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Conserved domains on  [gi|1302563471|ref|WP_100929806|]
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MULTISPECIES: 2Fe-2S iron-sulfur cluster-binding protein [unclassified Sagittula]

Protein Classification

similar to 2Fe-2S ferredoxin-5( domain architecture ID 10001920)

protein similar to 2Fe-2S ferredoxin-5

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fdx COG0633
Ferredoxin [Energy production and conversion];
4-87 7.23e-17

Ferredoxin [Energy production and conversion];


:

Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 68.72  E-value: 7.23e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1302563471  4 AKLTFTDVSLTVNVPAGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEGaenlsEPSALEAQVLREAMAGRNDRLACQC 83
Cdd:COG0633    2 PKVTFIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEG-----EVDHREEDALSDEERAAGSRLACQA 76


                 ....
gi 1302563471 84 QVLG 87
Cdd:COG0633   77 RPTS 80
 
Name Accession Description Interval E-value
Fdx COG0633
Ferredoxin [Energy production and conversion];
4-87 7.23e-17

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 68.72  E-value: 7.23e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1302563471  4 AKLTFTDVSLTVNVPAGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEGaenlsEPSALEAQVLREAMAGRNDRLACQC 83
Cdd:COG0633    2 PKVTFIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEG-----EVDHREEDALSDEERAAGSRLACQA 76


                 ....
gi 1302563471 84 QVLG 87
Cdd:COG0633   77 RPTS 80
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 14-90 9.37e-14

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 60.49  E-value: 9.37e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1302563471 14 TVNVPAGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEGAENLSEPSALEaqvlrEAMAGRNDRLACQCQVLGGTV 90
Cdd:cd00207   11 EVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLD-----EEEAEGGYVLACQTRVTDGLV 82
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
6-85 1.77e-08

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 47.13  E-value: 1.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1302563471  6 LTFTDVSLTVNVPAG-TRIIEISEKIGAGITYGCREGDCGTCLTYVEEGaENLSEPSALEAQVLREAMAgrndRLACQCQ 84
Cdd:pfam00111  1 VTINGKGVTIEVPDGeTTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEG-EDQSDQSFLEDDELAAGYV----VLACQTY 75


                 .
gi 1302563471 85 V 85
Cdd:pfam00111 76 P 76
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
17-87 2.42e-07

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 46.64  E-value: 2.42e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1302563471  17 VPAGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEGAENLSEPSALEAQVLREAMagrndRLACQCQVLG 87
Cdd:PRK05713   13 VPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGW-----RLACQCRVVG 78
 
Name Accession Description Interval E-value
Fdx COG0633
Ferredoxin [Energy production and conversion];
4-87 7.23e-17

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 68.72  E-value: 7.23e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1302563471  4 AKLTFTDVSLTVNVPAGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEGaenlsEPSALEAQVLREAMAGRNDRLACQC 83
Cdd:COG0633    2 PKVTFIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEG-----EVDHREEDALSDEERAAGSRLACQA 76


                 ....
gi 1302563471 84 QVLG 87
Cdd:COG0633   77 RPTS 80
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 14-90 9.37e-14

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 60.49  E-value: 9.37e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1302563471 14 TVNVPAGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEGAENLSEPSALEaqvlrEAMAGRNDRLACQCQVLGGTV 90
Cdd:cd00207   11 EVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLD-----EEEAEGGYVLACQTRVTDGLV 82
COG3894 COG3894
Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain ...
 1-90 3.73e-12

Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain [Function unknown];


Pssm-ID: 443101 [Multi-domain]  Cd Length: 621  Bit Score: 60.20  E-value: 3.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1302563471   1 MPHAKLTFTDVSLTVNVPAGTRIIEISEKIGAGITYGCR-EGDCGTCLTYVEEGaeNLSEPSALEAQVLREAMAGRNDRL 79
Cdd:COG3894     1 MPKVKVTFLPSGKRVEVEAGTTLLDAAREAGVDIDAPCGgRGTCGKCKVKVEEG--EFSPVTEEERRLLSPEELAEGYRL 78

                          90
                  ....*....|.
gi 1302563471  80 ACQCQVLGGTV 90
Cdd:COG3894    79 ACQARVLGDLV 89
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
6-85 1.77e-08

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 47.13  E-value: 1.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1302563471  6 LTFTDVSLTVNVPAG-TRIIEISEKIGAGITYGCREGDCGTCLTYVEEGaENLSEPSALEAQVLREAMAgrndRLACQCQ 84
Cdd:pfam00111  1 VTINGKGVTIEVPDGeTTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEG-EDQSDQSFLEDDELAAGYV----VLACQTY 75


                 .
gi 1302563471 85 V 85
Cdd:pfam00111 76 P 76
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
17-87 2.42e-07

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 46.64  E-value: 2.42e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1302563471  17 VPAGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEGAENLSEPSALEAQVLREAMagrndRLACQCQVLG 87
Cdd:PRK05713   13 VPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGW-----RLACQCRVVG 78
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 5-90 1.39e-04

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 38.92  E-value: 1.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1302563471   5 KLTFTDVS--LTVNVPAGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEGAENLSEPSALEAQVLREAMAgrndrLACQ 82
Cdd:PRK10684  248 GLTFTKLQpaREFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYV-----LACS 322


                  ....*...
gi 1302563471  83 CQVLGGTV 90
Cdd:PRK10684  323 CHPQGDLV 330
petF CHL00134
ferredoxin; Validated
 10-64 1.54e-04

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 37.39  E-value: 1.54e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1302563471 10 DVSLTVNVPAGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEGAENLSEPSALE 64
Cdd:CHL00134  14 GIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLD 68
NqrF COG2871
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and ...
 5-85 9.21e-04

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 442118 [Multi-domain]  Cd Length: 396  Bit Score: 36.38  E-value: 9.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1302563471   5 KLTFTDVSLTVNVPAGTRIIEI--SEKIGagITYGC-REGDCGTCLTYVEEGAENL--SEPSALEAQVLREamagrNDRL 79
Cdd:COG2871    36 KITINGDGKEIEVEEGQTLLDAllRQGIF--LPSACgGGGTCGQCKVKVLEGGGDIlpTETFHLSDRERKE-----GYRL 108


                  ....*.
gi 1302563471  80 ACQCQV 85
Cdd:COG2871   109 ACQVKV 114
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 19-87 2.68e-03

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 35.23  E-value: 2.68e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1302563471  19 AGTRIIEISEKIGAGITYGCREGDCGTCLTYVEEG--AENLSEPSALEAQVLREAMAgrndrLACQCQVLG 87
Cdd:PRK07609   18 PDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGevEQGPHQASALSGEERAAGEA-----LTCCAKPLS 83
PTZ00038 PTZ00038
ferredoxin; Provisional
 23-67 2.76e-03

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 34.81  E-value: 2.76e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1302563471  23 IIEISEKIGAGITYGCREGDCGTCLTYVEEGAENLSEPSAL-EAQV 67
Cdd:PTZ00038  117 ILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLdDEQL 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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