-33 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 121.70 E-value: 5.31e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQS-IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EEL------ 75
Cdd:COG3638 2 MLELRNLSKRYPGGTpALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRgRALrrlrrr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 -------FENVgcfidsptyyPNLTAYEN-----LAYV-----------QKMINKPLDEIDRVlkitGIYKAKDKKVKDF 132
Cdd:COG3638 82 igmifqqFNLV----------PRLSVLTNvlagrLGRTstwrsllglfpPEDRERALEALERV----GLADKAYQRADQL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 133 SLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLY 212
Cdd:COG3638 148 SGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVF 227
|
..
gi 1261268081 213 EG 214
Cdd:COG3638 228 DG 229
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
13-208 |
1.02e-32 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 126.43 E-value: 1.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 13 SF---DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVG-------C 81
Cdd:COG1132 346 SFsypGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTlESLRRQIGvvpqdtfL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FidsptyypNLTAYENLAYVQKmiNKPLDEIDRVLKITGIYkakdkkvkDF-------------------SLGMKQRLGI 142
Cdd:COG1132 426 F--------SGTIRENIRYGRP--DATDEEVEEAAKAAQAH--------EFiealpdgydtvvgergvnlSGGQRQRIAI 487
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 143 SFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKneGKTIFISSHNLAEIEMiADHIALLHKG 208
Cdd:COG1132 488 ARALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLSTIRN-ADRILVLDDG 550
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-208 |
1.03e-32 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 125.91 E-value: 1.03e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFD----NQSIvrdlNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKewkeelf 76
Cdd:COG3845 2 MPPALELRGITKRFGgvvaNDDV----SLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVR------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 envgcfIDSP---------------TYYPNLTAYENLAY----VQKMINKPLDEIDRVLKITGIYKAK---DKKVKDFSL 134
Cdd:COG3845 71 ------IRSPrdaialgigmvhqhfMLVPNLTVAENIVLglepTKGGRLDRKAARARIRELSERYGLDvdpDAKVEDLSV 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 135 GMKQRLGISFAILNDPKILILDEPTNGLDPEgvhEIRRLL--LHLVKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:COG3845 145 GEQQRVEILKALYRGARILILDEPTAVLTPQ---EADELFeiLRRLAAEGKSIIFITHKLREVMAIADRVTVLRRG 217
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
20-222 |
1.84e-32 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 120.83 E-value: 1.84e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW-KEEL-----------FENVGCFidspt 87
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMsRKELrelrrkkismvFQSFALL----- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 88 yyPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLD 163
Cdd:cd03294 115 --PHRTVLENVAFGLEVQGVPRAEREEraaeALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 164 PegvhEIRR----LLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:cd03294 193 P----LIRRemqdELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-208 |
1.85e-32 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 117.53 E-value: 1.85e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKewkeelfenvgcfid 84
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 sptyypnltayenlayvqkmINKPLDEIDrvLKITGIYKakdkkvkdFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:cd03216 66 --------------------FASPRDARR--AGIAMVYQ--------LSVGERQMVEIARALARNARLLILDEPTAALTP 115
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1261268081 165 egvHEIRRLL--LHLVKNEGKT-IFIsSHNLAEIEMIADHIALLHKG 208
Cdd:cd03216 116 ---AEVERLFkvIRRLRAQGVAvIFI-SHRLDEVFEIADRVTVLRDG 158
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
8-214 |
1.30e-31 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 117.78 E-value: 1.30e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELF--------EN 78
Cdd:COG0410 7 ENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPpHRIArlgigyvpEG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFidsptyyPNLTAYENL---AYVQKMINKPLDEIDRV------LKitgiyKAKDKKVKDFSLGMKQRLGISFAILND 149
Cdd:COG0410 87 RRIF-------PSLTVEENLllgAYARRDRAEVRADLERVyelfprLK-----ERRRQRAGTLSGGEQQMLAIGRALMSR 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:COG0410 155 PKLLLLDEPSLGLAPLIVEEIFEIIRRL-NREGVTILLVEQNARFALEIADRAYVLERGRIVLEG 218
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
5-214 |
2.67e-31 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 116.90 E-value: 2.67e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQ-SIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE----LFENV 79
Cdd:cd03256 1 IEVENLSKTYPNGkKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKalrqLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GCFIDSPTYYPNLTAYEN-----LAYVQ--KMINKPLDEIDRV-----LKITGIYKAKDKKVKDFSLGMKQRLGISFAIL 147
Cdd:cd03256 81 GMIFQQFNLIERLSVLENvlsgrLGRRStwRSLFGLFPKEEKQralaaLERVGLLDKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 148 NDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
3-210 |
8.06e-31 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 115.51 E-value: 8.06e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI--KEWKEelfENVG 80
Cdd:cd03296 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAtdVPVQE---RNVG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYPNLTAYENLAY---VQKMINKP-LDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKI 152
Cdd:cd03296 78 FVFQHYALFRHMTVFDNVAFglrVKPRSERPpEAEIRAkvheLLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 153 LILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
19-214 |
8.81e-31 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 115.06 E-value: 8.81e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 19 IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLD---NGTILFNNKDIKewKEELFENVGCFIDSPTYYPNLTAY 95
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGgttSGQILFNGQPRK--PDQFQKCVAYVRQDDILLPGLTVR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 96 ENLAYVQKM---------INKPLDEiDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEG 166
Cdd:cd03234 100 ETLTYTAILrlprkssdaIRKKRVE-DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1261268081 167 VHEIRRLLLHLVKnEGKTIFISSHN-LAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03234 179 ALNLVSTLSQLAR-RNRIVILTIHQpRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-214 |
1.28e-30 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 115.09 E-value: 1.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEEL--------- 75
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDInklrrkvgm 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 -FENVGCFidsptyyPNLTAYENLAY----VQKM-----INKPLDEIDRVlkitGIYKAKDKKVKDFSLGMKQRLGISFA 145
Cdd:COG1126 82 vFQQFNLF-------PHLTVLENVTLapikVKKMskaeaEERAMELLERV----GLADKADAYPAQLSGGQQQRVAIARA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 146 ILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHnlaeiEM-----IADHIALLHKGNLLYEG 214
Cdd:COG1126 151 LAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAK-EGMTMVVVTH-----EMgfareVADRVVFMDGGRIVEEG 218
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-211 |
2.15e-30 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 120.61 E-value: 2.15e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTI-LF----NNKDIkewkeELFEN 78
Cdd:NF033858 266 AIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAwLFgqpvDAGDI-----ATRRR 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFIDSPTYYPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILI 154
Cdd:NF033858 341 VGYMSQAFSLYGELTVRQNLELHARLFHLPAAEiaarVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLI 420
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 155 LDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSH--NLAEiemIADHIALLHKGNLL 211
Cdd:NF033858 421 LDEPTSGVDPVARDMFWRLLIELSREDGVTIFISTHfmNEAE---RCDRISLMHAGRVL 476
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
5-214 |
8.21e-30 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 113.68 E-value: 8.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEwKEELFE---NV 79
Cdd:TIGR04520 1 IEVENVSFSYPESEkpALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLD-EENLWEirkKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GC--------FIDSptyypnlTAYENLAYVQKMINKPLDEI----DRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAIL 147
Cdd:TIGR04520 80 GMvfqnpdnqFVGA-------TVEDDVAFGLENLGVPREEMrkrvDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 148 NDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMiADHIALLHKGNLLYEG 214
Cdd:TIGR04520 153 MRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKGKIVAEG 218
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
8-224 |
1.33e-29 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 112.68 E-value: 1.33e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIK--EWKEELFENVGCFIDS 85
Cdd:PRK10895 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARARRGIGYLPQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 86 PTYYPNLTAYENLAYVQKmINKPL------DEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPT 159
Cdd:PRK10895 87 ASIFRRLSVYDNLMAVLQ-IRDDLsaeqreDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 160 NGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSRE 224
Cdd:PRK10895 166 AGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH 229
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-214 |
2.45e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 112.24 E-value: 2.45e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLD-----NGTILFNNKDIKEWKEEL 75
Cdd:PRK14267 1 MKFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIYSPDVDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FE---NVGCFIDSPTYYPNLTAYENLAYVQKMIN--KPLDEIDRV----LKITGIYKAKDKKVKDF----SLGMKQRLGI 142
Cdd:PRK14267 81 IEvrrEVGMVFQYPNPFPHLTIYDNVAIGVKLNGlvKSKKELDERvewaLKKAALWDEVKDRLNDYpsnlSGGQRQRLVI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 143 SFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKNEgKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
5-209 |
3.59e-29 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 114.27 E-value: 3.59e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE------LFEN 78
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEnrhvntVFQS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFidsptyyPNLTAYENLAYVQKMINKPLDEID-RV---LKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILI 154
Cdd:PRK09452 95 YALF-------PHMTVFENVAFGLRMQKTPAAEITpRVmeaLRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 155 LDEPTNGLDpegvHEIRRL----LLHLVKNEGKT-IFIsSHNLAEIEMIADHIALLHKGN 209
Cdd:PRK09452 168 LDESLSALD----YKLRKQmqneLKALQRKLGITfVFV-THDQEEALTMSDRIVVMRDGR 222
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-220 |
4.83e-29 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 110.94 E-value: 4.83e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQS----------------------IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDN 58
Cdd:COG1134 1 MSSMIEVENVSKSYRLYHepsrslkelllrrrrtrreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 59 GTIlfnnkdikEWKEE---LFE-NVGcfidsptYYPNLTAYENLAYVQKMINKPLDEIDRVLK-I---TGIYKAKDKKVK 130
Cdd:COG1134 81 GRV--------EVNGRvsaLLElGAG-------FHPELTGRENIYLNGRLLGLSRKEIDEKFDeIvefAELGDFIDQPVK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 131 DFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:COG1134 146 TYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRE-SGRTVIFVSHSMGAVRRLCDRAIWLEKGRL 224
|
250
....*....|
gi 1261268081 211 LYEGNLNSII 220
Cdd:COG1134 225 VMDGDPEEVI 234
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
5-215 |
5.87e-29 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 110.39 E-value: 5.87e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIV-RDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE-ELFENVGCF 82
Cdd:cd03254 3 IEFENVNFSYDEKKPVlKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRkSLRSMIGVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSPTYYPNlTAYENLAYVQKMINKplDEIDRVLKITGI-----------YKAKDKKVKDFSLGMKQRLGISFAILNDPK 151
Cdd:cd03254 83 LQDTFLFSG-TIMENIRLGRPNATD--EEVIEAAKEAGAhdfimklpngyDTVLGENGGNLSQGERQLLAIARAMLRDPK 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 152 ILILDEPTNGLDPEGVHEIRRLLLHLvkNEGKTIFISSHNLAEIEMiADHIALLHKGNLLYEGN 215
Cdd:cd03254 160 ILILDEATSNIDTETEKLIQEALEKL--MKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGT 220
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
19-214 |
9.28e-29 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 109.93 E-value: 9.28e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 19 IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIkeWkeeLFEnVGCFIDsptyyPNLTAYENL 98
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS--S---LLG-LGGGFN-----PELTGRENI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 99 AYVQKMINKPLDEI----DRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLL 174
Cdd:cd03220 106 YLNGRLLGLSRKEIdekiDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL 185
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1261268081 175 LHLVKNeGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03220 186 RELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
5-214 |
1.43e-28 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 109.70 E-value: 1.43e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQ-SIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI-KEWKEELFE---NV 79
Cdd:TIGR02315 2 LEVENLSKVYPNGkQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDItKLRGKKLRKlrrRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GCFIDSPTYYPNLTAYEN-----LAY---VQKMIN--------KPLDEIDRVlkitGIYKAKDKKVKDFSLGMKQRLGIS 143
Cdd:TIGR02315 82 GMIFQHYNLIERLTVLENvlhgrLGYkptWRSLLGrfseedkeRALSALERV----GLADKAYQRADQLSGGQQQRVAIA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 144 FAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-226 |
2.12e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 109.74 E-value: 2.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDN-----GTILFNNKDIKEWK---EEL 75
Cdd:PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYERRvnlNRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVGCFIDSPTYYPnLTAYENLAYVQKMIN-KPLDEIDRVlkITGIYKAKD----------KKVKDFSLGMKQRLGISF 144
Cdd:PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGwRPKLEIDDI--VESALKDADlwdeikhkihKSALDLSGGQQQRLCIAR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 145 AILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHK-----GNLLYEGNLNSI 219
Cdd:PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTKKI 243
|
250
....*....|...
gi 1261268081 220 ITS------REYI 226
Cdd:PRK14258 244 FNSphdsrtREYV 256
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-222 |
2.35e-28 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 109.40 E-value: 2.35e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLI-PLDNGTI-LFNNK----DIKEWKEelfe 77
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLpPTYGNDVrLFGERrggeDVWELRK---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 NVGCFidSP----TYYPNLTA--------------YENLAYVQKminkplDEIDRVLKITGIYKAKDKKVKDFSLGMKQR 139
Cdd:COG1119 79 RIGLV--SPalqlRFPRDETVldvvlsgffdsiglYREPTDEQR------ERARELLELLGLAHLADRPFGTLSQGEQRR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 140 LGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEI-EMIaDHIALLHKGNLLYEGNLNS 218
Cdd:COG1119 151 VLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIpPGI-THVLLLKDGRVVAAGPKEE 229
|
....
gi 1261268081 219 IITS 222
Cdd:COG1119 230 VLTS 233
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
3-208 |
3.49e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 113.71 E-value: 3.49e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE-LFENV 79
Cdd:COG4987 332 PSLELEDVSFRYPGAGrpVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDdLRRRI 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GcFIDSPTYYPNLTAYENLayvqkMINKP---LDEIDRVLKITGIykakDKKVKD---------------FSLGMKQRLG 141
Cdd:COG4987 412 A-VVPQRPHLFDTTLRENL-----RLARPdatDEELWAALERVGL----GDWLAAlpdgldtwlgeggrrLSGGERRRLA 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 142 ISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKneGKTIFISSHNLAEIEMiADHIALLHKG 208
Cdd:COG4987 482 LARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGLER-MDRILVLEDG 545
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
5-191 |
3.81e-28 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 107.88 E-value: 3.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSI-VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE----LFENV 79
Cdd:cd03292 1 IEFINVTKTYPNGTAaLDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRaipyLRRKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GCFIDSPTYYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILIL 155
Cdd:cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKrvpaALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190
....*....|....*....|....*....|....*.
gi 1261268081 156 DEPTNGLDPEGVHEIRRlLLHLVKNEGKTIFISSHN 191
Cdd:cd03292 161 DEPTGNLDPDTTWEIMN-LLKKINKAGTTVVVATHA 195
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
5-222 |
3.85e-28 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 109.02 E-value: 3.85e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGCFI 83
Cdd:COG4604 2 IEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPsRELAKRLAILR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 DSPTYYPNLTAYENLA-----YVQKMINKpLDE--IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILD 156
Cdd:COG4604 82 QENHINSRLTVRELVAfgrfpYSKGRLTA-EDReiIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 157 EPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSH--NLAEIemIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:COG4604 161 EPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHdiNFASC--YADHIVAMKDGRVVAQGTPEEIITP 226
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-221 |
6.81e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 108.46 E-value: 6.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLD-----NGTILFNNKDI-KEWKEELFEN 78
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYpearvSGEVYLDGQDIfKMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFIDSPTYYPNLTAYENLAY---VQKMINKPLDEIDRVLKitGIYKAKD-KKVKD--------FSLGMKQRLGISFAI 146
Cdd:PRK14247 84 VQMVFQIPNPIPNLSIFENVALglkLNRLVKSKKELQERVRW--ALEKAQLwDEVKDrldapagkLSGGQQQRLCIARAL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 147 LNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIIT 221
Cdd:PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
5-223 |
7.06e-28 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 108.18 E-value: 7.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGCFI 83
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSsRQLARRLALLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 DSPTYYPNLTAYENLAYVQ--------KMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILIL 155
Cdd:PRK11231 83 QHHLTPEGITVRELVAYGRspwlslwgRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 156 DEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSR 223
Cdd:PRK11231 163 DEPTTYLDINHQVELMRLMREL-NTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
15-193 |
9.27e-28 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 106.35 E-value: 9.27e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 15 DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFE---NVGCFIDSPT---Y 88
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLErrqRVGLVFQDPDdqlF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 89 YPnlTAYENLAYVQKMINKPLDEIDRV----LKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:TIGR01166 83 AA--DVDQDVAFGPLNLGLSEAEVERRvreaLTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160
|
170 180
....*....|....*....|....*....
gi 1261268081 165 EGVHEIRRlLLHLVKNEGKTIFISSHNLA 193
Cdd:TIGR01166 161 AGREQMLA-ILRRLRAEGMTVVISTHDVD 188
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
5-229 |
1.63e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 107.97 E-value: 1.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFD-NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI-KEWKEELFENVGCF 82
Cdd:PRK13652 4 IETRDLCYSYSgSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPItKENIREVRKFVGLV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSP---TYYPnlTAYENLAYvqKMINKPLDE------IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:PRK13652 84 FQNPddqIFSP--TVEQDIAF--GPINLGLDEetvahrVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 154 ILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREYIVHV 229
Cdd:PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARV 235
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
15-215 |
4.47e-27 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 105.78 E-value: 4.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 15 DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTtmrmLLGLIP----LDNGTILFNNKDIKEWK-EELFENVGcFIDSPTYY 89
Cdd:cd03251 13 DGPPVLRDISLDIPAGETVALVGPSGSGKST----LVNLIPrfydVDSGRILIDGHDVRDYTlASLRRQIG-LVSQDVFL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 90 PNLTAYENLAYVQKmiNKPLDEIDRVLK-------ITGIYKAKDKKVKD----FSLGMKQRLGISFAILNDPKILILDEP 158
Cdd:cd03251 88 FNDTVAENIAYGRP--GATREEVEEAARaanahefIMELPEGYDTVIGErgvkLSGGQRQRIAIARALLKDPPILILDEA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 159 TNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIEMiADHIALLHKGNLLYEGN 215
Cdd:cd03251 166 TSALDTESERLVQAALERLMKN--RTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGT 219
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-224 |
2.11e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 104.82 E-value: 2.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSF-DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI-KEWKEELFEN 78
Cdd:PRK13647 1 MDNIIEVEDLHFRYkDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVnAENEKWVRSK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VG-CFIDSPTYYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:PRK13647 81 VGlVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERrveeALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 154 ILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNlNSIITSRE 224
Cdd:PRK13647 161 VLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD-KSLLTDED 229
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
8-214 |
2.28e-26 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 102.63 E-value: 2.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQS------IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLI--PLDNGTILFNNKDIKEwkeELFENV 79
Cdd:cd03213 7 RNLTVTVKSSPsksgkqLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRtgLGVSGEVLINGRPLDK---RSFRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GCFIDSPTY-YPNLTAYENLAYVQKMinkpldeidRVLkitgiykakdkkvkdfSLGMKQRLGISFAILNDPKILILDEP 158
Cdd:cd03213 84 IGYVPQDDIlHPTLTVRETLMFAAKL---------RGL----------------SGGERKRVSIALELVSNPSLLFLDEP 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 159 TNGLDPEGVHEIRRLLLHLVkNEGKTIFISSHNL-AEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03213 139 TSGLDSSSALQVMSLLRRLA-DTGRTIICSIHQPsSEIFELFDKLLLLSQGRVIYFG 194
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-226 |
2.36e-26 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 104.35 E-value: 2.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRML---LGLIPldN----GTILFNNKDIKEWKE 73
Cdd:COG1117 8 LEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrmNDLIP--GarveGEILLDGEDIYDPDV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 74 ELFE---NVGCFIDSPTYYPnLTAYENLAY---VQKMINKP-LDEI-DRVLKITGIYkakdKKVKD--------FSLGMK 137
Cdd:COG1117 86 DVVElrrRVGMVFQKPNPFP-KSIYDNVAYglrLHGIKSKSeLDEIvEESLRKAALW----DEVKDrlkksalgLSGGQQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 138 QRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLN 217
Cdd:COG1117 161 QRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD--YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTE 238
|
250
....*....|....*
gi 1261268081 218 SIITS------REYI 226
Cdd:COG1117 239 QIFTNpkdkrtEDYI 253
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
7-215 |
4.60e-26 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 107.46 E-value: 4.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 7 TKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFnNKDIKewkeelfenVGCFIDSP 86
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSI-PKGLR---------IGYLPQEP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 87 TYYPNLTAYEN--------------LAYVQKMINKPLDEIDRVLKITGIYKAK-----------------------DKKV 129
Cdd:COG0488 71 PLDDDLTVLDTvldgdaelraleaeLEELEAKLAEPDEDLERLAELQEEFEALggweaearaeeilsglgfpeedlDRPV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 130 KDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVheirRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGN 209
Cdd:COG0488 151 SELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESI----EWLEEFLKNYPGTVLVVSHDRYFLDRVATRILELDRGK 226
|
....*..
