RHS repeat-associated core domain-containing protein [Stenotrophomonas maltophilia]
Protein Classification
RHS repeat-associated core domain-containing protein( domain architecture ID 11460017)
RHS (rearrangement hotspot) repeat-associated core domain-containing protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| Rhs_assc_core | TIGR03696 | RHS repeat-associated core domain; This model represents a conserved unique core sequence ... |
58-136 | 5.75e-21 | ||||
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain. : Pssm-ID: 274730 [Multi-domain] Cd Length: 77 Bit Score: 84.86 E-value: 5.75e-21
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| RhsA | COG3209 | Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ... |
35-213 | 1.26e-20 | ||||
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]; : Pssm-ID: 442442 [Multi-domain] Cd Length: 1103 Bit Score: 92.51 E-value: 1.26e-20
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| Name | Accession | Description | Interval | E-value | ||||
| Rhs_assc_core | TIGR03696 | RHS repeat-associated core domain; This model represents a conserved unique core sequence ... |
58-136 | 5.75e-21 | ||||
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain. Pssm-ID: 274730 [Multi-domain] Cd Length: 77 Bit Score: 84.86 E-value: 5.75e-21
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| RhsA | COG3209 | Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ... |
35-213 | 1.26e-20 | ||||
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]; Pssm-ID: 442442 [Multi-domain] Cd Length: 1103 Bit Score: 92.51 E-value: 1.26e-20
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| RHS_core | NF041261 | RHS element core protein; |
10-135 | 1.21e-06 | ||||
RHS element core protein; Pssm-ID: 469161 [Multi-domain] Cd Length: 1261 Bit Score: 50.00 E-value: 1.21e-06
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| RHS | pfam03527 | RHS protein; |
31-67 | 1.91e-06 | ||||
RHS protein; Pssm-ID: 427349 [Multi-domain] Cd Length: 38 Bit Score: 43.83 E-value: 1.91e-06
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| Name | Accession | Description | Interval | E-value | ||||
| Rhs_assc_core | TIGR03696 | RHS repeat-associated core domain; This model represents a conserved unique core sequence ... |
58-136 | 5.75e-21 | ||||
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain. Pssm-ID: 274730 [Multi-domain] Cd Length: 77 Bit Score: 84.86 E-value: 5.75e-21
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| RhsA | COG3209 | Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ... |
35-213 | 1.26e-20 | ||||
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]; Pssm-ID: 442442 [Multi-domain] Cd Length: 1103 Bit Score: 92.51 E-value: 1.26e-20
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| RHS_core | NF041261 | RHS element core protein; |
10-135 | 1.21e-06 | ||||
RHS element core protein; Pssm-ID: 469161 [Multi-domain] Cd Length: 1261 Bit Score: 50.00 E-value: 1.21e-06
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| RHS | pfam03527 | RHS protein; |
31-67 | 1.91e-06 | ||||
RHS protein; Pssm-ID: 427349 [Multi-domain] Cd Length: 38 Bit Score: 43.83 E-value: 1.91e-06
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| Blast search parameters | ||||
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