NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1267153044|ref|WP_098032255|]
View 

MULTISPECIES: DUF3876 domain-containing protein [Bacteroidales]

Protein Classification

DUF3876 domain-containing protein( domain architecture ID 10585689)

DUF3876 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3876 pfam12992
Domain of unknown function, B. Theta Gene description (DUF3876); Based on Bacteroides ...
 25-115 6.67e-50

Domain of unknown function, B. Theta Gene description (DUF3876); Based on Bacteroides thetaiotaomicron gene BT_0092, a conserved protein found in a conjugate transposon. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or other bacterial species vs when in culture.


:

Pssm-ID: 432926  Cd Length: 91  Bit Score: 153.72  E-value: 6.67e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267153044  25 SC-DVEENRRDMLCGNWESVEGKPDVLIYKEGEAYKVTVFRRSgLRRKLKPETYLLQEENGNLFMNTGFRIDVSYNEATD 103
Cdd:pfam12992   1 SCeEVRSFRLDAMCGTWESVNGRPDVTIYKEGKGYFVTVFHRS-YTGKIKPETYLLQEEDGNLFINTGFRILVDYDEAKD 79

                          90
                  ....*....|..
gi 1267153044 104 VLTFSPNGDYVR 115
Cdd:pfam12992  80 VLSFSPGGDYLR 91
 
Name Accession Description Interval E-value
DUF3876 pfam12992
Domain of unknown function, B. Theta Gene description (DUF3876); Based on Bacteroides ...
 25-115 6.67e-50

Domain of unknown function, B. Theta Gene description (DUF3876); Based on Bacteroides thetaiotaomicron gene BT_0092, a conserved protein found in a conjugate transposon. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or other bacterial species vs when in culture.


Pssm-ID: 432926  Cd Length: 91  Bit Score: 153.72  E-value: 6.67e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267153044  25 SC-DVEENRRDMLCGNWESVEGKPDVLIYKEGEAYKVTVFRRSgLRRKLKPETYLLQEENGNLFMNTGFRIDVSYNEATD 103
Cdd:pfam12992   1 SCeEVRSFRLDAMCGTWESVNGRPDVTIYKEGKGYFVTVFHRS-YTGKIKPETYLLQEEDGNLFINTGFRILVDYDEAKD 79

                          90
                  ....*....|..
gi 1267153044 104 VLTFSPNGDYVR 115
Cdd:pfam12992  80 VLSFSPGGDYLR 91
 
Name Accession Description Interval E-value
DUF3876 pfam12992
Domain of unknown function, B. Theta Gene description (DUF3876); Based on Bacteroides ...
 25-115 6.67e-50

Domain of unknown function, B. Theta Gene description (DUF3876); Based on Bacteroides thetaiotaomicron gene BT_0092, a conserved protein found in a conjugate transposon. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or other bacterial species vs when in culture.


Pssm-ID: 432926  Cd Length: 91  Bit Score: 153.72  E-value: 6.67e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267153044  25 SC-DVEENRRDMLCGNWESVEGKPDVLIYKEGEAYKVTVFRRSgLRRKLKPETYLLQEENGNLFMNTGFRIDVSYNEATD 103
Cdd:pfam12992   1 SCeEVRSFRLDAMCGTWESVNGRPDVTIYKEGKGYFVTVFHRS-YTGKIKPETYLLQEEDGNLFINTGFRILVDYDEAKD 79

                          90
                  ....*....|..
gi 1267153044 104 VLTFSPNGDYVR 115
Cdd:pfam12992  80 VLSFSPGGDYLR 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH