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Conserved domains on  [gi|1288435009|ref|WP_100541649|]
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MULTISPECIES: anti-sigma-F factor Fin family protein [Paenibacillus]

Protein Classification

anti-sigma-F factor Fin family protein( domain architecture ID 10567041)

anti-sigma-F factor Fin family protein similar to Bacillus subtilis Fin, an anti-sigma factor for sporulation specific sigma-F factor, which allows the switch to sigma-G factor and progression to the late sporulation development stages by antagonizing sigma-F

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YabK COG5867
Anti-sigma-F factor Fin [Cell cycle control, cell division, chromosome partitioning, Signal ...
1-76 1.00e-34

Anti-sigma-F factor Fin [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


:

Pssm-ID: 444569  Cd Length: 76  Bit Score: 112.69  E-value: 1.00e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1288435009  1 MAITYVCRHCRAFQGRIDSNHVSEARLGFDSLTPEERKDIIAYDFDGEVMVRVTCDHCREALEAHPELSLLANPLQ 76
Cdd:COG5867    1 MAIHYRCRHCGTKIGELDQDQVDEERLGFHQLTPEERQDMITYDENGDITVKTICEDCEEALERNPEYHELENFIQ 76
 
Name Accession Description Interval E-value
YabK COG5867
Anti-sigma-F factor Fin [Cell cycle control, cell division, chromosome partitioning, Signal ...
1-76 1.00e-34

Anti-sigma-F factor Fin [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444569  Cd Length: 76  Bit Score: 112.69  E-value: 1.00e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1288435009  1 MAITYVCRHCRAFQGRIDSNHVSEARLGFDSLTPEERKDIIAYDFDGEVMVRVTCDHCREALEAHPELSLLANPLQ 76
Cdd:COG5867    1 MAIHYRCRHCGTKIGELDQDQVDEERLGFHQLTPEERQDMITYDENGDITVKTICEDCEEALERNPEYHELENFIQ 76
Fin pfam10955
Anti-sigma-F factor Fin; Fin (formerly known as YabK) is a small protein required for ...
1-68 3.24e-25

Anti-sigma-F factor Fin; Fin (formerly known as YabK) is a small protein required for efficient switching from sigma(F)- to sigma(G)-directed gene expression during sporulation in Bacillus subtilis. Fin has been proposed to be an anti-sigma(F) factor which, by disabling sigma(F), promotes the switch to late developmental gene expression in the forespore.


Pssm-ID: 402506  Cd Length: 73  Bit Score: 88.47  E-value: 3.24e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1288435009  1 MAITYVCRHCRAFQGRIDSNHVSEARLGFDSLTPEERKDIIAYDFDGEVMVRVTCDHCREALEAHPEL 68
Cdd:pfam10955  1 MAIHYYCRHCGVKIGTLDHDDIDAEQLGFHHLTEEERQDMISYHENGDIHVKVICEDCQEALERNPDY 68
 
Name Accession Description Interval E-value
YabK COG5867
Anti-sigma-F factor Fin [Cell cycle control, cell division, chromosome partitioning, Signal ...
1-76 1.00e-34

Anti-sigma-F factor Fin [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444569  Cd Length: 76  Bit Score: 112.69  E-value: 1.00e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1288435009  1 MAITYVCRHCRAFQGRIDSNHVSEARLGFDSLTPEERKDIIAYDFDGEVMVRVTCDHCREALEAHPELSLLANPLQ 76
Cdd:COG5867    1 MAIHYRCRHCGTKIGELDQDQVDEERLGFHQLTPEERQDMITYDENGDITVKTICEDCEEALERNPEYHELENFIQ 76
Fin pfam10955
Anti-sigma-F factor Fin; Fin (formerly known as YabK) is a small protein required for ...
1-68 3.24e-25

Anti-sigma-F factor Fin; Fin (formerly known as YabK) is a small protein required for efficient switching from sigma(F)- to sigma(G)-directed gene expression during sporulation in Bacillus subtilis. Fin has been proposed to be an anti-sigma(F) factor which, by disabling sigma(F), promotes the switch to late developmental gene expression in the forespore.


Pssm-ID: 402506  Cd Length: 73  Bit Score: 88.47  E-value: 3.24e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1288435009  1 MAITYVCRHCRAFQGRIDSNHVSEARLGFDSLTPEERKDIIAYDFDGEVMVRVTCDHCREALEAHPEL 68
Cdd:pfam10955  1 MAIHYYCRHCGVKIGTLDHDDIDAEQLGFHHLTEEERQDMISYHENGDIHVKVICEDCQEALERNPDY 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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