gi 1261268081 210 L-LYEGN 215
Cdd:COG0488 227 LtLYPGN 233
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-222 |
4.76e-26 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 103.59 E-value: 4.76e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 15 DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLD------NGTILFNNKDIKEWKE-ELFENVGCFIDSPT 87
Cdd:PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYdskikvDGKVLYFGKDIFQIDAiKLRKEVGMVFQQPN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 88 YYPNLTAYENLAYV--------QKMINKPLDEIDRVLKI-TGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEP 158
Cdd:PRK14246 101 PFPHLSIYDNIAYPlkshgikeKREIKKIVEECLRKVGLwKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 159 TNGLDPEGVHEIRRLLLHLvKNEgKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:PRK14246 181 TSMIDIVNSQAIEKLITEL-KNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
5-230 |
5.38e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 103.62 E-value: 5.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSF-DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFE---NVG 80
Cdd:PRK13639 2 LETRDLKYSYpDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEvrkTVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSP---TYYPnlTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:PRK13639 82 IVFQNPddqLFAP--TVEEDVAFGPLNLGLSKEEVEKrvkeALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 154 ILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREYIVHVN 230
Cdd:PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKAN 235
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
22-214 |
5.41e-26 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 102.37 E-value: 5.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLS-VPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELF-----ENVGCFIDSPTYYPNLTAY 95
Cdd:cd03297 14 TLKIDfDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINlppqqRKIGLVFQQYALFPHLNVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 96 ENLAYVQKMI--NKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRL 173
Cdd:cd03297 94 ENLAFGLKRKrnREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1261268081 174 LLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03297 174 LKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
15-210 |
1.22e-25 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 99.98 E-value: 1.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 15 DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFEnvgcfidsptyypnlta 94
Cdd:cd03246 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELG----------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 95 yENLAYVqkminkPLDeiDRVLKITgiykakdkkVKD--FSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRR 172
Cdd:cd03246 76 -DHVGYL------PQD--DELFSGS---------IAEniLSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
|
170 180 190
....*....|....*....|....*....|....*...
gi 1261268081 173 LLLHLvKNEGKTIFISSHNLAEIEMiADHIALLHKGNL 210
Cdd:cd03246 138 AIAAL-KAAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
5-298 |
1.92e-25 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 106.64 E-value: 1.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGcf 82
Cdd:TIGR01257 1938 LRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG-- 2015
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 idsptYYPN-------LTAYENLAYVQKMINKPLDEIDRV----LKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPK 151
Cdd:TIGR01257 2016 -----YCPQfdaiddlLTGREHLYLYARLRGVPAEEIEKVanwsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 152 ILILDEPTNGLDPEGvheiRRLLLHLVKN---EGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS--REYI 226
Cdd:TIGR01257 2091 LVLLDEPTTGMDPQA----RRMLWNTIVSiirEGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKfgDGYI 2166
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 227 VHVN----------DTTATERILNTeDIPYSIEKE---GVFKLMIDQNSVPNLTRILI--KNDIDIFEVSPKKLTLEEVF 291
Cdd:TIGR01257 2167 VTMKikspkddllpDLNPVEQFFQG-NFPGSVQRErhyNMLQFQVSSSSLARIFQLLIshKDSLLIEEYSVTQTTLDQVF 2245
|
....*..
gi 1261268081 292 LSLTKQK 298
Cdd:TIGR01257 2246 VNFAKQQ 2252
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-202 |
2.04e-25 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 105.49 E-value: 2.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKewkeelfenvg 80
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVR----------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 cfIDSP---------------TYYPNLTAYENLAYVQKMINKPLdeIDR---------VLKITGIYKAKDKKVKDFSLGM 136
Cdd:COG1129 70 --FRSPrdaqaagiaiihqelNLVPNLSVAENIFLGREPRRGGL--IDWramrrrareLLARLGLDIDPDTPVGDLSVAQ 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 137 KQRLGISFAILNDPKILILDEPTNGLDPegvHEIRRL--LLHLVKNEGKTI-FIsSHNLAEIEMIADHI 202
Cdd:COG1129 146 QQLVEIARALSRDARVLILDEPTASLTE---REVERLfrIIRRLKAQGVAIiYI-SHRLDEVFEIADRV 210
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
5-215 |
3.14e-25 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 100.77 E-value: 3.14e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFD-NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGCF 82
Cdd:cd03253 1 IEFENVTFAYDpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTlDSLRRAIGVV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 -IDSPTYypNLTAYENLAYVQkmINKPLDEIDRVLKITGIY-------KAKDKKVKD----FSLGMKQRLGISFAILNDP 150
Cdd:cd03253 81 pQDTVLF--NDTIGYNIRYGR--PDATDEEVIEAAKAAQIHdkimrfpDGYDTIVGErglkLSGGEKQRVAIARAILKNP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 151 KILILDEPTNGLDPEGVHEIRRLLLHLVKneGKTIFISSHNLAEIeMIADHIALLHKGNLLYEGN 215
Cdd:cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTI-VNADKIIVLKDGRIVERGT 218
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
16-208 |
3.49e-25 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 100.69 E-value: 3.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 16 NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGCFIDSPTYYPNlTA 94
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNlRWLRSQIGLVSQEPVLFDG-TI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 95 YENLAYVQKmiNKPLDEIDRVLKITGIYKAKDKKVKDF-----------SLGMKQRLGISFAILNDPKILILDEPTNGLD 163
Cdd:cd03249 94 AENIRYGKP--DATDEEVEEAAKKANIHDFIMSLPDGYdtlvgergsqlSGGQKQRIAIARALLRNPKILLLDEATSALD 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1261268081 164 PEGVHEIRRLLLHLVKneGKTIFISSHNLAEIeMIADHIALLHKG 208
Cdd:cd03249 172 AESEKLVQEALDRAMK--GRTTIVIAHRLSTI-RNADLIAVLQNG 213
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
8-203 |
4.55e-25 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 102.05 E-value: 4.55e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIP---LDNGTILFNNKDI-----KEWKEEL 75
Cdd:COG0444 5 RNLKVYFPTRRgvvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPppgITSGEILFDGEDLlklseKELRKIR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVGC-FIDSPTYY-PNLTAYENLAYVQKmINKPLD------EIDRVLKITGIYKAKDkkVKD-----FSLGMKQRLGI 142
Cdd:COG0444 85 GREIQMiFQDPMTSLnPVMTVGDQIAEPLR-IHGGLSkaeareRAIELLERVGLPDPER--RLDrypheLSGGMRQRVMI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 143 SFAILNDPKILILDEPTNGLDpegV---HEIRRLLLHLVKNEGKT-IFIsSHNLAEIEMIADHIA 203
Cdd:COG0444 162 ARALALEPKLLIADEPTTALD---VtiqAQILNLLKDLQRELGLAiLFI-THDLGVVAEIADRVA 222
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
2-216 |
4.70e-25 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 104.38 E-value: 4.70e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 2 KLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkdikewkeELFENVgc 81
Cdd:COG0488 313 KKVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTV------------KLGETV-- 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 fidSPTYY--------PNLTAYENL-------------AYVQKMINKPldeiDRVlkitgiykakDKKVKDFSLGMKQRL 140
Cdd:COG0488 379 ---KIGYFdqhqeeldPDKTVLDELrdgapggteqevrGYLGRFLFSG----DDA----------FKPVGVLSGGEKARL 441
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 141 GISFAILNDPKILILDEPTNGLDPEGvheiRRLLLHLVKN-EGkTIFISSHNLAEIEMIADHIALLHKGNL-LYEGNL 216
Cdd:COG0488 442 ALAKLLLSPPNVLLLDEPTNHLDIET----LEALEEALDDfPG-TVLLVSHDRYFLDRVATRILEFEDGGVrEYPGGY 514
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
5-214 |
5.47e-25 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 98.54 E-value: 5.47e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVgCF 82
Cdd:cd03247 1 LSINNVSFSYPEQEqqVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLI-SV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSPTYYPNLTAYENLAyvqkminkpldeidrvlkitgiykakdkkvKDFSLGMKQRLGISFAILNDPKILILDEPTNGL 162
Cdd:cd03247 80 LNQRPYLFDTTLRNNLG------------------------------RRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 163 DPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIEMiADHIALLHKGNLLYEG 214
Cdd:cd03247 130 DPITERQLLSLIFEVLKD--KTLIWITHHLTGIEH-MDKILFLENGKIIMQG 178
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
5-230 |
8.23e-25 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 102.61 E-value: 8.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELfENVGCFID 84
Cdd:PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ-RPINMMFQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVQKMINKPLDEI-DRVLKITGIYKAKD---KKVKDFSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIaSRVNEMLGLVHMQEfakRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 161 GLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSII---TSR---EYIVHVN 230
Cdd:PRK11607 179 ALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYehpTTRysaEFIGSVN 254
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
5-229 |
8.65e-25 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 99.78 E-value: 8.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILF-------NNKDIKEWKEE--- 74
Cdd:PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVdglkvndPKVDERLIRQEagm 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 LFENVGCFidsptyyPNLTAYENLAY----VQKMINKPLDEIDR-VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILND 149
Cdd:PRK09493 82 VFQQFYLF-------PHLTALENVMFgplrVRGASKEEAEKQAReLLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLVkNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS------R 223
Cdd:PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLA-EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNppsqrlQ 233
|
....*.
gi 1261268081 224 EYIVHV 229
Cdd:PRK09493 234 EFLQHV 239
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
5-222 |
1.26e-24 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 100.06 E-value: 1.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW-KEELFENVGCFI 83
Cdd:PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYaSKEVARRIGLLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 DSPTYYPNLTAYENLAYvQKMINKPL---------DEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILI 154
Cdd:PRK10253 88 QNATTPGDITVQELVAR-GRYPHQPLftrwrkedeEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 155 LDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:PRK10253 167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
8-210 |
1.81e-24 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 101.26 E-value: 1.81e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEwKEELFENVGCFIDSPT 87
Cdd:PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND-VPPAERGVGMVFQSYA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 88 YYPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLD 163
Cdd:PRK11000 86 LYPHLSVAENMSFGLKLAGAKKEEINQrvnqVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1261268081 164 PEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:PRK11000 166 AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
8-214 |
1.84e-24 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 100.95 E-value: 1.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKewKEELFENVGCFI-DSP 86
Cdd:PRK11432 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT--HRSIQQRDICMVfQSY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 87 TYYPNLTAYENLAYVQKMINKPLDEI-DRV---LKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGL 162
Cdd:PRK11432 88 ALFPHMSLGENVGYGLKMLGVPKEERkQRVkeaLELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 163 DPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:PRK11432 168 DANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
5-214 |
3.02e-24 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 97.90 E-value: 3.02e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIvrDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE------LF-E 77
Cdd:COG3840 2 LRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAerpvsmLFqE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 NvgcfidspTYYPNLTAYENLAY----------VQKminkplDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAIL 147
Cdd:COG3840 80 N--------NLFPHLTVAQNIGLglrpglkltaEQR------AQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLV 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 148 NDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:COG3840 146 RKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADG 212
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
3-205 |
3.12e-24 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 101.98 E-value: 3.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQS-IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE-LFENVG 80
Cdd:TIGR02857 320 SSLEFSGVSVAYPGRRpALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADsWRDQIA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYPNlTAYENLAYVQKmiNKPLDEIDRVLKITGIYKA-------KDKKVKD----FSLGMKQRLGISFAILND 149
Cdd:TIGR02857 400 WVPQHPFLFAG-TIAENIRLARP--DASDAEIREALERAGLDEFvaalpqgLDTPIGEggagLSGGQAQRLALARAFLRD 476
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLVknEGKTIFISSHNLAEIEMiADHIALL 205
Cdd:TIGR02857 477 APLLLLDEPTAHLDAETEAEVLEALRALA--QGRTVLLVTHRLALAAL-ADRIVVL 529
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
4-214 |
7.37e-24 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 96.50 E-value: 7.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSI--VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVG 80
Cdd:cd03245 2 RIEFRNVSFSYPNQEIpaLDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDpADLRRNIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYpNLTAYENLAYVQKMINKplDEIDRVLKITGIYKAKDKKVKDFSL-----------GMKQRLGISFAILND 149
Cdd:cd03245 82 YVPQDVTLF-YGTLRDNITLGAPLADD--ERILRAAELAGVTDFVNKHPNGLDLqigergrglsgGQRQAVALARALLND 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 150 PKILILDEPTNGLDPEG----VHEIRRLLlhlvknEGKTIFISSHNLAEIEMiADHIALLHKGNLLYEG 214
Cdd:cd03245 159 PPILLLDEPTSAMDMNSeerlKERLRQLL------GDKTLIIITHRPSLLDL-VDRIIVMDSGRIVADG 220
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
2-226 |
1.10e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 97.37 E-value: 1.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 2 KLAIQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI-KEWKEELFEN 78
Cdd:PRK13632 5 SVMIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIsKENLKEIRKK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFIDSP-TYYPNLTAYENLAY--VQKMIN--KPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:PRK13632 85 IGIIFQNPdNQFIGATVEDDIAFglENKKVPpkKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 154 ILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIeMIADHIALLHKGNLLYEGNLNSIITSREYI 226
Cdd:PRK13632 165 IFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEILNNKEIL 236
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
5-219 |
1.21e-23 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 100.24 E-value: 1.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFI- 83
Cdd:PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIi 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 -DSPTYYPNLTAYENLaYVQKMINKPLDEIDRV------------LKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDP 150
Cdd:PRK09700 86 yQELSVIDELTVLENL-YIGRHLTKKVCGVNIIdwremrvraammLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 151 KILILDEPTNGLDPEGVHEIrRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSI 219
Cdd:PRK09700 165 KVIIMDEPTSSLTNKEVDYL-FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
5-214 |
2.03e-23 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 96.76 E-value: 2.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW-KEELFE---NVG 80
Cdd:PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMsRSRLYTvrkRMS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYPNLTAYENLAYvqkminkPLDEIDRV------------LKITGIYKAKDKKVKDFSLGMKQRLGISFAILN 148
Cdd:PRK11831 88 MLFQSGALFTDMNVFDNVAY-------PLREHTQLpapllhstvmmkLEAVGLRGAAKLMPSELSGGMARRAALARAIAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 149 DPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHG 226
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
22-222 |
2.46e-23 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 97.88 E-value: 2.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELF-----ENVGCFIDSPTYYPNLTAYE 96
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFlppekRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 97 NLAYVQKMINKPLDEI--DRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLL 174
Cdd:TIGR02142 95 NLRYGMKRARPSERRIsfERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1261268081 175 LHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:TIGR02142 175 ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
3-215 |
2.57e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 96.66 E-value: 2.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQS-----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFE 77
Cdd:PRK13637 1 MSIKIENLTHIYMEGTpfekkALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 ---NVGCFIDSPTYypNL---TAYENLAYVQKMINKPLDEI-DRV---LKITGI--YKAKDKKVKDFSLGMKQRLGISFA 145
Cdd:PRK13637 81 irkKVGLVFQYPEY--QLfeeTIEKDIAFGPINLGLSEEEIeNRVkraMNIVGLdyEDYKDKSPFELSGGQKRRVAIAGV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 146 ILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGN 215
Cdd:PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
16-208 |
9.52e-23 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 97.90 E-value: 9.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 16 NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE--------------ELF----- 76
Cdd:COG4618 344 KRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDReelgrhigylpqdvELFdgtia 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 ENVGCFidsptyyPNLTAYE-----NLAYVQKMINK-------PLDEIDRVLkitgiykakdkkvkdfSLGMKQRLGISF 144
Cdd:COG4618 424 ENIARF-------GDADPEKvvaaaKLAGVHEMILRlpdgydtRIGEGGARL----------------SGGQRQRIGLAR 480
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 145 AILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEmIADHIALLHKG 208
Cdd:COG4618 481 ALYGDPRLVVLDEPNSNLDDEGEAALAAAIRAL-KARGATVVVITHRPSLLA-AVDKLLVLRDG 542
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
4-214 |
9.71e-23 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 94.43 E-value: 9.71e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK---------EE 74
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARslsqqkgliRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 LFENVGCFIDSPTYYPNLTAYENL----AYVQKMINKPLDEIDR-VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILND 149
Cdd:PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIiegpVIVKGEPKEEATARAReLLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-214 |
2.85e-22 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 93.30 E-value: 2.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGCF 82
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSpAELARRRAVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSPTY-YPnLTAYEnlayVQKM-------INKPLDEI-DRVLKITGIYKAKDKKVKDFSLGMKQRLgiSFA-IL----- 147
Cdd:PRK13548 82 PQHSSLsFP-FTVEE----VVAMgraphglSRAEDDALvAAALAQVDLAHLAGRDYPQLSGGEQQRV--QLArVLaqlwe 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 148 --NDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSH--NLAeiEMIADHIALLHKGNLLYEG 214
Cdd:PRK13548 155 pdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHdlNLA--ARYADRIVLLHQGRLVADG 223
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
20-208 |
2.86e-22 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 92.53 E-value: 2.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE---LFENVGCFidsptyyPNLTAYE 96
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDrmvVFQNYSLL-------PWLTVRE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 97 NLAYVQKMINKPLDE------IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEI 170
Cdd:TIGR01184 74 NIALAVDRVLPDLSKserraiVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 1261268081 171 RRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:TIGR01184 154 QEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
5-210 |
4.08e-22 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 92.15 E-value: 4.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS---IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE-LFENVG 80
Cdd:cd03248 12 VKFQNVTFAYPTRPdtlVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKyLHSKVS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYPNlTAYENLAYvqKMINKPLDEI----------DRVLKI-TGIYKAKDKKVKDFSLGMKQRLGISFAILND 149
Cdd:cd03248 92 LVGQEPVLFAR-SLQDNIAY--GLQSCSFECVkeaaqkahahSFISELaSGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHlvKNEGKTIFISSHNLAEIEMiADHIALLHKGNL 210
Cdd:cd03248 169 PQVLILDEATSALDAESEQQVQQALYD--WPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
22-222 |
7.52e-22 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 94.01 E-value: 7.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDikewkeeLF-ENVGCFIdsPTY------------ 88
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEV-------LQdSARGIFL--PPHrrrigyvfqear 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 89 -YPNLTAYENLAYVQKMINKPLDEI--DRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPE 165
Cdd:COG4148 88 lFPHLSVRGNLLYGRKRAPRAERRIsfDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 166 GVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:COG4148 168 RKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSR 224
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-225 |
8.30e-22 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 95.28 E-value: 8.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 2 KLAIQTKNLTKSFDNQ--SIVRDLNLSVPEGSLYAFIGPNGAGKTTtmrmLLGLI-----PlDNGTILFNNKDIKEWKEE 74
Cdd:PRK11160 336 QVSLTLNNVSFTYPDQpqPVLKGLSLQIKAGEKVALLGRTGCGKST----LLQLLtrawdP-QQGEILLNGQPIADYSEA 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 LFENVGCFIDSPTYYPNLTAYENLAYVQKMINKplDEIDRVLKITGIYK-AKDKKVKD---------FSLGMKQRLGISF 144
Cdd:PRK11160 411 ALRQAISVVSQRVHLFSATLRDNLLLAAPNASD--EALIEVLQQVGLEKlLEDDKGLNawlgeggrqLSGGEQRRLGIAR 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 145 AILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIE-MiaDHIALLHKGNLLYEGNLNSIITSR 223
Cdd:PRK11160 489 ALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN--KTVLMITHRLTGLEqF--DRICVMDNGQIIEQGTHQELLAQQ 564
|
..
gi 1261268081 224 EY 225
Cdd:PRK11160 565 GR 566
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-219 |
8.72e-22 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 95.12 E-value: 8.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVG 80
Cdd:PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFI--DSPTYYPNLTAYENLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEP 158
Cdd:PRK15439 88 IYLvpQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 159 TNGLDPegvHEIRRLLLHL--VKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSI 219
Cdd:PRK15439 168 TASLTP---AETERLFSRIreLLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
15-225 |
9.43e-22 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 91.39 E-value: 9.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 15 DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI----KEWkeeLFENVGCFIDSPTYYp 90
Cdd:cd03252 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLaladPAW---LRRQVGVVLQENVLF- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 91 NLTAYENLAYVQKMInkPLDEIDRVLKITGIY-------KAKDKKVKD----FSLGMKQRLGISFAILNDPKILILDEPT 159
Cdd:cd03252 89 NRSIRDNIALADPGM--SMERVIEAAKLAGAHdfiselpEGYDTIVGEqgagLSGGQRQRIAIARALIHNPRILIFDEAT 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 160 NGLDPEGVHEIRRLLLHLVKneGKTIFISSHNLAEIeMIADHIALLHKGNLLYEGNLNSIITSREY 225
Cdd:cd03252 167 SALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTV-KNADRIIVMEKGRIVEQGSHDELLAENGL 229
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
29-214 |
9.56e-22 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 95.11 E-value: 9.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 29 EGSLYAFIGPNGAGKTTTMRMLLGLIPLD---NGTILFNNKDIKEWKeelFENVGCFI-DSPTYYPNLTAYENLaYVQKM 104
Cdd:TIGR00955 50 PGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIDAKE---MRAISAYVqQDDLFIPTLTVREHL-MFQAH 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 105 I----NKPLDE----IDRVLKITGIYKAKDKK------VKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEI 170
Cdd:TIGR00955 126 LrmprRVTKKEkrerVDEVLQALGLRKCANTRigvpgrVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV 205
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1261268081 171 RRLLLHLVkNEGKTIFISSHN-LAEIEMIADHIALLHKGNLLYEG 214
Cdd:TIGR00955 206 VQVLKGLA-QKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLG 249
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
5-214 |
9.58e-22 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 93.33 E-value: 9.58e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSI----VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE-ELFE-- 77
Cdd:PRK11153 2 IELKNISKVFPQGGRtihaLNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEkELRKar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 -NVGC----FidsptyypNL----TAYENLAYVQKMINKPLDEID-RV---LKITGIYKAKDKKVKDFSLGMKQRLGISF 144
Cdd:PRK11153 82 rQIGMifqhF--------NLlssrTVFDNVALPLELAGTPKAEIKaRVtelLELVGLSDKADRYPAQLSGGQKQRVAIAR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 145 AILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:PRK11153 154 ALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
5-208 |
1.49e-21 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 88.27 E-value: 1.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKdikewkeelfenvgcfid 84
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 sptyypnltayENLAYVQKMinkpldeidrvlkitgiykakdkkvkdfSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:cd03221 63 -----------VKIGYFEQL----------------------------SGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1261268081 165 EGVHEIRRLLlhlvKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:cd03221 104 ESIEALEEAL----KEYPGTVILVSHDRYFLDQVATKIIELEDG 143
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
7-178 |
1.50e-21 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 89.73 E-value: 1.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 7 TKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFIDSP 86
Cdd:TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 87 TYYPNLTAYENLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEG 166
Cdd:TIGR01189 83 GLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAG 162
|
170
....*....|..
gi 1261268081 167 VheirRLLLHLV 178
Cdd:TIGR01189 163 V----ALLAGLL 170
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-188 |
1.64e-21 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 94.19 E-value: 1.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 2 KLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkdikEWKEElfENVGc 81
Cdd:PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV--------KWSEN--ANIG- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 fidsptYYPNLTAYE-----NLAYVQKMINKPLDEIDRVLKITG--IYKAKD--KKVKDFSLGMKQRLGISFAILNDPKI 152
Cdd:PRK15064 386 ------YYAQDHAYDfendlTLFDWMSQWRQEGDDEQAVRGTLGrlLFSQDDikKSVKVLSGGEKGRMLFGKLMMQKPNV 459
|
170 180 190
....*....|....*....|....*....|....*.
gi 1261268081 153 LILDEPTNGLDPEGvheIRRLLLHLVKNEGKTIFIS 188
Cdd:PRK15064 460 LVMDEPTNHMDMES---IESLNMALEKYEGTLIFVS 492
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
3-210 |
8.22e-21 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 90.91 E-value: 8.22e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW--KEelfENVG 80
Cdd:PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLhaRD---RKVG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYPNLTAYENLAYVQKMI---NKP-LDEID----RVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKI 152
Cdd:PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLprrERPnAAAIKakvtQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 153 LILDEPTNGLDPEGVHEIRRLL--LHlvkNEGK--TIFIsSHNLAEIEMIADHIALLHKGNL 210
Cdd:PRK10851 158 LLLDEPFGALDAQVRKELRRWLrqLH---EELKftSVFV-THDQEEAMEVADRVVVMSQGNI 215
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
4-208 |
1.87e-20 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 88.22 E-value: 1.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE---LFENVG 80
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAErgvVFQNEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFidsptyyPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILD 156
Cdd:PRK11248 81 LL-------PWRNVQDNVAFGLQLAGVEKMQrleiAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 157 EPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
5-203 |
1.88e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 88.30 E-value: 1.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMR---MLLGLIP--LDNGTILFNNKDIKEWK---EELF 76
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRcfnRLNDLIPgfRVEGKVTFHGKNLYAPDvdpVEVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 ENVGCFIDSPTYYPNlTAYENLAYVQKmINK---PLDE-IDRVLKITGIY-KAKDK-KVKDFSL--GMKQRLGISFAILN 148
Cdd:PRK14243 91 RRIGMVFQKPNPFPK-SIYDNIAYGAR-INGykgDMDElVERSLRQAALWdEVKDKlKQSGLSLsgGQQQRLCIARAIAV 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 149 DPKILILDEPTNGLDPEGVHEIRRLLLHLVknEGKTIFISSHNLAEIEMIADHIA 203
Cdd:PRK14243 169 QPEVILMDEPCSALDPISTLRIEELMHELK--EQYTIIIVTHNMQQAARVSDMTA 221
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
16-215 |
2.41e-20 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 90.94 E-value: 2.41e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 16 NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE-LFENVGCFIDSPTYYpNLTA 94
Cdd:TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHyLHRQVALVGQEPVLF-SGSV 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 95 YENLAYvqKMINKPLDEIDRVLKI-----------TGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLD 163
Cdd:TIGR00958 572 RENIAY--GLTDTPDEEIMAAAKAanahdfimefpNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 164 PegvhEIRRLLLHLVKNEGKTIFISSHNLAEIEMiADHIALLHKGNLLYEGN 215
Cdd:TIGR00958 650 A----ECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGT 696
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
5-221 |
3.63e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 88.12 E-value: 3.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSF-DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK--EELFENVGC 81
Cdd:PRK13644 2 IRLENVSYSYpDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSklQGIRKLVGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSP-TYYPNLTAYENLAYVQKMINKPLDEI----DRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILD 156
Cdd:PRK13644 82 VFQNPeTQFVGRTVEEDLAFGPENLCLPPIEIrkrvDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 157 EPTNGLDPE-GVHEIRRL-LLHlvkNEGKTIFISSHNLAEIEmIADHIALLHKGNLLYEGNLNSIIT 221
Cdd:PRK13644 162 EVTSMLDPDsGIAVLERIkKLH---EKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
19-226 |
3.95e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 87.93 E-value: 3.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 19 IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLG-LIPLDNGTILFNNKDIKEWKEELF---ENVGCFIDSP-TYYPNLT 93
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlLLPDDNPNSKITVDGITLTAKTVWdirEKVGIVFQNPdNQFVGAT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 94 AYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHE 169
Cdd:PRK13640 102 VGDDVAFGLENRAVPRPEmikiVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 170 IRRLLLHLVKNEGKTIFISSHNLAEIEMiADHIALLHKGNLLYEGNLNSIITSREYI 226
Cdd:PRK13640 182 ILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFSKVEML 237
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
5-204 |
3.95e-20 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 86.01 E-value: 3.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVgCFI- 83
Cdd:PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL-LYLg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 DSPTYYPNLTAYENLAYVQKmINKPLDE--IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNG 161
Cdd:PRK13538 81 HQPGIKTELTALENLRFYQR-LHGPGDDeaLWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1261268081 162 LDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIAL 204
Cdd:PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
3-228 |
4.03e-20 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 86.99 E-value: 4.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRML-LGLIPlDNGTIL-------FNNKDIKEWKEE 74
Cdd:COG4161 1 MSIQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLnLLETP-DSGQLNiaghqfdFSQKPSEKAIRL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 LFENVGCFIDSPTYYPNLTAYENLayvqkmINKPLdeidRVLKITGiYKAKDKKVK--------DF--------SLGMKQ 138
Cdd:COG4161 80 LRQKVGMVFQQYNLWPHLTVMENL------IEAPC----KVLGLSK-EQAREKAMKllarlrltDKadrfplhlSGGQQQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 139 RLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNS 218
Cdd:COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQVVEIIREL-SQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDASH 227
|
250
....*....|....*
gi 1261268081 219 II---TSR--EYIVH 228
Cdd:COG4161 228 FTqpqTEAfaHYLSH 242
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-214 |
4.44e-20 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 87.09 E-value: 4.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EEL-------- 75
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSpWELarrravlp 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 ------FenvgcfidsptyypNLTAYEnlayVQKM------INKPLDE--IDRVLKITGIYKAKDKKVKDFSLGMKQRlg 141
Cdd:COG4559 82 qhsslaF--------------PFTVEE----VVALgraphgSSAAQDRqiVREALALVGLAHLAGRSYQTLSGGEQQR-- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 142 ISFA---------ILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSH--NLAeiEMIADHIALLHKGNL 210
Cdd:COG4559 142 VQLArvlaqlwepVDGGPRWLFLDEPTSALDLAHQHAVLRLARQLAR-RGGGVVAVLHdlNLA--AQYADRILLLHQGRL 218
|
....
gi 1261268081 211 LYEG 214
Cdd:COG4559 219 VAQG 222
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
22-234 |
4.51e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 87.77 E-value: 4.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILF---------NNKDIKEwkeeLFENVGCFIDsptyYPNL 92
Cdd:PRK13634 25 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIgervitagkKNKKLKP----LRKKVGIVFQ----FPEH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 93 TAYEnlAYVQKMI-----------NKPLDEIDRVLKITGI-YKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:PRK13634 97 QLFE--ETVEKDIcfgpmnfgvseEDAKQKAREMIELVGLpEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 161 GLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGnlnsiiTSREYIVHVNDTTA 234
Cdd:PRK13634 175 GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG------TPREIFADPDELEA 242
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
5-164 |
9.85e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 86.29 E-value: 9.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS-----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE----- 74
Cdd:COG1101 2 LELKNLSKTFNPGTvnekrALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYkraky 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 ---LFEN--VGCFidsptyyPNLTAYENLAYVQKMINKpldeidRVLKItGIYKAKDK----KVKDFSLGMKQRLG---- 141
Cdd:COG1101 82 igrVFQDpmMGTA-------PSMTIEENLALAYRRGKR------RGLRR-GLTKKRRElfreLLATLGLGLENRLDtkvg 147
|
170 180 190
....*....|....*....|....*....|....
gi 1261268081 142 ---------ISF--AILNDPKILILDEPTNGLDP 164
Cdd:COG1101 148 llsggqrqaLSLlmATLTKPKLLLLDEHTAALDP 181
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-213 |
1.06e-19 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 85.70 E-value: 1.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE--LFEN 78
Cdd:PRK11614 2 EKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAkiMREA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFIDSPTYYPNLTAYENLAYVQKMINKP--LDEIDRVLKI-TGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILIL 155
Cdd:PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDqfQERIKWVYELfPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 156 DEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYE 213
Cdd:PRK11614 162 DEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
13-224 |
1.07e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 86.34 E-value: 1.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 13 SFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW-KEELFENVGCFIDSP- 86
Cdd:PRK13648 14 SFQYQSdasfTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDnFEKLRKHIGIVFQNPd 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 87 -TYYPNLTAYEnLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNG 161
Cdd:PRK13648 94 nQFVGSIVKYD-VAFGLENHAVPYDEMHRrvseALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSM 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 162 LDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEiEMIADHIALLHKGNLLYEGNLNSIITSRE 224
Cdd:PRK13648 173 LDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AMEADHVIVMNKGTVYKEGTPTEIFDHAE 234
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
9-214 |
1.30e-19 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 86.18 E-value: 1.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 9 NLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI--------------KEWKEE 74
Cdd:PRK10619 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTInlvrdkdgqlkvadKNQLRL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 LFENVGCFIDSPTYYPNLTAYENL--AYVQKMINKPLDEIDRVLKI---TGI-YKAKDKKVKDFSLGMKQRLGISFAILN 148
Cdd:PRK10619 90 LRTRLTMVFQHFNLWSHMTVLENVmeAPIQVLGLSKQEARERAVKYlakVGIdERAQGKYPVHLSGGQQQRVSIARALAM 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 149 DPKILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:PRK10619 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
19-191 |
1.31e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 84.93 E-value: 1.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 19 IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKeelfenvgcFIDSPTYY-------PN 91
Cdd:PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD---------VAEACHYLghrnamkPA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 92 LTAYENLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIR 171
Cdd:PRK13539 88 LTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167
|
170 180
....*....|....*....|.
gi 1261268081 172 RLLL-HLvkNEGKTIFISSHN 191
Cdd:PRK13539 168 ELIRaHL--AQGGIVIAATHI 186
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
5-190 |
1.35e-19 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 83.74 E-value: 1.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLT-KSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkdIKEWKEELFenvgcFI 83
Cdd:cd03223 1 IELENLSlATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI------GMPEGEDLL-----FL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 DSPTYYPNLTAYENLAYvqkminkPLDEIdrvlkitgiykakdkkvkdFSLGMKQRLGISFAILNDPKILILDEPTNGLD 163
Cdd:cd03223 70 PQRPYLPLGTLREQLIY-------PWDDV-------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123
|
170 180
....*....|....*....|....*..
gi 1261268081 164 PEGvhEIRrlLLHLVKNEGKTIFISSH 190
Cdd:cd03223 124 EES--EDR--LYQLLKELGITVISVGH 146
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-225 |
1.36e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 86.30 E-value: 1.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIP-----------LDNGTILFNNKDIKEWK 72
Cdd:PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDkvsgyrysgdvLLGGRSIFNYRDVLEFR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 73 EElfenVGCFIDSPTYYPNLTAYENLAYVQKMINKPLDEIDRV----LKITGIYKAKDKKVKD----FSLGMKQRLGISF 144
Cdd:PRK14271 101 RR----VGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVaqarLTEVGLWDAVKDRLSDspfrLSGGQQQLLCLAR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 145 AILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVknEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSRE 224
Cdd:PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA--DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPK 254
|
.
gi 1261268081 225 Y 225
Cdd:PRK14271 255 H 255
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-214 |
1.37e-19 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 86.22 E-value: 1.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKE---WkeEL 75
Cdd:PRK13635 2 KEEIIRVEHISFRYPDAAtyALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEetvW--DV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVGCFIDSP-TYYPNLTAYENLAYVQKMINKPLDE-IDRV---LKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDP 150
Cdd:PRK13635 80 RRQVGMVFQNPdNQFVGATVQDDVAFGLENIGVPREEmVERVdqaLRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 151 KILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMiADHIALLHKGNLLYEG 214
Cdd:PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEG 222
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
20-222 |
1.63e-19 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 87.78 E-value: 1.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIK-----EWKEELFENVGCFIDSPTYYPNLTA 94
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAkisdaELREVRRKKIAMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 95 YENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEI 170
Cdd:PRK10070 124 LDNTAFGMELAGINAEERREkaldALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 171 RRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:PRK10070 204 QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
5-226 |
2.30e-19 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 85.83 E-value: 2.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELF---ENVGC 81
Cdd:PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLalrQQVAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSP---TYYPNLTAyeNLAYVQKMINKPLDEI----DRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILI 154
Cdd:PRK13638 82 VFQDPeqqIFYTDIDS--DIAFSLRNLGVPEAEItrrvDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 155 LDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREYI 226
Cdd:PRK13638 160 LDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAM 230
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
20-210 |
2.95e-19 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 83.25 E-value: 2.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKewkeelFENVGCFIDSPTYY---------- 89
Cdd:cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT------RRSPRDAIRAGIAYvpedrkregl 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 90 -PNLTAYENLAyvqkminkpldeIDRVLkitgiykakdkkvkdfSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVH 168
Cdd:cd03215 90 vLDLSVAENIA------------LSSLL----------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1261268081 169 EIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:cd03215 142 EIYRLIREL-ADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
12-229 |
5.68e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 85.06 E-value: 5.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 12 KSFDNQSivrdlnLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILF-------NNKDIKEWKEeLFENVGCFID 84
Cdd:PRK13645 25 KALNNTS------LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVgdyaipaNLKKIKEVKR-LRKEIGLVFQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYE--------NLAYVQKMINKPLDEIDRVLKITGIYKAKDKKvkDFSLGMKQRLGISFAILNDPKILILD 156
Cdd:PRK13645 98 FPEYQLFQETIEkdiafgpvNLGENKQEAYKKVPELLKLVQLPEDYVKRSPF--ELSGGQKRRVALAGIIAMDGNTLVLD 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 157 EPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREYIVHV 229
Cdd:PRK13645 176 EPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKI 248
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
5-222 |
7.56e-19 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 86.05 E-value: 7.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI-----KEWKEEL---- 75
Cdd:PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVealsaRAASRRVasvp 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 ------FENVGCFIDSPTYYPNLTAYENLAyvqkminkPLDE--IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAIL 147
Cdd:PRK09536 84 qdtslsFEFDVRQVVEMGRTPHRSRFDTWT--------ETDRaaVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 148 NDPKILILDEPTNGLDPEgvHEIRRL-LLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:PRK09536 156 QATPVLLLDEPTASLDIN--HQVRTLeLVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
4-246 |
8.55e-19 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 84.16 E-value: 8.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDN-QSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI-KEWKEELFENVGC 81
Cdd:PRK15056 6 GIVVNDVTVTWRNgHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTrQALQKNLVAYVPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYPNLTA-------YENLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILI 154
Cdd:PRK15056 86 SEEVDWSFPVLVEdvvmmgrYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVIL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 155 LDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLhKGNLLYEGNLNSIITSREY-------IV 227
Cdd:PRK15056 166 LDEPFTGVDVKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFTAENLelafsgvLR 243
|
250
....*....|....*....
gi 1261268081 228 HVNDTTATERILNTEDIPY 246
Cdd:PRK15056 244 HVALNGSEESIITDDERPF 262
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-214 |
9.04e-19 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 83.91 E-value: 9.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGT-----ILFNN--------KD 67
Cdd:PRK09984 1 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAgshieLLGRTvqregrlaRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 68 IKEWKEElfenVGCFIDSPTYYPNLTAYENLA----------------YVQKMINKPLDEIDRVlkitGIYKAKDKKVKD 131
Cdd:PRK09984 81 IRKSRAN----TGYIFQQFNLVNRLSVLENVLigalgstpfwrtcfswFTREQKQRALQALTRV----GMVHFAHQRVST 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 132 FSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLL 211
Cdd:PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232
|
...
