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Conserved domains on  [gi|1267806620|ref|WP_098547521.1|]
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DUF3888 domain-containing protein

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3888 super family cl16035
Protein of unknown function (DUF3888); This family of proteins is functionally uncharacterized. ...
 39-120 6.10e-14

Protein of unknown function (DUF3888); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 111 and 149 amino acids in length.


The actual alignment was detected with superfamily member pfam13027:

Pssm-ID: 463775  Cd Length: 87  Bit Score: 61.93  E-value: 6.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267806620  39 DAFLMMLNPYAEKAIRTKYPD-RSYSLWNANILSLKRVsGGFSNYDFVVKVKYHTFTGPHNPPEGPLVITFSVS-NEVKI 116
Cdd:pfam13027   3 DLLITLLTPYIDEAINKYYGDdLKYELKDAKILEIKRV-NGFRGFHFKITLTVTPYVGPHNPPYGIDRITFEIDgGEVKV 81


                  ....
gi 1267806620 117 LKVE 120
Cdd:pfam13027  82 IDFK 85
 
Name Accession Description Interval E-value
DUF3888 pfam13027
Protein of unknown function (DUF3888); This family of proteins is functionally uncharacterized. ...
 39-120 6.10e-14

Protein of unknown function (DUF3888); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 111 and 149 amino acids in length.


Pssm-ID: 463775  Cd Length: 87  Bit Score: 61.93  E-value: 6.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267806620  39 DAFLMMLNPYAEKAIRTKYPD-RSYSLWNANILSLKRVsGGFSNYDFVVKVKYHTFTGPHNPPEGPLVITFSVS-NEVKI 116
Cdd:pfam13027   3 DLLITLLTPYIDEAINKYYGDdLKYELKDAKILEIKRV-NGFRGFHFKITLTVTPYVGPHNPPYGIDRITFEIDgGEVKV 81


                  ....
gi 1267806620 117 LKVE 120
Cdd:pfam13027  82 IDFK 85
 
Name Accession Description Interval E-value
DUF3888 pfam13027
Protein of unknown function (DUF3888); This family of proteins is functionally uncharacterized. ...
 39-120 6.10e-14

Protein of unknown function (DUF3888); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 111 and 149 amino acids in length.


Pssm-ID: 463775  Cd Length: 87  Bit Score: 61.93  E-value: 6.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267806620  39 DAFLMMLNPYAEKAIRTKYPD-RSYSLWNANILSLKRVsGGFSNYDFVVKVKYHTFTGPHNPPEGPLVITFSVS-NEVKI 116
Cdd:pfam13027   3 DLLITLLTPYIDEAINKYYGDdLKYELKDAKILEIKRV-NGFRGFHFKITLTVTPYVGPHNPPYGIDRITFEIDgGEVKV 81


                  ....
gi 1267806620 117 LKVE 120
Cdd:pfam13027  82 IDFK 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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