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Conserved domains on  [gi|1267430258|ref|WP_098252957|]
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MULTISPECIES: YrdB family protein [Bacillus]

Protein Classification

YrdB family protein( domain architecture ID 10566754)

YrdB family protein is a DUF2568 domain-containing protein; similar to Bacillus subtilis protein YrdB

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2568 pfam10823
Protein of unknown function (DUF2568); One member in this family is annotated as yrdB which is ...
 8-99 1.20e-13

Protein of unknown function (DUF2568); One member in this family is annotated as yrdB which is part of a four gene operon however currently no function is known.


:

Pssm-ID: 431512  Cd Length: 92  Bit Score: 61.05  E-value: 1.20e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267430258   8 ALRFMLELCVLGIVGYWGFRVGTITAIKIILAIILPIIVAVIWALFGAPHAECEVQGILHVLLEIIVFGTGVAALYHLKH 87
Cdd:pfam10823   1 LLRFLLELAALAALGYWGFRLGGGTPLRILLAVGLPLLAAVVWGLFAAPRARVRLPGPARLLVELLVFGGAAAALAVAGH 80

                          90
                  ....*....|..
gi 1267430258  88 PMLASGLAIIIV 99
Cdd:pfam10823  81 PTLAIIFAAVAA 92
 
Name Accession Description Interval E-value
DUF2568 pfam10823
Protein of unknown function (DUF2568); One member in this family is annotated as yrdB which is ...
 8-99 1.20e-13

Protein of unknown function (DUF2568); One member in this family is annotated as yrdB which is part of a four gene operon however currently no function is known.


Pssm-ID: 431512  Cd Length: 92  Bit Score: 61.05  E-value: 1.20e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267430258   8 ALRFMLELCVLGIVGYWGFRVGTITAIKIILAIILPIIVAVIWALFGAPHAECEVQGILHVLLEIIVFGTGVAALYHLKH 87
Cdd:pfam10823   1 LLRFLLELAALAALGYWGFRLGGGTPLRILLAVGLPLLAAVVWGLFAAPRARVRLPGPARLLVELLVFGGAAAALAVAGH 80

                          90
                  ....*....|..
gi 1267430258  88 PMLASGLAIIIV 99
Cdd:pfam10823  81 PTLAIIFAAVAA 92
 
Name Accession Description Interval E-value
DUF2568 pfam10823
Protein of unknown function (DUF2568); One member in this family is annotated as yrdB which is ...
 8-99 1.20e-13

Protein of unknown function (DUF2568); One member in this family is annotated as yrdB which is part of a four gene operon however currently no function is known.


Pssm-ID: 431512  Cd Length: 92  Bit Score: 61.05  E-value: 1.20e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267430258   8 ALRFMLELCVLGIVGYWGFRVGTITAIKIILAIILPIIVAVIWALFGAPHAECEVQGILHVLLEIIVFGTGVAALYHLKH 87
Cdd:pfam10823   1 LLRFLLELAALAALGYWGFRLGGGTPLRILLAVGLPLLAAVVWGLFAAPRARVRLPGPARLLVELLVFGGAAAALAVAGH 80

                          90
                  ....*....|..
gi 1267430258  88 PMLASGLAIIIV 99
Cdd:pfam10823  81 PTLAIIFAAVAA 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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