gi 1261268081 212 YEG 214
Cdd:PRK09984 233 YDG 235
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
3-214 |
1.08e-18 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 83.14 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRML-LGLIPlDNGTI--------LFNNKDIKEWKe 73
Cdd:PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLnLLEMP-RSGTLniagnhfdFSKTPSDKAIR- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 74 ELFENVGCFIDSPTYYPNLTAYENLayvqkmINKPldeidrvLKITGIYKAKDKK----------VKDF--------SLG 135
Cdd:PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNL------IEAP-------CRVLGLSKDQALAraekllerlrLKPYadrfplhlSGG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 136 MKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHnlaEIEM---IADHIALLHKGNLLY 212
Cdd:PRK11124 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTH---EVEVarkTASRVVYMENGHIVE 221
|
..
gi 1261268081 213 EG 214
Cdd:PRK11124 222 QG 223
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
5-214 |
1.27e-18 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 85.92 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSF--DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCF 82
Cdd:TIGR02203 331 VEFRNVTFRYpgRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IDSPTYYPNLTAYENLAYvQKMINKPLDEIDRVLK-------ITGIYKAKDKKVKD----FSLGMKQRLGISFAILNDPK 151
Cdd:TIGR02203 411 VSQDVVLFNDTIANNIAY-GRTEQADRAEIERALAaayaqdfVDKLPLGLDTPIGEngvlLSGGQRQRLAIARALLKDAP 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 152 ILILDEPTNGLDPEGVHEIRRLLLHLVknEGKTIFISSHNLAEIEMiADHIALLHKGNLLYEG 214
Cdd:TIGR02203 490 ILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERG 549
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
5-219 |
1.53e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 82.90 E-value: 1.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRML--LG-LIP--LDNGTILFNNKDIKEWKE---ELF 76
Cdd:PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNdLNPevTITGSIVYNGHNIYSPRTdtvDLR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 ENVGCFIDSPTYYPnLTAYENLAYVQKMI----NKPLDE-IDRVLKITGIYKAKDKKVKDFSLGM----KQRLGISFAIL 147
Cdd:PRK14239 86 KEIGMVFQQPNPFP-MSIYENVVYGLRLKgikdKQVLDEaVEKSLKGASIWDEVKDRLHDSALGLsggqQQRVCIARVLA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 148 NDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSI 219
Cdd:PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDD--YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-231 |
1.91e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 83.24 E-value: 1.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQS---IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKE---WkeE 74
Cdd:PRK13650 1 MSNIIEVKNLTFKYKEDQekyTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEenvW--D 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 LFENVGCFIDSP-TYYPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILND 149
Cdd:PRK13650 79 IRHKIGMVFQNPdNQFVGATVEDDVAFGLENKGIPHEEmkerVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLaeiemiaDHIALLHKGNLLYEGNLNSIITSREYIVHV 229
Cdd:PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-------DEVALSDRVLVMKNGQVESTSTPRELFSRG 231
|
..
gi 1261268081 230 ND 231
Cdd:PRK13650 232 ND 233
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
5-255 |
3.47e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 84.47 E-value: 3.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGL--IPLDNGTILFN----------------NK 66
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYHvalcekcgyverpskvGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 67 DIKEWKEELFENVGCFID-SPTYYPNLTA------------YENLAYVQKMIN-------KPLDEIDRVLKITGIYKAKD 126
Cdd:TIGR03269 81 PCPVCGGTLEPEEVDFWNlSDKLRRRIRKriaimlqrtfalYGDDTVLDNVLEaleeigyEGKEAVGRAVDLIEMVQLSH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 127 KKV---KDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIA 203
Cdd:TIGR03269 161 RIThiaRDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 204 LLHKGNLLYEGNLNSIITsrEYIVHVNDTTATERILNTEDIP---------YSIEKeGVFK 255
Cdd:TIGR03269 241 WLENGEIKEEGTPDEVVA--VFMEGVSEVEKECEVEVGEPIIkvrnvskryISVDR-GVVK 298
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
22-214 |
8.49e-18 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 80.23 E-value: 8.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEwKEELFENVGCFIDSPTYYPNLTAYEN--LA 99
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA-APPADRPVSMLFQENNLFAHLTVEQNvgLG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 100 YVQKMINKPLDE--IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHL 177
Cdd:cd03298 95 LSPGLKLTAEDRqaIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 1261268081 178 VKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:cd03298 175 HAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
5-220 |
9.36e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 83.31 E-value: 9.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTK---SFDNQSI--VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDikEW-------- 71
Cdd:TIGR03269 280 IKVRNVSKryiSVDRGVVkaVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGD--EWvdmtkpgp 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 72 --KEELFENVGCFIDSPTYYPNLTAYENLAyvqKMINKPL-DEIDR-----VLKITGIYKAKDKKVKD-----FSLGMKQ 138
Cdd:TIGR03269 358 dgRGRAKRYIGILHQEYDLYPHRTVLDNLT---EAIGLELpDELARmkaviTLKMVGFDEEKAEEILDkypdeLSEGERH 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 139 RLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNS 218
Cdd:TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514
|
..
gi 1261268081 219 II 220
Cdd:TIGR03269 515 IV 516
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
5-204 |
1.65e-17 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 79.07 E-value: 1.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFID 84
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPTYYPNLTAYENLAYVQKMINKplDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:cd03231 81 APGIKTTLSVLENLRFWHADHSD--EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1261268081 165 EGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIAL 204
Cdd:cd03231 159 AGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
2-209 |
1.77e-17 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 81.29 E-value: 1.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 2 KLAIQTKNLTKSFDNQS-------------IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI 68
Cdd:PRK15079 6 KVLLEVADLKVHFDIKDgkqwfwqppktlkAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 69 -----KEWKEE------LFE----------NVGCFIDSP--TYYPNLTAYENLAYVQKMINK----PlDEIDRvlkitgi 121
Cdd:PRK15079 86 lgmkdDEWRAVrsdiqmIFQdplaslnprmTIGEIIAEPlrTYHPKLSRQEVKDRVKAMMLKvgllP-NLINR------- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 122 YKakdkkvKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKT-IFIsSHNLAEIEMIAD 200
Cdd:PRK15079 158 YP------HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSlIFI-AHDLAVVKHISD 230
|
....*....
gi 1261268081 201 HIALLHKGN 209
Cdd:PRK15079 231 RVLVMYLGH 239
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
5-220 |
2.02e-17 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 82.37 E-value: 2.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFD--NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFE---- 77
Cdd:PRK11176 342 IEFRNVTFTYPgkEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTlASLRNqval 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 ---NVGCFIDSptyYPNLTAY--------------ENLAYVQKMINKPLDEIDRVLKITGIYkakdkkvkdFSLGMKQRL 140
Cdd:PRK11176 422 vsqNVHLFNDT---IANNIAYarteqysreqieeaARMAYAMDFINKMDNGLDTVIGENGVL---------LSGGQRQRI 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 141 GISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIEMiADHIALLHKGNLLYEGNLNSII 220
Cdd:PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKN--RTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAELL 566
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
9-202 |
4.04e-17 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 81.39 E-value: 4.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 9 NLTKSFDNQSivrdlnLSVPEGSLYA-----FIGPNGAGKTTTMRMLLGLIPLDNGTILFNNK----------DIKEWKE 73
Cdd:PRK13409 345 DLTKKLGDFS------LEVEGGEIYEgevigIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKisykpqyikpDYDGTVE 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 74 ELFENVGCFIDSPTYYPNltayenlayvqkmINKPLDeIDRVLkitgiykakDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:PRK13409 419 DLLRSITDDLGSSYYKSE-------------IIKPLQ-LERLL---------DKNVKDLSGGELQRVAIAACLSRDADLY 475
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1261268081 154 ILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHI 202
Cdd:PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRL 524
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
11-226 |
4.56e-17 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 81.46 E-value: 4.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 11 TKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDN--GTILFNNKDIKEwkeELFENVGCFIDSPTY 88
Cdd:PLN03211 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTK---QILKRTGFVTQDDIL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 89 YPNLTAYENLAYVQKM-INKPLDEIDR------VLKITGIYKAKDKKV-----KDFSLGMKQRLGISFAILNDPKILILD 156
Cdd:PLN03211 152 YPHLTVRETLVFCSLLrLPKSLTKQEKilvaesVISELGLTKCENTIIgnsfiRGISGGERKRVSIAHEMLINPSLLILD 231
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 157 EPTNGLDPEGVHeirRLLLHLVK--NEGKTIFISSHN-LAEIEMIADHIALLHKGNLLYEGNLNSIITSREYI 226
Cdd:PLN03211 232 EPTSGLDATAAY---RLVLTLGSlaQKGKTIVTSMHQpSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
4-173 |
4.62e-17 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 80.27 E-value: 4.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDN-QSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI--KEWKEE----LF 76
Cdd:PRK11650 3 GLKLQAVRKSYDGkTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVneLEPADRdiamVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 ENvgcfidsptY--YPNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDP 150
Cdd:PRK11650 83 QN---------YalYPHMSVRENMAYGLKIRGMPKAEIEErvaeAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153
|
170 180
....*....|....*....|....*..
gi 1261268081 151 KILILDEPTNGLDPE-GVH---EIRRL 173
Cdd:PRK11650 154 AVFLFDEPLSNLDAKlRVQmrlEIQRL 180
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
21-210 |
5.65e-17 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 80.87 E-value: 5.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 21 RDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK------------EELFENVGCFIDSPTY 88
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALStaqrlarglvylPEDRQSSGLYLDAPLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 89 YpNLTA--YENLAYVQKminkPLDE---IDRVLKITGI-YKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGL 162
Cdd:PRK15439 360 W-NVCAltHNRRGFWIK----PAREnavLERYRRALNIkFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1261268081 163 DPEGVHEIRRLLLHLVKNEGKTIFISShNLAEIEMIADHIALLHKGNL 210
Cdd:PRK15439 435 DVSARNDIYQLIRSIAAQNVAVLFISS-DLEEIEQMADRVLVMHQGEI 481
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-213 |
6.54e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 80.82 E-value: 6.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI--KEWKEELFEN 78
Cdd:PRK10762 1 MQALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVtfNGPKSSQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFIDSPTYYPNLTAYENLAYVQKMIN--------KPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDP 150
Cdd:PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNrfgridwkKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 151 KILILDEPTNGL-DPEG---VHEIRRLllhlvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYE 213
Cdd:PRK10762 161 KVIIMDEPTDALtDTETeslFRVIREL-----KSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
8-208 |
7.43e-17 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 80.60 E-value: 7.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLD--NGTILFNN-----KDIKEwkeelFENVG 80
Cdd:NF040905 5 RGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGsyEGEILFDGevcrfKDIRD-----SEALG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFI--DSPTYYPNLTAYENL----AYVQKMI---NKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPK 151
Cdd:NF040905 80 IVIihQELALIPYLSIAENIflgnERAKRGVidwNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVK 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 152 ILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:NF040905 160 LLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDG 215
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
4-215 |
8.29e-17 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 80.53 E-value: 8.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSF-DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE-LFENVGC 81
Cdd:PRK10790 340 RIDIDNVSFAYrDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSvLRQGVAM 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSP-----TYYPNLT---------AYENLAYVQkminkpLDEIDRVLKiTGIYKAKDKKVKDFSLGMKQRLGISFAIL 147
Cdd:PRK10790 420 VQQDPvvladTFLANVTlgrdiseeqVWQALETVQ------LAELARSLP-DGLYTPLGEQGNNLSVGQKQLLALARVLV 492
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 148 NDPKILILDEPTNGLDPEGVHEIRRlLLHLVKnEGKTIFISSHNLAEIeMIADHIALLHKGNLLYEGN 215
Cdd:PRK10790 493 QTPQILILDEATANIDSGTEQAIQQ-ALAAVR-EHTTLVVIAHRLSTI-VEADTILVLHRGQAVEQGT 557
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
15-192 |
8.37e-17 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 80.48 E-value: 8.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 15 DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFIDSPTYYPNLTA 94
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTV 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 95 YENLayvqkMINKPL---DEIDRVLK-------ITGIYKAKDKKV----KDFSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:TIGR02868 426 RENL-----RLARPDatdEELWAALErvgladwLRALPDGLDTVLgeggARLSGGERQRLALARALLADAPILLLDEPTE 500
|
170 180 190
....*....|....*....|....*....|..
gi 1261268081 161 GLDPEGVHEIRRLLLHlvKNEGKTIFISSHNL 192
Cdd:TIGR02868 501 HLDAETADELLEDLLA--ALSGRTVVLITHHL 530
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
8-214 |
1.06e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 76.80 E-value: 1.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGlIP---LDNGTILFNNKDIKEWKEELFENVGCFI- 83
Cdd:cd03217 4 KDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPkyeVTEGEILFKGEDITDLPPEERARLGIFLa 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 -DSPTYYPNLTAYENLAYVQkminkpldeidrvlkitgiykakdkkvKDFSLGMKQRLGISFAILNDPKILILDEPTNGL 162
Cdd:cd03217 83 fQYPPEIPGVKNADFLRYVN---------------------------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGL 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 163 DPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMI-ADHIALLHKGNLLYEG 214
Cdd:cd03217 136 DIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG 187
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
5-227 |
1.31e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 78.59 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS-----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTI--LFNNKDIKEWKEELFE 77
Cdd:PRK13651 3 IKVKNIVKIFNKKLptelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewIFKDEKNKKKTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 NVGCFIDSPTYYPNLTAYENL-----------------AYVQKMI-----------NKPLDEIDRVLKITGIYKAKDKKV 129
Cdd:PRK13651 83 VLEKLVIQKTRFKKIKKIKEIrrrvgvvfqfaeyqlfeQTIEKDIifgpvsmgvskEEAKKRAAKYIELVGLDESYLQRS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 130 K-DFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNeGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:PRK13651 163 PfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDG 241
|
250
....*....|....*....
gi 1261268081 209 NLLYEGNLNSIITSREYIV 227
Cdd:PRK13651 242 KIIKDGDTYDILSDNKFLI 260
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
8-214 |
2.04e-16 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 77.03 E-value: 2.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGlIP---LDNGTILFNNKDIKEWKEELFENVGCFI- 83
Cdd:COG0396 4 KNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMG-HPkyeVTSGSILLDGEDILELSPDERARAGIFLa 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 -DSPTYYPNLTayeNLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVK------------DFSLGMKQRLGISFAILNDP 150
Cdd:COG0396 83 fQYPVEIPGVS---VSNFLRTALNARRGEELSAREFLKLLKEKMKELGldedfldryvneGFSGGEKKRNEILQMLLLEP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 151 KILILDEPTNGLD-------PEGVHEIRrlllhlvkNEGKTIFISSHN---LAEIEmiADHIALLHKGNLLYEG 214
Cdd:COG0396 160 KLAILDETDSGLDidalrivAEGVNKLR--------SPDRGILIITHYqriLDYIK--PDFVHVLVDGRIVKSG 223
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
4-220 |
2.06e-16 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 79.23 E-value: 2.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQS-IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW-KEELFENVGC 81
Cdd:PRK13657 334 AVEFDDVSFSYDNSRqGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVtRASLRRNIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYpNLTAYENLAyvqkmINKP---LDEIDRVLKITGIYKAKDKKVKDF-----------SLGMKQRLGISFAIL 147
Cdd:PRK13657 414 VFQDAGLF-NRSIEDNIR-----VGRPdatDEEMRAAAERAQAHDFIERKPDGYdtvvgergrqlSGGERQRLAIARALL 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 148 NDPKILILDEPTNGLDPEGVHEIRRLLLHLVKneGKTIFISSHNLAEIEMiADHIALLHKGNLLYEGNLNSII 220
Cdd:PRK13657 488 KDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDELV 557
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
22-226 |
2.25e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 77.47 E-value: 2.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNN---------KDIKEWKEElfenVGCFIDSP-TYYPN 91
Cdd:PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDivvsstskqKEIKPVRKK----VGVVFQFPeSQLFE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 92 LTAYENLAYVQKMINKPLDEIDRV----LKITGIYKA-KDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEG 166
Cdd:PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIaaekLEMVGLADEfWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 167 VHEIRRlLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREYI 226
Cdd:PRK13643 180 RIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFL 238
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
21-164 |
2.34e-16 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 79.40 E-value: 2.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 21 RDLNLSVPEGSLYAFIGPNGAGKTTtmrmLLGLIP----LDNGTILFNNKDIKEWKEElfENVGCFIdspTY-------- 88
Cdd:NF033858 18 DDVSLDIPAGCMVGLIGPDGVGKSS----LLSLIAgarkIQQGRVEVLGGDMADARHR--RAVCPRI---AYmpqglgkn 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 89 -YPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLD 163
Cdd:NF033858 89 lYPTLSVFENLDFFGRLFGQDAAErrrrIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVD 168
|
.
gi 1261268081 164 P 164
Cdd:NF033858 169 P 169
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
22-214 |
3.55e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 76.71 E-value: 3.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFN---------NKDIKEWKEElfenVGC---FIDSPTYy 89
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDdtlitstskNKDIKQIRKK----VGLvfqFPESQLF- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 90 pNLTAYENLAYVQKMINKPLDEIDRV----LKITGIYKA-KDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:PRK13649 100 -EETVLKDVAFGPQNFGVSQEEAEALarekLALVGISESlFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1261268081 165 EGVHEIRRLLLHLVKNeGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:PRK13649 179 KGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
5-214 |
4.31e-16 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 76.18 E-value: 4.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEEL--------- 75
Cdd:PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQiarmgvvrt 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVGCFidsptyyPNLTAYENLAYVQ-KMINKPL---------------DEIDRV---LKITGIYKAKDKKVKDFSLGM 136
Cdd:PRK11300 86 FQHVRLF-------REMTVIENLLVAQhQQLKTGLfsgllktpafrraesEALDRAatwLERVGLLEHANRQAGNLAYGQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 137 KQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEG 214
Cdd:PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
22-226 |
5.39e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 76.41 E-value: 5.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILF---------NNKDIKEWKEE-----------LFENVgc 81
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIagyhitpetGNKNLKKLRKKvslvfqfpeaqLFENT-- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYP-NLTAYEnlayvQKMINKPLDEIDRVlkitGIYKA-KDKKVKDFSLGMKQRLGISFAILNDPKILILDEPT 159
Cdd:PRK13641 103 VLKDVEFGPkNFGFSE-----DEAKEKALKWLKKV----GLSEDlISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 160 NGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREYI 226
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWL 239
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-229 |
5.55e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 76.28 E-value: 5.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLN---LSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIK-EWKEELF 76
Cdd:PRK13642 1 MNKILEVENLVFKYEKESDVNQLNgvsFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTaENVWNLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 ENVGCFIDSP-TYYPNLTAYENLAYVQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPK 151
Cdd:PRK13642 81 RKIGMVFQNPdNQFVGATVEDDVAFGMENQGIPREEmikrVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 152 ILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMiADHIALLHKGNLLYEGNLNSIITSREYIVHV 229
Cdd:PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSEDMVEI 237
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
20-226 |
6.44e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 76.36 E-value: 6.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI-KEWKEELFENVGCFIDSPTYYPNLTAYEN- 97
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITItHKTKDKYIRPVRKRIGMVFQFPESQLFEDt 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 98 ----LAYVQKMINKPLDEID----RVLKITGIYK-AKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVH 168
Cdd:PRK13646 103 vereIIFGPKNFKMNLDEVKnyahRLLMDLGFSRdVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 169 EIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREYI 226
Cdd:PRK13646 183 QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKL 240
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
5-228 |
1.01e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 76.04 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS-----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkdikeWKEELFENV 79
Cdd:PRK13631 22 LRVKNLYCVFDEKQenelvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI---------QVGDIYIGD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GCFIDSPTYYPNLTAYENLAYVQKMINKPL---------DEIDRVLKI----TGIYKAKDKKVKDFSL------------ 134
Cdd:PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFqfpeyqlfkDTIEKDIMFgpvaLGVKKSEAKKLAKFYLnkmglddsyler 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 135 -------GMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHlVKNEGKTIFISSHNLAEIEMIADHIALLHK 207
Cdd:PRK13631 173 spfglsgGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHTMEHVLEVADEVIVMDK 251
|
250 260
....*....|....*....|.
