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Conserved domains on  [gi|1268689627|ref|WP_098981909.1|]
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DUF448 domain-containing protein

Protein Classification

YlxR and Rpl7Ae domain-containing protein( domain architecture ID 10006582)

YlxR and Rpl7Ae domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 84-176 2.65e-17

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 72.88  E-value: 2.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268689627  84 KNYLNILNSMKNSGELVFGINLLFENIEY--VHFIVMAQDISKKNEEKVLRRISELKIPYVVVGTMQELGKVFNKEEITV 161
Cdd:COG1358     1 DKILNLLGLARRAGKLVSGEEQVLKAIRKgkAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIGKVGRAV 80

                          90
                  ....*....|....*
gi 1268689627 162 IGIKDKKMARGLIEE 176
Cdd:COG1358    81 VAITDEGFAKKLLEL 95
YlxR COG2740
Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function ...
 1-68 1.27e-13

Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function prediction only];


:

Pssm-ID: 442042  Cd Length: 93  Bit Score: 62.99  E-value: 1.27e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1268689627   1 MSNTHIPERTCIICRTKNEKSKLFRLTKVKEAFYEFDKEQKKQSRAVYVCKSLNCL------GKLAKHNKVKLD 68
Cdd:COG2740     2 MKAKKIPLRTCIGCRERKPKKELIRIVRSPDGEVVPDPTGKLPGRGAYLCPDRECLekavkkRAFARALKAKVP 75
 
Name Accession Description Interval E-value
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 84-176 2.65e-17

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 72.88  E-value: 2.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268689627  84 KNYLNILNSMKNSGELVFGINLLFENIEY--VHFIVMAQDISKKNEEKVLRRISELKIPYVVVGTMQELGKVFNKEEITV 161
Cdd:COG1358     1 DKILNLLGLARRAGKLVSGEEQVLKAIRKgkAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIGKVGRAV 80

                          90
                  ....*....|....*
gi 1268689627 162 IGIKDKKMARGLIEE 176
Cdd:COG1358    81 VAITDEGFAKKLLEL 95
YlxR COG2740
Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function ...
 1-68 1.27e-13

Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function prediction only];


Pssm-ID: 442042  Cd Length: 93  Bit Score: 62.99  E-value: 1.27e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1268689627   1 MSNTHIPERTCIICRTKNEKSKLFRLTKVKEAFYEFDKEQKKQSRAVYVCKSLNCL------GKLAKHNKVKLD 68
Cdd:COG2740     2 MKAKKIPLRTCIGCRERKPKKELIRIVRSPDGEVVPDPTGKLPGRGAYLCPDRECLekavkkRAFARALKAKVP 75
PRK05583 PRK05583
ribosomal protein L7Ae family protein; Provisional
 86-175 1.92e-12

ribosomal protein L7Ae family protein; Provisional


Pssm-ID: 235517  Cd Length: 104  Bit Score: 60.45  E-value: 1.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268689627  86 YLNILNSMKNSGELVFGINLLFENIEY--VHFIVMAQDISKKNEEKVLRRISELKIPYVVVGTMQELGKVFNKEEITVIG 163
Cdd:PRK05583    5 FLNFLGLTKKAGKLLEGYNKCEEAIKKkkVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILG 84

                          90
                  ....*....|..
gi 1268689627 164 IKDKKMARGLIE 175
Cdd:PRK05583   85 VKDKNMAKKLLK 96
YlxR pfam04296
Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate ...
 9-64 3.39e-10

Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate metabolic gene expression.


Pssm-ID: 427847  Cd Length: 75  Bit Score: 53.60  E-value: 3.39e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1268689627   9 RTCIICRTKNEKSKLFRLTKVKEAFYEFDKEQKKQSRAVYVCKSLNCLGKLAKHNK 64
Cdd:pfam04296   1 RKCIGCREMKPKKELIRIVRTPDGEVVLDPTGKLPGRGAYICPDRECLEKAKKKKA 56
YlxR cd00279
Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; ...
 7-63 1.37e-08

Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation


Pssm-ID: 238173  Cd Length: 79  Bit Score: 49.64  E-value: 1.37e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1268689627   7 PERTCIICRTKNEKSKLFRLTKVKEAFYEFDKEQKKQSRAVYVCKSLNCLGKLAKHN 63
Cdd:cd00279     1 PLRKCIVTGEMKPKKELIRFVAGPEGEVVPDPTGKLPGRGAYVCADRECIEKAKKKK 57
 
Name Accession Description Interval E-value
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 84-176 2.65e-17

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 72.88  E-value: 2.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268689627  84 KNYLNILNSMKNSGELVFGINLLFENIEY--VHFIVMAQDISKKNEEKVLRRISELKIPYVVVGTMQELGKVFNKEEITV 161
Cdd:COG1358     1 DKILNLLGLARRAGKLVSGEEQVLKAIRKgkAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIGKVGRAV 80

                          90
                  ....*....|....*
gi 1268689627 162 IGIKDKKMARGLIEE 176
Cdd:COG1358    81 VAITDEGFAKKLLEL 95
YlxR COG2740
Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function ...
 1-68 1.27e-13

Nucleoid-associated protein YlxR, Predicted RNA-binding, DUF448 family [General function prediction only];


Pssm-ID: 442042  Cd Length: 93  Bit Score: 62.99  E-value: 1.27e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1268689627   1 MSNTHIPERTCIICRTKNEKSKLFRLTKVKEAFYEFDKEQKKQSRAVYVCKSLNCL------GKLAKHNKVKLD 68
Cdd:COG2740     2 MKAKKIPLRTCIGCRERKPKKELIRIVRSPDGEVVPDPTGKLPGRGAYLCPDRECLekavkkRAFARALKAKVP 75
PRK05583 PRK05583
ribosomal protein L7Ae family protein; Provisional
 86-175 1.92e-12

ribosomal protein L7Ae family protein; Provisional


Pssm-ID: 235517  Cd Length: 104  Bit Score: 60.45  E-value: 1.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268689627  86 YLNILNSMKNSGELVFGINLLFENIEY--VHFIVMAQDISKKNEEKVLRRISELKIPYVVVGTMQELGKVFNKEEITVIG 163
Cdd:PRK05583    5 FLNFLGLTKKAGKLLEGYNKCEEAIKKkkVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILG 84

                          90
                  ....*....|..
gi 1268689627 164 IKDKKMARGLIE 175
Cdd:PRK05583   85 VKDKNMAKKLLK 96
YlxR pfam04296
Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate ...
 9-64 3.39e-10

Protein of unknown function (DUF448); The YlxR family has been demonstrated to regulate metabolic gene expression.


Pssm-ID: 427847  Cd Length: 75  Bit Score: 53.60  E-value: 3.39e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1268689627   9 RTCIICRTKNEKSKLFRLTKVKEAFYEFDKEQKKQSRAVYVCKSLNCLGKLAKHNK 64
Cdd:pfam04296   1 RKCIGCREMKPKKELIRIVRTPDGEVVLDPTGKLPGRGAYICPDRECLEKAKKKKA 56
YlxR cd00279
Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; ...
 7-63 1.37e-08

Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation


Pssm-ID: 238173  Cd Length: 79  Bit Score: 49.64  E-value: 1.37e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1268689627   7 PERTCIICRTKNEKSKLFRLTKVKEAFYEFDKEQKKQSRAVYVCKSLNCLGKLAKHN 63
Cdd:cd00279     1 PLRKCIVTGEMKPKKELIRFVAGPEGEVVPDPTGKLPGRGAYVCADRECIEKAKKKK 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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