gi 1261268081 208 GNLLYEGNLNSIITSREYIVH 228
Cdd:PRK13631 252 GKILKTGTPYEIFTDQHIINS 272
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
3-208 |
1.13e-15 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 77.05 E-value: 1.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQtkNLTKSFDNQSIVR----DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIP-----LDNGTILFNNKDIKEWKE 73
Cdd:PRK15134 6 LAIE--NLSVAFRQQQTVRtvvnDVSLQIEAGETLALVGESGSGKSVTALSILRLLPsppvvYPSGDIRFHGESLLHASE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 74 ELFENV-GCFID----------SPTYYPNLTAYENLAYVQKMINKPL-DEIDRVLKITGIYKAKdKKVKDF----SLGMK 137
Cdd:PRK15134 84 QTLRGVrGNKIAmifqepmvslNPLHTLEKQLYEVLSLHRGMRREAArGEILNCLDRVGIRQAA-KRLTDYphqlSGGER 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 138 QRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
8-217 |
1.25e-15 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 74.68 E-value: 1.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLG--LIPLDNGTILFNNKDIKEWKEELFENVGCFI-- 83
Cdd:CHL00131 11 KNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGESILDLEPEERAHLGIFLaf 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 DSPTYYPNLTAYE--NLAYVQKMINKPLDEIDrVLKITGIYKAKDKKVK------------DFSLGMKQRLGISFAILND 149
Cdd:CHL00131 91 QYPIEIPGVSNADflRLAYNSKRKFQGLPELD-PLEFLEIINEKLKLVGmdpsflsrnvneGFSGGEKKRNEILQMALLD 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRlLLHLVKNEGKTIFISSH--NLAEIeMIADHIALLHKGNLLYEGNLN 217
Cdd:CHL00131 170 SELAILDETDSGLDIDALKIIAE-GINKLMTSENSIILITHyqRLLDY-IKPDYVHVMQNGKIIKTGDAE 237
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-215 |
1.32e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 75.12 E-value: 1.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQS------IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKE- 73
Cdd:PRK13633 1 MNEMIKCKNVSYKYESNEesteklALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 74 -ELFENVGCFIDSP------TYYPNLTAY--ENLAYVQKMINKPLDEidrVLKITGIYKAKDKKVKDFSLGMKQRLGISF 144
Cdd:PRK13633 81 wDIRNKAGMVFQNPdnqivaTIVEEDVAFgpENLGIPPEEIRERVDE---SLKKVGMYEYRRHAPHLLSGGQKQRVAIAG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 145 AILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIeMIADHIALLHKGNLLYEGN 215
Cdd:PRK13633 158 ILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGT 227
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
19-215 |
1.52e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 76.78 E-value: 1.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 19 IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE--------------LFenvgcfid 84
Cdd:COG5265 373 ILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQAslraaigivpqdtvLF-------- 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 sptyypNLTAYENLAYvqkmiNKP---LDEIDRVLK-------ITGIYKAKDKKV-----KdFSLGMKQRLGISFAILND 149
Cdd:COG5265 445 ------NDTIAYNIAY-----GRPdasEEEVEAAARaaqihdfIESLPDGYDTRVgerglK-LSGGEKQRVAIARTLLKN 512
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLVKneGKTIFISSHNLAEIeMIADHIALLHKGNLLYEGN 215
Cdd:COG5265 513 PPILIFDEATSALDSRTERAIQAALREVAR--GRTTLVIAHRLSTI-VDADEILVLEAGRIVERGT 575
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
9-202 |
1.91e-15 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 76.36 E-value: 1.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 9 NLTKSFDnqsivrDLNLSVPEGSLY-----AFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNK----------DIKEWKE 73
Cdd:COG1245 346 DLTKSYG------GFSLEVEGGEIRegevlGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLKisykpqyispDYDGTVE 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 74 ELFENV-GCFIDSPTYYPnltayenlayvqkminkpldEIDRVLKITGIYkakDKKVKDFSLGMKQRLGISFAILNDPKI 152
Cdd:COG1245 420 EFLRSAnTDDFGSSYYKT--------------------EIIKPLGLEKLL---DKNVKDLSGGELQRVAIAACLSRDADL 476
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1261268081 153 LILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHI 202
Cdd:COG1245 477 YLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRL 526
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
22-202 |
2.16e-15 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 73.98 E-value: 2.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLY-----AFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKeWKEELFEnvgcfIDSP-TYYPNLTAY 95
Cdd:cd03237 12 EFTLEVEGGSISeseviGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-YKPQYIK-----ADYEgTVRDLLSSI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 96 ENLAYVQKMINKpldEIDRVLKITGIYkakDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLL 175
Cdd:cd03237 86 TKDFYTHPYFKT---EIAKPLQIEQIL---DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
170 180
....*....|....*....|....*..
gi 1261268081 176 HLVKNEGKTIFISSHNLAEIEMIADHI 202
Cdd:cd03237 160 RFAENNEKTAFVVEHDIIMIDYLADRL 186
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
5-192 |
2.43e-15 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 73.70 E-value: 2.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSI----VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFN----NKDIKEWKEELF 76
Cdd:PRK11629 6 LQCDNLCKRYQEGSVqtdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNgqpmSKLSSAAKAELR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 ENVGCFIDSPTYY-PNLTAYENLAYVQKMINKPLDEIDR----VLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPK 151
Cdd:PRK11629 86 NQKLGFIYQFHHLlPDFTALENVAMPLLIGKKKPAEINSraleMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1261268081 152 ILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNL 192
Cdd:PRK11629 166 LVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
20-208 |
2.65e-15 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 75.88 E-value: 2.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDnGTILFNNKDIKEWKEE-----------LFE----------N 78
Cdd:COG4172 302 VDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIPSE-GEIRFDGQDLDGLSRRalrplrrrmqvVFQdpfgslsprmT 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFIDSP--TYYPNLTAYENLAYVQKMinkpLDEIdrvlkitGIykakDKKVKD-----FSLGMKQRLGISFAILNDPK 151
Cdd:COG4172 381 VGQIIAEGlrVHGPGLSAAERRARVAEA----LEEV-------GL----DPAARHrypheFSGGQRQRIAIARALILEPK 445
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 152 ILILDEPTNGLDpegV---HEIRRLLLHLVKNEGKT-IFIsSHNLAEIEMIADHIALLHKG 208
Cdd:COG4172 446 LLVLDEPTSALD---VsvqAQILDLLRDLQREHGLAyLFI-SHDLAVVRALAHRVMVMKDG 502
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
10-185 |
2.71e-15 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 73.34 E-value: 2.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 10 LTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFenVGCFIDSPTYY 89
Cdd:PRK13543 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRF--MAYLGHLPGLK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 90 PNLTAYENLAYVQKMIN-KPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVH 168
Cdd:PRK13543 95 ADLSTLENLHFLCGLHGrRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGIT 174
|
170
....*....|....*..
gi 1261268081 169 EIRRLLLHLVKNEGKTI 185
Cdd:PRK13543 175 LVNRMISAHLRGGGAAL 191
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
8-208 |
2.76e-15 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 75.92 E-value: 2.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI--KEWKEELFENVGCFIDS 85
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfKSSKEALENGISMVHQE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 86 PTYYPNLTAYENL---AYVQKMI----NKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEP 158
Cdd:PRK10982 82 LNLVLQRSVMDNMwlgRYPTKGMfvdqDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1261268081 159 TNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:PRK10982 162 TSSLTEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDG 210
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-219 |
3.98e-15 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 74.38 E-value: 3.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQ----SIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPlDNGTI----LFNNKDIKEWK 72
Cdd:PRK09473 9 ADALLDVKDLRVTFSTPdgdvTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIggsaTFNGREILNLP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 73 E-EL----FENVGCFIDSP--TYYPNLTAYENLAYVQkMINKPLD------EIDRVLKITGIYKAKdKKVK----DFSLG 135
Cdd:PRK09473 88 EkELnklrAEQISMIFQDPmtSLNPYMRVGEQLMEVL-MLHKGMSkaeafeESVRMLDAVKMPEAR-KRMKmyphEFSGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 136 MKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGN 215
Cdd:PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
....
gi 1261268081 216 LNSI 219
Cdd:PRK09473 246 ARDV 249
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-215 |
5.15e-15 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 74.97 E-value: 5.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkdikewkeELFENVgcfid 84
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI------------EIGETV----- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 sptyypnltayeNLAYVQKMiNKPLD-------EI---DRVLKITGI------------YKAKD--KKVKDFSLGMKQRL 140
Cdd:TIGR03719 386 ------------KLAYVDQS-RDALDpnktvweEIsggLDIIKLGKReipsrayvgrfnFKGSDqqKKVGQLSGGERNRV 452
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 141 GISFAILNDPKILILDEPTNGLDpegVHEIRRLLLHLVKNEGKTIFIsSHNLAEIEMIADHIallhkgnLLYEGN 215
Cdd:TIGR03719 453 HLAKTLKSGGNVLLLDEPTNDLD---VETLRALEEALLNFAGCAVVI-SHDRWFLDRIATHI-------LAFEGD 516
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
9-208 |
6.24e-15 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 74.56 E-value: 6.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 9 NLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKewkeelFENVGCFIDSP-- 86
Cdd:PRK11288 9 GIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR------FASTTAALAAGva 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 87 ------TYYPNLTAYENLAYVQ-----KMINKPL--DEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:PRK11288 83 iiyqelHLVPEMTVAENLYLGQlphkgGIVNRRLlnYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 154 ILDEPTNGLDpegVHEIRRL--LLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:PRK11288 163 AFDEPTSSLS---AREIEQLfrVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDG 216
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-192 |
1.24e-14 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 72.07 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkdikEWKEELfeNVG 80
Cdd:PRK09544 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--------KRNGKL--RIG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 cfidsptYYP---NLTAYENLAYVQKMINKP---LDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILI 154
Cdd:PRK09544 71 -------YVPqklYLDTTLPLTVNRFLRLRPgtkKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLV 143
|
170 180 190
....*....|....*....|....*....|....*...
gi 1261268081 155 LDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNL 192
Cdd:PRK09544 144 LDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
5-208 |
1.78e-14 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 73.42 E-value: 1.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDN--GTILFNNKDIKEWKEELFENVGCF 82
Cdd:PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTyeGEIIFEGEELQASNIRDTERAGIA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 I--DSPTYYPNLTAYENLAYVQKMI-------NKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:PRK13549 86 IihQELALVKELSVLENIFLGNEITpggimdyDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 154 ILDEPTNGLDPEgvhEIRRLL--LHLVKNEGKT-IFIsSHNLAEIEMIADHIALLHKG 208
Cdd:PRK13549 166 ILDEPTASLTES---ETAVLLdiIRDLKAHGIAcIYI-SHKLNEVKAISDTICVIRDG 219
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
8-208 |
1.89e-14 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 73.18 E-value: 1.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDN----QSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPlDN-----GTILFNNKDIKEWKEELFEN 78
Cdd:COG4172 10 EDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLP-DPaahpsGSILFDGQDLLGLSERELRR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 V-----GCFIDSPtyypnLTA-----------YENLAYVQKMINKPL-DEIDRVLKITGIYKAKdKKVKDF----SLGMK 137
Cdd:COG4172 89 IrgnriAMIFQEP-----MTSlnplhtigkqiAEVLRLHRGLSGAAArARALELLERVGIPDPE-RRLDAYphqlSGGQR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 138 QRLGISFAILNDPKILILDEPTNGLDpegV---HEIRRLLLHLVKNEGKTI-FIsSHNLAEIEMIADHIALLHKG 208
Cdd:COG4172 163 QRVMIAMALANEPDLLIADEPTTALD---VtvqAQILDLLKDLQRELGMALlLI-THDLGVVRRFADRVAVMRQG 233
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
3-215 |
1.89e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 73.34 E-value: 1.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLT-KSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIP-----LDNGTILfNNKDIKEWKEELF 76
Cdd:PRK11174 348 VTIEAEDLEiLSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPyqgslKINGIEL-RELDPESWRKHLS 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 ---ENvgcfidsptyyPNL---TAYENLAYVQKMINKplDEIDRVLKITGI-------YKAKDKKVKD----FSLGMKQR 139
Cdd:PRK11174 427 wvgQN-----------PQLphgTLRDNVLLGNPDASD--EQLQQALENAWVseflpllPQGLDTPIGDqaagLSVGQAQR 493
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 140 LGISFAILNDPKILILDEPTNGLDpegVHEIRRLLLHLVKN-EGKTIFISSHNLAEIEMIaDHIALLHKGNLLYEGN 215
Cdd:PRK11174 494 LALARALLQPCQLLLLDEPTASLD---AHSEQLVMQALNAAsRRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGD 566
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
17-190 |
2.59e-14 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 70.76 E-value: 2.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 17 QSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLlglipldngtilfnnkdikeWKEELFENVGCFIDSP--TYYPNLTA 94
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLL--------------------AGALKGTPVAGCVDVPdnQFGREASL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 95 YENLAyvqkmINKPLDEIDRVLKITGI-----YKAkdkKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHE 169
Cdd:COG2401 103 IDAIG-----RKGDFKDAVELLNAVGLsdavlWLR---RFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKR 174
|
170 180
....*....|....*....|.
gi 1261268081 170 IRRLLLHLVKNEGKTIFISSH 190
Cdd:COG2401 175 VARNLQKLARRAGITLVVATH 195
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
4-190 |
3.71e-14 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 72.53 E-value: 3.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLT-KSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKdikewkEELFenvgcF 82
Cdd:COG4178 362 ALALEDLTlRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARPAG------ARVL-----F 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 IdsP--TYYPNLTAYENLAYVQKMINKPLDEIDRVLKITGIYKAKDK--KVKD----FSLGMKQRLGISFAILNDPKILI 154
Cdd:COG4178 431 L--PqrPYLPLGTLREALLYPATAEAFSDAELREALEAVGLGHLAERldEEADwdqvLSLGEQQRLAFARLLLHKPDWLF 508
|
170 180 190
....*....|....*....|....*....|....*..
gi 1261268081 155 LDEPTNGLDPEGVHEIRRLLLHLVKNegkTIFIS-SH 190
Cdd:COG4178 509 LDEATSALDEENEAALYQLLREELPG---TTVISvGH 542
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
2-224 |
3.76e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 72.51 E-value: 3.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 2 KLAIQTKNLTkSFDNQSiVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK--EELFENV 79
Cdd:PRK09700 263 ETVFEVRNVT-SRDRKK-VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSplDAVKKGM 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GCFIDS---PTYYPNLTAYENLA----------------YVQKMINKPLDEIDRVLKITgiYKAKDKKVKDFSLGMKQRL 140
Cdd:PRK09700 341 AYITESrrdNGFFPNFSIAQNMAisrslkdggykgamglFHEVDEQRTAENQRELLALK--CHSVNQNITELSGGNQQKV 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 141 GISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVkNEGKTIFISSHNLAEIEMIADHIALLHkgnllyEGNLNSII 220
Cdd:PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSELPEIITVCDRIAVFC------EGRLTQIL 491
|
....
gi 1261268081 221 TSRE 224
Cdd:PRK09700 492 TNRD 495
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
5-208 |
5.15e-14 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 69.42 E-value: 5.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLT-----KSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNkdikewkeelfenv 79
Cdd:cd03250 1 ISVEDASftwdsGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 gcfidSPTYYP------NLTAYENLAYvqkmiNKPLDE--IDRVLKITG------IYKAKDKKV---KDFSL--GMKQRL 140
Cdd:cd03250 67 -----SIAYVSqepwiqNGTIRENILF-----GKPFDEerYEKVIKACAlepdleILPDGDLTEigeKGINLsgGQKQRI 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 141 GISFAILNDPKILILDEPTNGLDPE-GVHEIRRLLLHLVKNeGKTIFISSHNLAEIEmIADHIALLHKG 208
Cdd:cd03250 137 SLARAVYSDADIYLLDDPLSAVDAHvGRHIFENCILGLLLN-NKTRILVTHQLQLLP-HADQIVVLDNG 203
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
4-208 |
5.48e-14 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 70.21 E-value: 5.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGL-IPlDNGTILFNNKDIK------------E 70
Cdd:COG4598 8 ALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLeTP-DSGEIRVGGEEIRlkpdrdgelvpaD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 71 WK--EELFENVGCFIDSPTYYPNLTAYENLA----YVQKM-----INKPLDEIDRVlkitGIYKAKDKKVKDFSLGMKQR 139
Cdd:COG4598 87 RRqlQRIRTRLGMVFQSFNLWSHMTVLENVIeapvHVLGRpkaeaIERAEALLAKV----GLADKRDAYPAHLSGGQQQR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 140 LGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHnlaeiEM-----IADHIALLHKG 208
Cdd:COG4598 163 AAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAE-EGRTMLVVTH-----EMgfardVSSHVVFLHQG 230
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
8-222 |
5.69e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 70.20 E-value: 5.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFIdsPT 87
Cdd:PRK10575 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL--PQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 88 YYP---NLTAYENLAYVQKMINKPL--------DEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILD 156
Cdd:PRK10575 93 QLPaaeGMTVRELVAIGRYPWHGALgrfgaadrEKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 157 EPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHnlaEIEMIA---DHIALLHKGNLLYEGNLNSIITS 222
Cdd:PRK10575 173 EPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH---DINMAArycDYLVALRGGEMIAQGTPAELMRG 238
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
8-222 |
6.25e-14 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 71.09 E-value: 6.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQS----IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPlDNGTI-----LFNNKD-----IKEWKE 73
Cdd:COG4170 7 RNLTIEIDTPQgrvkAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITK-DNWHVtadrfRWNGIDllklsPRERRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 74 ELFENVGCFIDSPTYY--PNLTAYENLayVQKMINKPLD------------EIDRVLKITGIykaKDKKV------KDFS 133
Cdd:COG4170 86 IIGREIAMIFQEPSSCldPSAKIGDQL--IEAIPSWTFKgkwwqrfkwrkkRAIELLHRVGI---KDHKDimnsypHELT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 134 LGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYE 213
Cdd:COG4170 161 EGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVES 240
|
....*....
gi 1261268081 214 GNLNSIITS 222
Cdd:COG4170 241 GPTEQILKS 249
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
20-208 |
8.34e-14 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 71.20 E-value: 8.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKewkeelfenvgcfIDSPT--------YYP- 90
Cdd:COG1129 268 VRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVR-------------IRSPRdairagiaYVPe 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 91 ---------NLTAYEN--LAYVQKMINKPL-----------DEIDRV-LKITGIykakDKKVKDFSLGMKQRLGISFAIL 147
Cdd:COG1129 335 drkgeglvlDLSIRENitLASLDRLSRGGLldrrreralaeEYIKRLrIKTPSP----EQPVGNLSGGNQQKVVLAKWLA 410
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 148 NDPKILILDEPTNGLDpegV---HEIRRLLLHLVKnEGKTI-FISShNLAEIEMIADHIALLHKG 208
Cdd:COG1129 411 TDPKVLILDEPTRGID---VgakAEIYRLIRELAA-EGKAViVISS-ELPELLGLSDRILVMREG 470
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
16-220 |
8.83e-14 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 71.69 E-value: 8.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 16 NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFIDSPTYYPNLTAY 95
Cdd:TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 96 ENLaYVQKMINKPLDEIDRVLKITGIykakDKKVKDFSLGM---------------KQRLGISFAILNDPKILILDEPTN 160
Cdd:TIGR01193 566 ENL-LLGAKENVSQDEIWAACEIAEI----KDDIENMPLGYqtelseegssisggqKQRIALARALLTDSKVLILDESTS 640
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 161 GLDpegVHEIRRLLLHLVKNEGKTIFISSHNLaEIEMIADHIALLHKGNLLYEGNLNSII 220
Cdd:TIGR01193 641 NLD---TITEKKIVNNLLNLQDKTIIFVAHRL-SVAKQSDKIIVLDHGKIIEQGSHDELL 696
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
5-211 |
9.55e-14 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 69.06 E-value: 9.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQS--IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEW-KEELFENVGC 81
Cdd:cd03244 3 IEFKNVSLRYRPNLppVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIgLHDLRSRISI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYPNlTAYENLAyvqkminkPLD-----EIDRVLKITGIY-------KAKDKKVKD----FSLGMKQRLGISFA 145
Cdd:cd03244 83 IPQDPVLFSG-TIRSNLD--------PFGeysdeELWQALERVGLKefveslpGGLDTVVEEggenLSVGQRQLLCLARA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 146 ILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIeMIADHIALLHKGNLL 211
Cdd:cd03244 154 LLRKSKILVLDEATASVDPETDALIQKTIREAFKD--CTVLTIAHRLDTI-IDSDRILVLDKGRVV 216
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
15-215 |
1.42e-13 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 68.59 E-value: 1.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 15 DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELF-ENVGCFIDSPTYYPNlT 93
Cdd:PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYrQQVSYCAQTPTLFGD-T 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 94 AYENLAYVQKMINKPLDE---IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEI 170
Cdd:PRK10247 97 VYDNLIFPWQIRNQQPDPaifLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1261268081 171 RRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGN 215
Cdd:PRK10247 177 NEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEAR 221
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
30-210 |
2.18e-13 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 67.98 E-value: 2.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 30 GSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE----LFENVGCFIDSPTYYPNLTAYENLAYVQKMI 105
Cdd:PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRevpfLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 106 NKPLDEIDRVL-----KITGIYKAKDKKVKdFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKN 180
Cdd:PRK10908 108 GASGDDIRRRVsaaldKVGLLDKAKNFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-NR 185
|
170 180 190
....*....|....*....|....*....|
gi 1261268081 181 EGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:PRK10908 186 VGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
4-221 |
2.67e-13 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 69.38 E-value: 2.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTtmrmllGLIPldnGTILFNNKDIKEWK--------EEL 75
Cdd:NF000106 13 AVEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**R------GALP---AHV*GPDAGRRPWRf*twcanrRAL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVGCfiDSPTYY---PNLTAYENLAyvqkMINKPLD--------EIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISF 144
Cdd:NF000106 84 RRTIG*--HRPVR*grrESFSGRENLY----MIGR*LDlsrkdaraRADELLERFSLTEAAGRAAAKYSGGMRRRLDLAA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 145 AILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIIT 221
Cdd:NF000106 158 SMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVR-DGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKT 233
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
5-195 |
2.69e-13 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 70.44 E-value: 2.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQ---SIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNN----KDI--KEWKEEl 75
Cdd:PTZ00265 383 IQFKNVRFHYDTRkdvEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDshnlKDInlKWWRSK- 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 fenVGCFIDSPTYYPN---------LTAYENLAYVQKMINK---------------------PLDEIDRVLKITGIYKAK 125
Cdd:PTZ00265 462 ---IGVVSQDPLLFSNsiknnikysLYSLKDLEALSNYYNEdgndsqenknkrnscrakcagDLNDMSNTTDSNELIEMR 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 126 --------------DKKV--KDF-------------------SLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEI 170
Cdd:PTZ00265 539 knyqtikdsevvdvSKKVliHDFvsalpdkyetlvgsnasklSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618
|
250 260
....*....|....*....|....*
gi 1261268081 171 RRLLLHLVKNEGKTIFISSHNLAEI 195
Cdd:PTZ00265 619 QKTINNLKGNENRITIIIAHRLSTI 643
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
30-252 |
3.86e-13 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 69.50 E-value: 3.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 30 GSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK----EELFENVGCFIDSPtyYPNLTAYENLAYvqkMI 105
Cdd:PRK10261 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSpgklQALRRDIQFIFQDP--YASLDPRQTVGD---SI 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 106 NKPLdeidrvlKITGIY--KAKDKKVK------------------DFSLGMKQRLGISFAILNDPKILILDEPTNGLDPE 165
Cdd:PRK10261 425 MEPL-------RVHGLLpgKAAAARVAwllervgllpehawryphEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 166 GVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSREY--------IVHVNDTT--AT 235
Cdd:PRK10261 498 IRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHpytrklmaAVPVADPSrqRP 577
|
250
....*....|....*..
gi 1261268081 236 ERILNTEDIPYSIEKEG 252
Cdd:PRK10261 578 QRVLLSDDLPSNIHLRG 594
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
23-215 |
5.22e-13 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 67.17 E-value: 5.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 23 LNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPlDNGTILFNNKDIKEWK-EELFENVGCFIDSPTYYPNLTAYENLA-Y 100
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAGLLP-GQGEILLNGRPLSDWSaAELARHRAYLSQQQSPPFAMPVFQYLAlH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 101 VQKMINKPLDEiDRVLKITGIYKAKDK---KVKDFSLGMKQRLGISFAILN-------DPKILILDEPTNGLDpegvheI 170
Cdd:COG4138 94 QPAGASSEAVE-QLLAQLAEALGLEDKlsrPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEPMNSLD------V 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 171 R------RLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGN 215
Cdd:COG4138 167 AqqaaldRLLRELCQ-QGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGE 216
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
9-190 |
6.44e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 66.13 E-value: 6.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 9 NLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKE----WKEELfenvgCFID 84
Cdd:PRK13540 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKdlctYQKQL-----CFVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 SPT-YYPNLTAYENLAYVQKMINKPLdEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLD 163
Cdd:PRK13540 81 HRSgINPYLTLRENCLYDIHFSPGAV-GITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
170 180
....*....|....*....|....*...
gi 1261268081 164 PEGVHEI-RRLLLHlvKNEGKTIFISSH 190
Cdd:PRK13540 160 ELSLLTIiTKIQEH--RAKGGAVLLTSH 185
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
8-210 |
7.77e-13 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 67.01 E-value: 7.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE---LFENVgcfid 84
Cdd:PRK11247 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDtrlMFQDA----- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 85 sptyypNLTAYENLayvqkminkpldeIDRV-LKITGIYKAKDKKVKD--------------FSLGMKQRLGISFAILND 149
Cdd:PRK11247 91 ------RLLPWKKV-------------IDNVgLGLKGQWRDAALQALAavgladranewpaaLSGGQKQRVALARALIHR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 150 PKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-208 |
9.85e-13 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 68.31 E-value: 9.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLD--NGTILFNNKDIKEWKEELFENVGCF 82
Cdd:TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGtwDGEIYWSGSPLKASNIRDTERAGIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 83 I--DSPTYYPNLTAYEN------LAYVQKMINKPL-----DEIDRVLKITGIYKAkdKKVKDFSLGMKQRLGISFAILND 149
Cdd:TIGR02633 82 IihQELTLVPELSVAENiflgneITLPGGRMAYNAmylraKNLLRELQLDADNVT--RPVGDYGGGQQQLVEIAKALNKQ 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1261268081 150 PKILILDEPTNGL---DPEGVHEIRRLLlhlvKNEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:TIGR02633 160 ARLLILDEPSSSLtekETEILLDIIRDL----KAHGVACVYISHKLNEVKAVCDTICVIRDG 217
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
12-214 |
1.15e-12 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 65.75 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 12 KSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLD---NGTILFNNKDIKEWKEelfenvgcfidsptY 88
Cdd:cd03233 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAE--------------K 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 89 YPNLTAYENlayvQKMINKPL----DEIDRVLKITGiykakDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:cd03233 81 YPGEIIYVS----EEDVHFPTltvrETLDFALRCKG-----NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 165 EGVHEIRRLLLHLVKNEGKTIFISSHNLA-EIEMIADHIALLHKGNLLYEG 214
Cdd:cd03233 152 STALEILKCIRTMADVLKTTTFVSLYQASdEIYDLFDKVLVLYEGRQIYYG 202
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
22-219 |
1.43e-12 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 67.21 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELF-----ENVG-CFIDSpTYYPNLTAY 95
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIClppekRRIGyVFQDA-RLFPHYKVR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 96 ENLAYvqKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLD-PEgvheiRRLL 174
Cdd:PRK11144 95 GNLRY--GMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDlPR-----KREL 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1261268081 175 LHLVKNEGKTIFIS----SHNLAEIEMIADHIALLHKGNLLYEGNLNSI 219
Cdd:PRK11144 168 LPYLERLAREINIPilyvSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
5-210 |
2.69e-12 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 64.74 E-value: 2.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSF--DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGC 81
Cdd:cd03369 7 IEVENLSVRYapDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPlEDLRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 82 FIDSPTYYPNlTAYENLayvqkminKPLDEIDRVlkitGIYKAkdKKVK----DFSLGMKQRLGISFAILNDPKILILDE 157
Cdd:cd03369 87 IPQDPTLFSG-TIRSNL--------DPFDEYSDE----EIYGA--LRVSegglNLSQGQRQLLCLARALLKRPRVLVLDE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 158 PTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHNLAEIeMIADHIALLHKGNL 210
Cdd:cd03369 152 ATASIDYATDALIQKTIREEFTN--STILTIAHRLRTI-IDYDKILVMDAGEV 201
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-202 |
3.91e-12 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 64.38 E-value: 3.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFD--NQ-----SIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDikEWke 73
Cdd:COG4778 1 MTTLLEVENLSKTFTlhLQggkrlPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDG--GW-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 74 elfenvgcfID----SPTYYPNLTAYEnLAYVQKMinkpLDEIDRV---------LKITGIYKAK-DKKVKD-------- 131
Cdd:COG4778 77 ---------VDlaqaSPREILALRRRT-IGYVSQF----LRVIPRVsaldvvaepLLERGVDREEaRARAREllarlnlp 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 132 ----------FSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKT---IFissHNLAEIEMI 198
Cdd:COG4778 143 erlwdlppatFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEA-KARGTAiigIF---HDEEVREAV 218
|
....
gi 1261268081 199 ADHI 202
Cdd:COG4778 219 ADRV 222
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-61 |
4.16e-12 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 66.30 E-value: 4.16e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTI 61
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
8-213 |
4.54e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 66.20 E-value: 4.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLT-KSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFEN------- 78
Cdd:COG3845 261 ENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSpRERRRLgvayipe 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 ----VGCFidsptyyPNLTAYENLAyvqkminkpLDEIDR-------VLKITGIYKAKDKKVKDF------------SL- 134
Cdd:COG3845 341 drlgRGLV-------PDMSVAENLI---------LGRYRRppfsrggFLDRKAIRAFAEELIEEFdvrtpgpdtparSLs 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 135 -GMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYE 213
Cdd:COG3845 405 gGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLEL-RDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGE 483
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
26-219 |
4.71e-12 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 65.53 E-value: 4.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 26 SVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDN----GTILFNNKDIKEWKE-ELFENVGC-----FID-----SPTYYP 90
Cdd:PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGrvmaEKLEFNGQDLQRISEkERRNLVGAevamiFQDpmtslNPCYTV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 91 NLTAYENLAYVQKMINKPLDE--IDrVLKITGIYKAK---DKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPE 165
Cdd:PRK11022 109 GFQIMEAIKVHQGGNKKTRRQraID-LLNQVGIPDPAsrlDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 166 GVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSI 219
Cdd:PRK11022 188 IQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-222 |
9.39e-12 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 64.04 E-value: 9.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDNQS---------IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIK-- 69
Cdd:PRK15112 1 VETLLEVRNLSKTFRYRTgwfrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 70 --EWKEE----LFEN----------VGCFIDSPTYY-PNLTAYENlayvQKMINKPLDEIDRVLKITGIYKAKdkkvkdF 132
Cdd:PRK15112 81 dySYRSQrirmIFQDpstslnprqrISQILDFPLRLnTDLEPEQR----EKQIIETLRQVGLLPDHASYYPHM------L 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 133 SLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKT-IFISSHnLAEIEMIADHIALLHKGNLL 211
Cdd:PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISyIYVTQH-LGMMKHISDQVLVMHQGEVV 229
|
250
....*....|.
gi 1261268081 212 YEGNLNSIITS 222
Cdd:PRK15112 230 ERGSTADVLAS 240
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
30-214 |
1.35e-11 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 62.26 E-value: 1.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 30 GSLYAFIGPNGAGKTTTMRML-----LGLIpldNGTILFNNKDIKEwkeELFENVGCFIDSPTYYPNLTAYENLAYvqkm 104
Cdd:cd03232 33 GTLTALMGESGAGKTTLLDVLagrktAGVI---TGEILINGRPLDK---NFQRSTGYVEQQDVHSPNLTVREALRF---- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 105 inkpldeidrvlkitgiykakDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVkNEGKT 184
Cdd:cd03232 103 ---------------------SALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA-DSGQA 160
|
170 180 190
....*....|....*....|....*....|...
gi 1261268081 185 IFISSH--NLAEIEMIaDHIALLHK-GNLLYEG 214
Cdd:cd03232 161 ILCTIHqpSASIFEKF-DRLLLLKRgGKTVYFG 192
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
23-221 |
1.54e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 63.03 E-value: 1.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 23 LNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDnGTILFNNKDIKEWK-EELFENVGCFIDSPTYYPNLTAYENLAYV 101
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSaAELARHRAYLSQQQTPPFAMPVFQYLTLH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 102 Q------KMINKPLDEIDRVLKITgiykakDK---KVKDFSLGMKQRLGISFAIL-----NDP--KILILDEPTNGLDPE 165
Cdd:PRK03695 94 QpdktrtEAVASALNEVAEALGLD------DKlgrSVNQLSGGEWQRVRLAAVVLqvwpdINPagQLLLLDEPMNSLDVA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 166 GVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIIT 221
Cdd:PRK03695 168 QQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
22-237 |
2.16e-11 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 64.14 E-value: 2.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 22 DLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkDIKEwkeelfeNVGCFIDSPTYYPNLTAYENLAYV 101
Cdd:PRK13545 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKG-------SAALIAISSGLNGQLTGIENIELK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 102 QKMINKPLDEID----RVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHL 177
Cdd:PRK13545 110 GLMMGLTKEKIKeiipEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 178 vKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS-REYIVHVNDTTATER 237
Cdd:PRK13545 190 -KEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHyDEFLKKYNQMSVEER 249
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
2-190 |
2.48e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 64.20 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 2 KLAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNK-DI---KEWKEELfe 77
Cdd:PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKlEVayfDQHRAEL-- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 nvgcfiDsptyyPNLTAYENLAYVQK--MINKpldeIDR-VLKitgiY--------KAKDKKVKDFSLGMKQRLGISFAI 146
Cdd:PRK11147 395 ------D-----PEKTVMDNLAEGKQevMVNG----RPRhVLG----YlqdflfhpKRAMTPVKALSGGERNRLLLARLF 455
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1261268081 147 LNDPKILILDEPTNGLDPEGVheirRLLLHLVKNEGKTIFISSH 190
Cdd:PRK11147 456 LKPSNLLILDEPTNDLDVETL----ELLEELLDSYQGTVLLVSH 495
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
24-221 |
2.75e-11 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 62.29 E-value: 2.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 24 NLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKD------IKEWKEELF-ENvgcfidspTYYPNLTAYE 96
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDhtttppSRRPVSMLFqEN--------NLFSHLTVAQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 97 NLA----------YVQKminkplDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEG 166
Cdd:PRK10771 91 NIGlglnpglklnAAQR------EKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 167 VHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIIT 221
Cdd:PRK10771 165 RQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
20-210 |
4.45e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 63.31 E-value: 4.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLD-NGTILFNNK--DIKEWKEELFENVGCFIDSPTYY---PNLT 93
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKpvDIRNPAQAIRAGIAMVPEDRKRHgivPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 94 AYEN--LAYVQKM-----IN--KPLDEIDRVLKITGIYKAK-DKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLD 163
Cdd:TIGR02633 356 VGKNitLSVLKSFcfkmrIDaaAELQIIGSAIQRLKVKTASpFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1261268081 164 PEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:TIGR02633 436 VGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
8-190 |
6.22e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 63.01 E-value: 6.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSF--DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLL------GLIPLDNgtILFNNKDIKEWKEElFENV 79
Cdd:TIGR01271 1221 QGLTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLrllsteGEIQIDG--VSWNSVTLQTWRKA-FGVI 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 --GCFIDSPTYYPNLTAYENlaYVQKMINKPLDEIDRVLKITGIYKAKDKKVKD----FSLGMKQRLGISFAILNDPKIL 153
Cdd:TIGR01271 1298 pqKVFIFSGTFRKNLDPYEQ--WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDggyvLSNGHKQLMCLARSILSKAKIL 1375
|
170 180 190
....*....|....*....|....*....|....*..
gi 1261268081 154 ILDEPTNGLDPEGVHEIRRLLLHLVKNegKTIFISSH 190
Cdd:TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSFSN--CTVILSEH 1410
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
8-215 |
6.31e-11 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 61.35 E-value: 6.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGL--IPLDNGTILFNNKDIKEWKEELFENVGCFI-- 83
Cdd:PRK09580 5 KDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELSPEDRAGEGIFMaf 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 DSPTYYPNLTayeNLAYVQKMIN--------KPLDEID---------RVLKITGIYKAKDKKVkDFSLGMKQRLGISFAI 146
Cdd:PRK09580 85 QYPVEIPGVS---NQFFLQTALNavrsyrgqEPLDRFDfqdlmeekiALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 147 LNDPKILILDEPTNGLD-------PEGVHEIRrlllhlvkNEGKTIFISSHNLAEIEMIA-DHIALLHKGNLLYEGN 215
Cdd:PRK09580 161 VLEPELCILDESDSGLDidalkivADGVNSLR--------DGKRSFIIVTHYQRILDYIKpDYVHVLYQGRIVKSGD 229
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
138-227 |
1.00e-10 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 61.74 E-value: 1.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 138 QRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIallhkgNLLYEGNLN 217
Cdd:PRK15093 165 QKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI------NVLYCGQTV 238
|
90
....*....|
gi 1261268081 218 SIITSREYIV 227
Cdd:PRK15093 239 ETAPSKELVT 248
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
6-213 |
1.11e-10 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 60.86 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 6 QTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE----------- 74
Cdd:PRK10419 14 AHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAqrkafrrdiqm 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 75 LFEN----------VGCFIDSPT-YYPNLTAYENLAYVQKMinkpLDEIDRVLKITgiykakDKKVKDFSLGMKQRLGIS 143
Cdd:PRK10419 94 VFQDsisavnprktVREIIREPLrHLLSLDKAERLARASEM----LRAVDLDDSVL------DKRPPQLSGGQLQRVCLA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 144 FAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYE 213
Cdd:PRK10419 164 RALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
36-224 |
1.38e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 61.89 E-value: 1.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 36 IGPNGAGKTTTMRMLLGLIPLDNGTILFNnKDI----------KEWKEELFENVGCFIDSPTYYpnLTAYENLA------ 99
Cdd:PRK11147 35 VGRNGAGKSTLMKILNGEVLLDDGRIIYE-QDLivarlqqdppRNVEGTVYDFVAEGIEEQAEY--LKRYHDIShlvetd 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 100 YVQKMINK------PLD---------EIDRVLKITGIykAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDP 164
Cdd:PRK11147 112 PSEKNLNElaklqeQLDhhnlwqlenRINEVLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDI 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 165 EGVHEIRRLLLHLvknEGKTIFIsSHNLAEIEMIADHIALLHKGNLL-YEGNLNSIITSRE 224
Cdd:PRK11147 190 ETIEWLEGFLKTF---QGSIIFI-SHDRSFIRNMATRIVDLDRGKLVsYPGNYDQYLLEKE 246
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
24-203 |
1.82e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 61.36 E-value: 1.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 24 NLSVP-EGSLYAFIGPNGAGKTTTMRMLLG-LIPldNgtiLFNNKDIKEWKE--------ELFenvgcfidspTYYPNLt 93
Cdd:PRK13409 92 GLPIPkEGKVTGILGPNGIGKTTAVKILSGeLIP--N---LGDYEEEPSWDEvlkrfrgtELQ----------NYFKKL- 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 94 aYEN-LAYVQK-----MINKPL-----------DE---IDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:PRK13409 156 -YNGeIKVVHKpqyvdLIPKVFkgkvrellkkvDErgkLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 154 ILDEPTNGLDpegVHE-------IRRLLlhlvknEGKTIFISSHNLAEIEMIAD--HIA 203
Cdd:PRK13409 235 FFDEPTSYLD---IRQrlnvarlIRELA------EGKYVLVVEHDLAVLDYLADnvHIA 284
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
1-224 |
1.88e-10 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 60.21 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFdnqSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkdikewkeELFENVG 80
Cdd:PRK13546 24 MKDALIPKHKNKTF---FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV------------DRNGEVS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 CFIDSPTYYPNLTAYEN-------LAYVQKMINKPLDEIdrvLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:PRK13546 89 VIAISAGLSGQLTGIENiefkmlcMGFKRKEIKAMTPKI---IEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDIL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 154 ILDEPTNGLDPEGVHEIRRlLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITSRE 224
Cdd:PRK13546 166 VIDEALSVGDQTFAQKCLD-KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYE 235
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
5-210 |
2.05e-10 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 61.14 E-value: 2.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSI-VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE--------L 75
Cdd:PRK10522 323 LELRNVTFAYQDNGFsVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEdyrklfsaV 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVGCF---IDSPTYYPNLTAYENLAYVQKMINKPLDEIDRVLKItgiykakdkkvkDFSLGMKQRLGISFAILNDPKI 152
Cdd:PRK10522 403 FTDFHLFdqlLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNL------------KLSKGQKKRLALLLALAEERDI 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 153 LILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMiADHIALLHKGNL 210
Cdd:PRK10522 471 LLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH-ADRLLEMRNGQL 527
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
20-210 |
2.38e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.79 E-value: 2.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGCFID------------SP 86
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSpQDGLANGIVYISedrkrdglvlgmSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 87 TYYPNLTAYENLAYVQKMINKPlDEIDRVLKITGIYKAK----DKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGL 162
Cdd:PRK10762 348 KENMSLTALRYFSRAGGSLKHA-DEQQAVSDFIRLFNIKtpsmEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1261268081 163 DPEGVHEIRRlLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNL 210
Cdd:PRK10762 427 DVGAKKEIYQ-LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
57-196 |
2.95e-10 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 61.20 E-value: 2.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 57 DNGTILFNNKDIKEWKEELFENVGCFIDSPTYYPNLTAYENLAYVQKmiNKPLDEIDRVLKITGIYK-------AKDKKV 129
Cdd:PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEfieslpnKYDTNV 1352
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 130 ----KDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIE 196
Cdd:PTZ00265 1353 gpygKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK 1423
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
3-215 |
3.08e-10 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 60.50 E-value: 3.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI-----KEWKEELFe 77
Cdd:PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLtklqlDSWRSRLA- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 nvgcfIDSPTyyPNL---TAYENLAyvqkmINKP---LDEIDRVLKITGIY-------KAKDKKVKD----FSLGMKQRL 140
Cdd:PRK10789 393 -----VVSQT--PFLfsdTVANNIA-----LGRPdatQQEIEHVARLASVHddilrlpQGYDTEVGErgvmLSGGQKQRI 460
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1261268081 141 GISFAILNDPKILILDEPTNGLDPEGVHEIrrllLHLVKN--EGKTIFISSHNLAEIEMiADHIALLHKGNLLYEGN 215
Cdd:PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQI----LHNLRQwgEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGN 532
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
24-206 |
4.55e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 60.18 E-value: 4.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 24 NLSVP-EGSLYAFIGPNGAGKTTTMRMLLG-LIP----LDN------------GTILFN------NKDIK-EWKEELFEN 78
Cdd:COG1245 92 GLPVPkKGKVTGILGPNGIGKSTALKILSGeLKPnlgdYDEepswdevlkrfrGTELQDyfkklaNGEIKvAHKPQYVDL 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 79 VGCFIDSptyypnlTAYENLAYV-QKMInkpLDEIDRVLKITGIYkakDKKVKDFSLGMKQRLGISFAILNDPKILILDE 157
Cdd:COG1245 172 IPKVFKG-------TVRELLEKVdERGK---LDELAEKLGLENIL---DRDISELSGGELQRVAIAAALLRDADFYFFDE 238
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 158 PTNGLDpegVHE-------IRRLLlhlvkNEGKTIFISSHNLAEIEMIADHIALLH 206
Cdd:COG1245 239 PSSYLD---IYQrlnvarlIRELA-----EEGKYVLVVEHDLAILDYLADYVHILY 286
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
5-191 |
7.52e-10 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 57.87 E-value: 7.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSF---DNQ-SIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE-----L 75
Cdd:PRK10584 7 VEVHHLKKSVgqgEHElSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEaraklR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVGCFIDSPTYYPNLTAYENlayVQ-------KMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILN 148
Cdd:PRK10584 87 AKHVGFVFQSFMLIPTLNALEN---VElpallrgESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1261268081 149 DPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHN 191
Cdd:PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
19-210 |
9.52e-10 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 59.17 E-value: 9.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 19 IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIP-LDNGTILFNNKDIK-EWKEELFENVGCFI--DSPTY--YPNL 92
Cdd:PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVKiRNPQQAIAQGIAMVpeDRKRDgiVPVM 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 93 TAYEN--LAYVQKMINKPLdeIDRVLKITGIYKAKDK-KVKDFSL---------GMKQRLGISFAILNDPKILILDEPTN 160
Cdd:PRK13549 357 GVGKNitLAALDRFTGGSR--IDDAAELKTILESIQRlKVKTASPelaiarlsgGNQQKAVLAKCLLLNPKILILDEPTR 434
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1261268081 161 GLDPEGVHEIRRLLLHLVKNEGKTIFISSHnLAEIEMIADHIALLHKGNL 210
Cdd:PRK13549 435 GIDVGAKYEIYKLINQLVQQGVAIIVISSE-LPEVLGLSDRVLVMHEGKL 483
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
5-190 |
1.24e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 58.87 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTtmrmLLGLIPLD------NGTILFNNK--------DIKE 70
Cdd:PRK10938 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKST----LLSLITGDhpqgysNDLTLFGRRrgsgetiwDIKK 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 71 W------KEELFENVGC---------FIDSptyypnLTAYENLAYVQKMInkpldeIDRVLKITGIYKAK-DKKVKDFSL 134
Cdd:PRK10938 337 HigyvssSLHLDYRVSTsvrnvilsgFFDS------IGIYQAVSDRQQKL------AQQWLDILGIDKRTaDAPFHSLSW 404
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 135 GmKQRLG-ISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVkNEGKT--IFISSH 190
Cdd:PRK10938 405 G-QQRLAlIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLI-SEGETqlLFVSHH 461
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
10-222 |
1.27e-09 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 58.95 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 10 LTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPlDNGTILFNNKDIKEWKEE-----------LFE- 77
Cdd:PRK15134 292 LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRqllpvrhriqvVFQd 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 ---------NVGCFIDS--PTYYPNLTAYENLAYV-QKMINKPLDEIDRVLkitgiYKAkdkkvkDFSLGMKQRLGISFA 145
Cdd:PRK15134 371 pnsslnprlNVLQIIEEglRVHQPTLSAAQREQQViAVMEEVGLDPETRHR-----YPA------EFSGGQRQRIAIARA 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 146 ILNDPKILILDEPTNGLDPEGVHEIRRLLLHL-VKNEGKTIFIsSHNLAEIEMIADHIALLHKGNLLYEGNLNSIITS 222
Cdd:PRK15134 440 LILKPSLIILDEPTSSLDKTVQAQILALLKSLqQKHQLAYLFI-SHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1-219 |
1.55e-09 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 57.40 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSFDnQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIP----LDNGTILFNNKDIKewKEELF 76
Cdd:PRK10418 1 MPQQIELRNIALQAA-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPagvrQTAGRVLLDGKPVA--PCALR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 -ENVGCFIDSP--TYYPNLT----AYENLAYVQKMINKP----------LDEIDRVLKITGIykakdkkvkDFSLGMKQR 139
Cdd:PRK10418 78 gRKIATIMQNPrsAFNPLHTmhthARETCLALGKPADDAtltaaleavgLENAARVLKLYPF---------EMSGGMLQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 140 LGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGNLNSI 219
Cdd:PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
5-214 |
2.07e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 58.58 E-value: 2.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDnqsIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLG-----LIPLDnGTILFNNKDIKEWKEELFENV 79
Cdd:TIGR00956 65 LKKFRDTKTFD---ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASntdgfHIGVE-GVITYDGITPEEIKKHYRGDV 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 GCFIDSPTYYPNLTAYENLAYVQKM---INKP--LDEIDRVLKITGIYKA-------KDKKV-KDF----SLGMKQRLGI 142
Cdd:TIGR00956 141 VYNAETDVHFPHLTVGETLDFAARCktpQNRPdgVSREEYAKHIADVYMAtyglshtRNTKVgNDFvrgvSGGERKRVSI 220
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1261268081 143 SFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAE-IEMIADHIALLHKGNLLYEG 214
Cdd:TIGR00956 221 AEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQdAYELFDKVIVLYEGYQIYFG 293
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
8-218 |
2.69e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 57.64 E-value: 2.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFD-NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNnKDIKewkeelfenVGCFIDSP 86
Cdd:TIGR03719 8 NRVSKVVPpKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQ-PGIK---------VGYLPQEP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 87 TYYPNLTAYEN----LAYVQKMINK----------PLDEIDRVLKITGIYKAK-------------------------DK 127
Cdd:TIGR03719 78 QLDPTKTVRENveegVAEIKDALDRfneisakyaePDADFDKLAAEQAELQEIidaadawdldsqleiamdalrcppwDA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 128 KVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRlllHLVKNEGkTIFISSHNLAEIEMIADHIALLHK 207
Cdd:TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLER---HLQEYPG-TVVAVTHDRYFLDNVAGWILELDR 233
|
250
....*....|..
gi 1261268081 208 GNLL-YEGNLNS 218
Cdd:TIGR03719 234 GRGIpWEGNYSS 245
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
25-206 |
5.69e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 55.84 E-value: 5.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 25 LSVP-EGSLYAFIGPNGAGKTTTMRMLLGlipldngtilfnnkdikewkeELFENVGCFIDSPTYYPNLTAYENLA---Y 100
Cdd:cd03236 20 LPVPrEGQVLGLVGPNGIGKSTALKILAG---------------------KLKPNLGKFDDPPDWDEILDEFRGSElqnY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 101 VQKMIN-------KP--LDEI---------------------DRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDP 150
Cdd:cd03236 79 FTKLLEgdvkvivKPqyVDLIpkavkgkvgellkkkdergklDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 151 KILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLH 206
Cdd:cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
5-224 |
6.81e-09 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 56.79 E-value: 6.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRML----LGLIPL-------------DNGTIL--FNN 65
Cdd:PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMamhaIDGIPKncqilhveqevvgDDTTALqcVLN 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 66 KDIkEWKEELFENVGCF-----IDSPTYYPNLTAYENLAYVQKMINKPLDEIDRVLKITGIYKAKD-------------- 126
Cdd:PLN03073 258 TDI-ERTQLLEEEAQLVaqqreLEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEAraasilaglsftpe 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 127 ---KKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDpegVHEIRRLLLHLVKNEgKTIFISSHNLAEIEMIADHIA 203
Cdd:PLN03073 337 mqvKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD---LHAVLWLETYLLKWP-KTFIVVSHAREFLNTVVTDIL 412
|
250 260
....*....|....*....|..
gi 1261268081 204 LLHKGNLL-YEGNLNSIITSRE 224
Cdd:PLN03073 413 HLHGQKLVtYKGDYDTFERTRE 434
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-211 |
7.36e-09 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 56.66 E-value: 7.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 1 MKLAIQTKNLTKSF----DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELF 76
Cdd:PRK10535 1 MTALLELKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 77 -----ENVGCFIDSPTYYPNLTAYENL----AYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAIL 147
Cdd:PRK10535 81 aqlrrEHFGFIFQRYHLLSHLTAAQNVevpaVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 148 NDPKILILDEPTNGLDPEGVHEIRRlLLHLVKNEGKTIFISSHNlAEIEMIADHIALLHKGNLL 211
Cdd:PRK10535 161 NGGQVILADEPTGALDSHSGEEVMA-ILHQLRDRGHTVIIVTHD-PQVAAQAERVIEIRDGEIV 222
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
6-208 |
8.78e-09 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 55.32 E-value: 8.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 6 QTKNLTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDiKEWKE--ELFE------ 77
Cdd:PRK11701 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD-GQLRDlyALSEaerrrl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 ------------------------NVG--CFIDSPTYYPNL--TAYENLAYVqkminkpldEID--RVlkitgiykakDK 127
Cdd:PRK11701 87 lrtewgfvhqhprdglrmqvsaggNIGerLMAVGARHYGDIraTAGDWLERV---------EIDaaRI----------DD 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 128 KVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHK 207
Cdd:PRK11701 148 LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQ 227
|
.
gi 1261268081 208 G 208
Cdd:PRK11701 228 G 228
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
30-203 |
9.84e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.15 E-value: 9.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 30 GSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNkdikewkeelfenvgcfidsptyypnltayenlayvqkminkpL 109
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID-------------------------------------------G 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 110 DEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIR-----RLLLHLVKNEGKT 184
Cdd:smart00382 39 EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLlleelRLLLLLKSEKNLT 118
|
170 180
....*....|....*....|
gi 1261268081 185 IFISSHNLAE-IEMIADHIA 203
Cdd:smart00382 119 VILTTNDEKDlGPALLRRRF 138
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
4-224 |
1.48e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 55.75 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFDNQS---IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIP-------LDNGTILFNNKDIKEWKE 73
Cdd:PLN03232 614 AISIKNGYFSWDSKTskpTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELShaetssvVIRGSVAYVPQVSWIFNA 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 74 ELFENV--GCFIDSPTYYPNLTAYENLAYVQKMINKPLDEI-DRVLKITGiykakdkkvkdfslGMKQRLGISFAILNDP 150
Cdd:PLN03232 694 TVRENIlfGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIgERGVNISG--------------GQKQRVSMARAVYSNS 759
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1261268081 151 KILILDEPTNGLDpegVHEIRRLLLHLVKNE--GKTIFISSHNLAEIEMIaDHIALLHKGNLLYEGNLNSIITSRE 224
Cdd:PLN03232 760 DIYIFDDPLSALD---AHVAHQVFDSCMKDElkGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELSKSGS 831
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
3-219 |
3.29e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 54.48 E-value: 3.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 3 LAIQTKNLTKSFDNQSI--VRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFE--- 77
Cdd:PRK10261 13 LAVENLNIAFMQEQQKIaaVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIElse 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 78 ------------NVGCFIDSP--TYYPNLTAYENLAYVQKM-----INKPLDEIDRVLKITGIYKAK---DKKVKDFSLG 135
Cdd:PRK10261 93 qsaaqmrhvrgaDMAMIFQEPmtSLNPVFTVGEQIAESIRLhqgasREEAMVEAKRMLDQVRIPEAQtilSRYPHQLSGG 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 136 MKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFISSHNLAEIEMIADHIALLHKGNLLYEGN 215
Cdd:PRK10261 173 MRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
....
gi 1261268081 216 LNSI 219
Cdd:PRK10261 253 VEQI 256
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
16-190 |
3.96e-08 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 54.37 E-value: 3.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 16 NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkdIKEWKEELFenvgcFIDSPTYYPNLTAY 95
Cdd:TIGR00954 464 GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRL------TKPAKGKLF-----YVPQRPYMTLGTLR 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 96 ENLAY---VQKMI-----NKPLDEIDRVLKITGIYKAKD--KKVKDF----SLGMKQRLGISFAILNDPKILILDEPTNG 161
Cdd:TIGR00954 533 DQIIYpdsSEDMKrrglsDKDLEQILDNVQLTHILEREGgwSAVQDWmdvlSGGEKQRIAMARLFYHKPQFAILDECTSA 612
|
170 180
....*....|....*....|....*....
gi 1261268081 162 LDPegvhEIRRLLLHLVKNEGKTIFISSH 190
Cdd:TIGR00954 613 VSV----DVEGYMYRLCREFGITLFSVSH 637
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
5-229 |
9.01e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 53.19 E-value: 9.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSfdNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWK-EELFENVGCFI 83
Cdd:PRK10982 251 LEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNaNEAINHGFALV 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 84 DSPTYYPNLTAYENLAYvqkmiNKPLDEIDRVLKITGIYKAKDKK-----------VK---------DFSLGMKQRLGIS 143
Cdd:PRK10982 329 TEERRSTGIYAYLDIGF-----NSLISNIRNYKNKVGLLDNSRMKsdtqwvidsmrVKtpghrtqigSLSGGNQQKVIIG 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 144 FAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKGNLlyEGNLNSIITSR 223
Cdd:PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPELLGITDRILVMSNGLV--AGIVDTKTTTQ 480
|
....*.
gi 1261268081 224 EYIVHV 229
Cdd:PRK10982 481 NEILRL 486
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
16-190 |
9.80e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 51.41 E-value: 9.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 16 NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDI----KEWKEELFENVGCFIDsptyypn 91
Cdd:PRK13541 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNInniaKPYCTYIGHNLGLKLE------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 92 LTAYENLAYVQKMINKpLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGvheiR 171
Cdd:PRK13541 85 MTVFENLKFWSEIYNS-AETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN----R 159
|
170 180
....*....|....*....|..
gi 1261268081 172 RLLLHLV---KNEGKTIFISSH 190
Cdd:PRK13541 160 DLLNNLIvmkANSGGIVLLSSH 181
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
30-216 |
1.29e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 52.80 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 30 GSLYAFIGPNGAGKTTTM-----RMLLGLIplDNGTILFNNKDIkewkEELFE-NVGCFIDSPTYYPNLTAYENL---AY 100
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLnvlaeRVTTGVI--TGGDRLVNGRPL----DSSFQrSIGYVQQQDLHLPTSTVRESLrfsAY 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 101 VQKMINKPLDE----IDRVLKITGIYKAKDKKVKDFSLGM----KQRLGISFAILNDPKILI-LDEPTNGLDPEGVHEIR 171
Cdd:TIGR00956 863 LRQPKSVSKSEkmeyVEEVIKLLEMESYADAVVGVPGEGLnveqRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSIC 942
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1261268081 172 RLLLHLVKNeGKTIFISSHNLAEIEMIA-DHIALLHKG-NLLYEGNL 216
Cdd:TIGR00956 943 KLMRKLADH-GQAILCTIHQPSAILFEEfDRLLLLQKGgQTVYFGDL 988
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
132-200 |
1.69e-07 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 51.89 E-value: 1.69e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 132 FSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKT-IFIsSHNLAEIEMIAD 200
Cdd:PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSyVFI-SHDLSVVEHIAD 223
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
15-216 |
2.02e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 52.54 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 15 DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGlipldNGTILFNNKDIK----EWKEELFENVGCFID-SPTYY 89
Cdd:PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG-----RKTGGYIEGDIRisgfPKKQETFARISGYCEqNDIHS 965
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 90 PNLTAYENLAY-----VQKMINK--PLDEIDRVLKITGIYKAKDK-----KVKDFSLGMKQRLGISFAILNDPKILILDE 157
Cdd:PLN03140 966 PQVTVRESLIYsaflrLPKEVSKeeKMMFVDEVMELVELDNLKDAivglpGVTGLSTEQRKRLTIAVELVANPSIIFMDE 1045
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 158 PTNGLDPEGVHEIRRLLLHLVkNEGKTIFISSHNLA-EIEMIADHIALLHK-GNLLYEGNL 216
Cdd:PLN03140 1046 PTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSiDIFEAFDELLLMKRgGQVIYSGPL 1105
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
92-196 |
2.65e-07 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 51.24 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 92 LTAYENLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVK----DFSLGMKQRLGISFAILNDPK---ILILDEPTNGLDP 164
Cdd:pfam13304 193 KLADLNLSDLGEGIEKSLLVDDRLRERGLILLENGGGGElpafELSDGTKRLLALLAALLSALPkggLLLIDEPESGLHP 272
|
90 100 110
....*....|....*....|....*....|..
gi 1261268081 165 EGVHEIRRLLLHLVKNEGKtIFISSHNLAEIE 196
Cdd:pfam13304 273 KLLRRLLELLKELSRNGAQ-LILTTHSPLLLD 303
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
5-192 |
2.67e-07 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 51.01 E-value: 2.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLTKSF--DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGT----ILFNNKDIKEWKEE---L 75
Cdd:cd03289 3 MTVKDLTAKYteGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIqidgVSWNSVPLQKWRKAfgvI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENVgcFIDSPTYYPNLTAYENlaYVQKMINKPLDEIDRVLKITGIYKAKDKKVKD----FSLGMKQRLGISFAILNDPK 151
Cdd:cd03289 83 PQKV--FIFSGTFRKNLDPYGK--WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDggcvLSHGHKQLMCLARSVLSKAK 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1261268081 152 ILILDEPTNGLDPEGVHEIRRLLLHLVKneGKTIFISSHNL 192
Cdd:cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFA--DCTVILSEHRI 197
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
5-216 |
3.42e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 50.74 E-value: 3.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 5 IQTKNLtKSFDNQSI-VRDLNLsvpegslyaFIGPNGAGKTTTMRMLLGL-----------------IPLDNGTILFNNK 66
Cdd:COG4938 4 ISIKNF-GPFKEAELeLKPLTL---------LIGPNGSGKSTLIQALLLLlqsnfiylpaersgparLYPSLVRELSDLG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 67 DIKEWKEELFENVGcFIDSPTYYPNLTAYENLAYVQKMInKPLDEIDRVLKITGIYKAKDKKVKDFSL-----GMKQRLG 141
Cdd:COG4938 74 SRGEYTADFLAELE-NLEILDDKSKELLEQVEEWLEKIF-PGKVEVDASSDLVRLVFRPSGNGKRIPLsnvgsGVSELLP 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 142 ISFAILNDPK---ILILDEPTNGLDPEGVHEIRRLLLHLVkNEGKTIFISSHnlaeiemiADHIaLLHKGNLLYEGNL 216
Cdd:COG4938 152 ILLALLSAAKpgsLLIIEEPEAHLHPKAQSALAELLAELA-NSGVQVIIETH--------SDYI-LNGLRNLIKEGKL 219
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
19-214 |
4.99e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 51.32 E-value: 4.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 19 IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIlfnnkdikeWKEELFENV--GCFIDSPTYYPNLTAY- 95
Cdd:PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV---------WAERSIAYVpqQAWIMNATVRGNILFFd 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 96 -ENLAYVQKMINKPLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPE-GVHEIRRL 173
Cdd:PTZ00243 746 eEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHvGERVVEEC 825
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1261268081 174 LL-HLvknEGKTIFISSHNLaEIEMIADHIALLHKGNLLYEG 214
Cdd:PTZ00243 826 FLgAL---AGKTRVLATHQV-HVVPRADYVVALGDGRVEFSG 863
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
4-210 |
8.41e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 50.33 E-value: 8.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSF--DNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNK----DIKEW--KEEL 75
Cdd:TIGR00957 636 SITVHNATFTWarDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSvayvPQQAWiqNDSL 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 76 FENV--GCFIDSPTYYPNLTAYENLAYVQKMINKPLDEIdrvlkitgiykakDKKVKDFSLGMKQRLGISFAILNDPKIL 153
Cdd:TIGR00957 716 RENIlfGKALNEKYYQQVLEACALLPDLEILPSGDRTEI-------------GEKGVNLSGGQKQRVSLARAVYSNADIY 782
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 154 ILDEPTNGLDpegVHEIRRLLLHLVKNEG----KTIFISSHNLAEIEMIaDHIALLHKGNL 210
Cdd:TIGR00957 783 LFDDPLSAVD---AHVGKHIFEHVIGPEGvlknKTRILVTHGISYLPQV-DVIIVMSGGKI 839
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
4-222 |
9.28e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 50.12 E-value: 9.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 4 AIQTKNLTKSFD---NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLG-LIPLDNGTILFN-------------NK 66
Cdd:PLN03130 614 AISIKNGYFSWDskaERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGeLPPRSDASVVIRgtvayvpqvswifNA 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 67 DIKEwkEELFenvGCFIDSPTYYPNLTAYENLAYVQKMINKPLDEI-DRVLKITGiykakdkkvkdfslGMKQRLGISFA 145
Cdd:PLN03130 694 TVRD--NILF---GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIgERGVNISG--------------GQKQRVSMARA 754
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 146 ILNDPKILILDEPTNGLDpegVHEIRRLLLHLVKNE--GKTIFISSHNLAEIEMIaDHIALLHKGNLLYEGNLNSIITS 222
Cdd:PLN03130 755 VYSNSDVYIFDDPLSALD---AHVGRQVFDKCIKDElrGKTRVLVTNQLHFLSQV-DRIILVHEGMIKEEGTYEELSNN 829
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
36-218 |
1.21e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.78 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 36 IGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEE--------LFENVgcfIDSPTYYPNLTAYENLAYVQK---- 103
Cdd:PRK10636 33 VGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQetpalpqpALEYV---IDGDREYRQLEAQLHDANERNdgha 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 104 --MINKPLDEID---------RVLKITGIYKAK-DKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIR 171
Cdd:PRK10636 110 iaTIHGKLDAIDawtirsraaSLLHGLGFSNEQlERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLE 189
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1261268081 172 RLLlhlvKNEGKTIFISSHNLAEIEMIADHIALLHKGNLL-YEGNLNS 218
Cdd:PRK10636 190 KWL----KSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFeYTGNYSS 233
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
23-216 |
1.99e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.01 E-value: 1.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 23 LNLsVPeGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNnKDIKewkeelfenVGCFIDSPTYYpnLTAYEnlAYVQ 102
Cdd:PRK10636 333 LNL-VP-GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA-KGIK---------LGYFAQHQLEF--LRADE--SPLQ 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 103 KMINKPLDEIDRVLK-ITGIYKAKDKKVKD----FSLGMKQRLGISFAILNDPKILILDEPTNGLDpegvHEIRRLLLH- 176
Cdd:PRK10636 397 HLARLAPQELEQKLRdYLGGFGFQGDKVTEetrrFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD----LDMRQALTEa 472
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1261268081 177 LVKNEGKTIFIsSHNLAEIEMIADHIALLHKGNL-LYEGNL 216
Cdd:PRK10636 473 LIDFEGALVVV-SHDRHLLRSTTDDLYLVHDGKVePFDGDL 512
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
24-205 |
8.34e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 46.93 E-value: 8.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 24 NLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNG-----------------------TILFNNKDIKEWKEELFenvg 80
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGerqsqfshitrlsfeqlqklvsdEWQRNNTDMLSPGEDDT---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 81 cfidsptyypNLTAYEnlaYVQKMINKPlDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTN 160
Cdd:PRK10938 99 ----------GRTTAE---IIQDEVKDP-ARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFD 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1261268081 161 GLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALL 205
Cdd:PRK10938 165 GLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVL 208
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
19-211 |
1.33e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 46.51 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 19 IVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIKEWKEELFENVGCFI-DSPTYYP-----NL 92
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIpQSPVLFSgtvrfNI 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 93 TAY--ENLAYVQKMINKP--LDEIDRvlKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPegvh 168
Cdd:PLN03232 1331 DPFseHNDADLWEALERAhiKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDV---- 1404
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1261268081 169 EIRRLLLHLVKNEGK--TIFISSHNLAEIeMIADHIALLHKGNLL 211
Cdd:PLN03232 1405 RTDSLIQRTIREEFKscTMLVIAHRLNTI-IDCDKILVLSSGQVL 1448
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
135-215 |
1.92e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 46.04 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 135 GMKQRLGISFAILNDPKILILDEPTNGLDpegVHEIRrlLLHLVKNEGK-TIFISSHNLAEIEMIADHIALLHKGNL-LY 212
Cdd:PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLD---INTIR--WLEDVLNERNsTMIIISHDRHFLNSVCTHMADLDYGELrVY 233
|
...
gi 1261268081 213 EGN 215
Cdd:PRK15064 234 PGN 236
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
133-273 |
2.80e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 45.59 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 133 SLGMKQRLGISFAILN---DPKILILDEPTNGLDPEGVHEIRRLLLHLVkNEGKTIFISSHNLaEIEMIADHIALL--HK 207
Cdd:PRK00635 811 SGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLT-HQGHTVVIIEHNM-HVVKVADYVLELgpEG 888
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 208 GNLlyEGNLNSIITSREYIvHVNDTTATE---RILNTEDIPYSIEKEgvfklmidQNSvPNLTRILIKN 273
Cdd:PRK00635 889 GNL--GGYLLASCSPEELI-HLHTPTAKAlrpYLSSPQELPYLPDPS--------PKP-PVPADITIKN 945
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
24-208 |
2.84e-05 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 45.29 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 24 NLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIPLDNGTILFNNKDIK-----------------EWKEE-------LFENV 79
Cdd:PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDirsprdairagimlcpeDRKAEgiipvhsVADNI 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 80 -----------GCFIDSPTYypnltayENLA--YVQKM-INKPldeidrvlkitgiykAKDKKVKDFSLGMKQRlgisfA 145
Cdd:PRK11288 353 nisarrhhlraGCLINNRWE-------AENAdrFIRSLnIKTP---------------SREQLIMNLSGGNQQK-----A 405
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1261268081 146 ILN-----DPKILILDEPTNGLDPEGVHEIRRLLLHLVKnEGKTIFISSHNLAEIEMIADHIALLHKG 208
Cdd:PRK11288 406 ILGrwlseDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMREG 472
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
113-221 |
3.43e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 45.22 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 113 DRVLKITGIYKAKDKKVKD-----FSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGKTIFI 187
Cdd:PLN03140 313 DYTLKILGLDICKDTIVGDemirgISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM 392
|
90 100 110
....*....|....*....|....*....|....*
gi 1261268081 188 SSHNLA-EIEMIADHIALLHKGNLLYEGNLNSIIT 221
Cdd:PLN03140 393 SLLQPApETFDLFDDIILLSEGQIVYQGPRDHILE 427
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
8-215 |
3.96e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 44.72 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 8 KNLTKSFD-NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGL--------IPLDNGTI--------LFNNKDIKE 70
Cdd:PRK11819 10 NRVSKVVPpKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVdkefegeaRPAPGIKVgylpqepqLDPEKTVRE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 71 WKEE----------LFENVGCFIDSPTYYPNLTAYEnLAYVQKMI-NKPLDEIDRVLKItgiykA--------KDKKVKD 131
Cdd:PRK11819 90 NVEEgvaevkaaldRFNEIYAAYAEPDADFDALAAE-QGELQEIIdAADAWDLDSQLEI-----AmdalrcppWDAKVTK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 132 FSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRlllHLVKNEGkTIFISSHNLAEIEMIADHIALLHKGNLL 211
Cdd:PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ---FLHDYPG-TVVAVTHDRYFLDNVAGWILELDRGRGI 239
|
....*
gi 1261268081 212 -YEGN 215
Cdd:PRK11819 240 pWEGN 244
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
18-203 |
4.29e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 43.12 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 18 SIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLlGLIPLDNGTILFNNKDIKewkeelfenVGCFidsptyypnltayen 97
Cdd:cd03227 9 SYFVPNDVTFGEGSLTIITGPNGSGKSTILDAI-GLALGGAQSATRRRSGVK---------AGCI--------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 98 layvqkminKPLDEIDRVLKITGIykakdkkvkdfSLGMKQRLGISFAI----LNDPKILILDEPTNGLDPEGVHEIRRL 173
Cdd:cd03227 64 ---------VAAVSAELIFTRLQL-----------SGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALAEA 123
|
170 180 190
....*....|....*....|....*....|
gi 1261268081 174 LLHLVKNEGKTIFIsSHNLaEIEMIADHIA 203
Cdd:cd03227 124 ILEHLVKGAQVIVI-THLP-ELAELADKLI 151
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
152-214 |
1.51e-04 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 42.24 E-value: 1.51e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1261268081 152 ILILDEPTNGLDPEGVHEIRRLLLHLvKNEGKTIFISSHNLAEIeMIADHI------ALLHKGNLLYEG 214
Cdd:cd03270 160 LYVLDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEHDEDTI-RAADHVidigpgAGVHGGEIVAQG 226
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
154-202 |
1.58e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 43.14 E-value: 1.58e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 154 ILDEPTNGLDpegVHEIRRLL--LH-LVKNeGKTIFISSHNLaeiEMI--ADHI 202
Cdd:PRK00349 856 ILDEPTTGLH---FEDIRKLLevLHrLVDK-GNTVVVIEHNL---DVIktADWI 902
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
32-202 |
4.26e-04 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 40.67 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 32 LYAFIGPNGAGKTTTMRMLL----GLIPLDNGTILFNNKDIKEwKEELFENVGCFIDSP----TYYPNLTAYENLAYV-Q 102
Cdd:cd03240 24 LTLIVGQNGAGKTTIIEALKyaltGELPPNSKGGAHDPKLIRE-GEVRAQVKLAFENANgkkyTITRSLAILENVIFChQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 103 KMINKPL-DEIDRVlkiTGIYKAKdkkvkdFSLGMkqRLGISFAILNDPKILILDEPTNGLDPEgvhEIRRLLLHLVKN- 180
Cdd:cd03240 103 GESNWPLlDMRGRC---SGGEKVL------ASLII--RLALAETFGSNCGILALDEPTTNLDEE---NIEESLAEIIEEr 168
|
170 180
....*....|....*....|....*
gi 1261268081 181 EGKTIF---ISSHNlAEIEMIADHI 202
Cdd:cd03240 169 KSQKNFqliVITHD-EELVDAADHI 192
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
10-55 |
4.89e-04 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 40.97 E-value: 4.89e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1261268081 10 LTKSFDNQSIVRDLNLSVPEGSLYAFIGPNGAGKTTTMRMLLGLIP 55
Cdd:PRK13547 7 LHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT 52
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
154-202 |
6.85e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 41.17 E-value: 6.85e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1261268081 154 ILDEPTNGLDPegvHEIRRLL--LH-LVkNEGKTIFISSHNLaeiEMI--ADHI 202
Cdd:COG0178 852 ILDEPTTGLHF---HDIRKLLevLHrLV-DKGNTVVVIEHNL---DVIktADWI 898
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
16-202 |
8.48e-04 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 39.61 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 16 NQSIVRDLNLSVPEGSLYAFIGPNGAGKTTtmrmllglipldngtilFNNKDIKEWKEELFENvgcfiDSPTYYPNLTAY 95
Cdd:cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKST-----------------LVNEGLYASGKARLIS-----FLPKFSRNKLIF 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 96 enlayvqkminkpLDEIDRVLKITGIYKAKDKKVKDFSLGMKQRLGISFAILNDPK--ILILDEPTNGLDPEG----VHE 169
Cdd:cd03238 65 -------------IDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDinqlLEV 131
|
170 180 190
....*....|....*....|....*....|...
gi 1261268081 170 IRRLLlhlvkNEGKTIFISSHNLAEIEMiADHI 202
Cdd:cd03238 132 IKGLI-----DLGNTVILIEHNLDVLSS-ADWI 158
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
126-208 |
1.02e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 40.54 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 126 DKKVKDFSLGMKQRLGISFAILNDPKILILDEPTNGLDPEGVHEIRRLLLHLVkNEGKT-IFISSHnLAEIEMIADHIAL 204
Cdd:NF040905 399 FQKVGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELA-AEGKGvIVISSE-LPELLGMCDRIYV 476
|
....
gi 1261268081 205 LHKG 208
Cdd:NF040905 477 MNEG 480
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
133-202 |
1.39e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 40.38 E-value: 1.39e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 133 SLGMKQRLGISFAIL---NDPKILILDEPTNGLDpegVHEIRRLL--LHLVKNEGKTIFISSHNLAEIEmIADHI 202
Cdd:TIGR00630 831 SGGEAQRIKLAKELSkrsTGRTLYILDEPTTGLH---FDDIKKLLevLQRLVDKGNTVVVIEHNLDVIK-TADYI 901
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
20-243 |
1.54e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 39.60 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 20 VRDLNLSVPEGsLYAFIGPNGAGKTTTMRMLLGLIPLDNGTIL----FNNKDIKEWKEELFEnvgCFIDSP-----TYYP 90
Cdd:COG3593 14 IKDLSIELSDD-LTVLVGENNSGKSSILEALRLLLGPSSSRKFdeedFYLGDDPDLPEIEIE---LTFGSLlsrllRLLL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 91 NLTAYENLAY----VQKMINKPLDEIDRVLKITGIYKAKDKKVK----------------------------DFSLGMKQ 138
Cdd:COG3593 90 KEEDKEELEEaleeLNEELKEALKALNELLSEYLKELLDGLDLElelsldeledllkslslriedgkelpldRLGSGFQR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 139 RLGISFAIL-------NDPKILILDEPTNGLDPEGVHEIRRLLLHLVkNEGKTIFISSHNlaeiemiadhiallhkGNLL 211
Cdd:COG3593 170 LILLALLSAlaelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELS-EKPNQVIITTHS----------------PHLL 232
|
250 260 270
....*....|....*....|....*....|..
gi 1261268081 212 YEGNLNSIItsreYIVHVNDTTATERILNTED 243
Cdd:COG3593 233 SEVPLENIR----RLRRDSGGTTSTKLIDLDD 260
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
111-192 |
2.06e-03 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 39.26 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1261268081 111 EIDRVLKITGIYKAKDKKVK----DFSLGMKQRLGISFAI---LNDPKILILDEPTNGLDPEGVHEIRRLLLHLVKNEGK 183
Cdd:COG1106 178 EIEDLVERKLIFKHKGGNVPlplsEESDGTKRLLALAGALldaLAKGGVLLIDEIEASLHPSLLRKLLKLFLDLANKNNA 257
|
....*....
gi 1261268081 184 TIFISSHNL 192
Cdd:COG1106 258 QLIFTTHST 266
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
133-202 |
2.82e-03 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 38.75 E-value: 2.82e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1261268081 133 SLGMKQRLGISFAILN---DPKILILDEPTNGLDPegvHEIRRLL--LHLVKNEGKTIFISSHNLAEIEmIADHI 202
Cdd:cd03271 171 SGGEAQRIKLAKELSKrstGKTLYILDEPTTGLHF---HDVKKLLevLQRLVDKGNTVVVIEHNLDVIK-CADWI 241
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
145-209 |
9.97e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 37.22 E-value: 9.97e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1261268081 145 AILNDPK---ILILDEPTNGLDPEGVHEIRRLLLHLVKNegKTIFISSHN---LAEIEmiADHIALLHKGN 209
Cdd:COG4637 271 AALLSPRpppLLCIEEPENGLHPDLLPALAELLREASER--TQVIVTTHSpalLDALE--PEEVLVLERED 337
|
|
| |
