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Conserved domains on  [gi|1306833450|ref|WP_101003116|]
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LPP20 family lipoprotein [Helicobacter pylori]

Protein Classification

LPP20 family lipoprotein( domain architecture ID 10490045)

LPP20 family lipoprotein similar to Helicobacter pylori antigenic Lpp20 (HP1456) that plays an important role in bacterium survival and host colonization, and also promotes epithelial-mesenchymal transition

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LPP20 pfam02169
LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class ...
 45-159 2.66e-12

LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class of lipoprotein.


:

Pssm-ID: 426634  Cd Length: 96  Bit Score: 59.75  E-value: 2.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306833450  45 PDWVVgdleKVAKYEKYsgvFLGRAEDLitnndvdySTNQATAKARANLAANLKSTLQKDLENEKTRtvdasGKRSISGT 124
Cdd:pfam02169   1 PDWES----SNPPSERY---LLGVGSAK--------SLRAAAADALRDIAAQLSVTVVSSSSTQETR-----GAVQTLIT 60

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1306833450 125 DTEKISQLVDKELIASKMLARY-IGKDRVFVLVGLD 159
Cdd:pfam02169  61 TSSSVRQRVDSVLRGTRIVETWeLPSGRYYALAVLD 96
 
Name Accession Description Interval E-value
LPP20 pfam02169
LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class ...
 45-159 2.66e-12

LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class of lipoprotein.


Pssm-ID: 426634  Cd Length: 96  Bit Score: 59.75  E-value: 2.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306833450  45 PDWVVgdleKVAKYEKYsgvFLGRAEDLitnndvdySTNQATAKARANLAANLKSTLQKDLENEKTRtvdasGKRSISGT 124
Cdd:pfam02169   1 PDWES----SNPPSERY---LLGVGSAK--------SLRAAAADALRDIAAQLSVTVVSSSSTQETR-----GAVQTLIT 60

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1306833450 125 DTEKISQLVDKELIASKMLARY-IGKDRVFVLVGLD 159
Cdd:pfam02169  61 TSSSVRQRVDSVLRGTRIVETWeLPSGRYYALAVLD 96
 
Name Accession Description Interval E-value
LPP20 pfam02169
LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class ...
 45-159 2.66e-12

LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class of lipoprotein.


Pssm-ID: 426634  Cd Length: 96  Bit Score: 59.75  E-value: 2.66e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1306833450  45 PDWVVgdleKVAKYEKYsgvFLGRAEDLitnndvdySTNQATAKARANLAANLKSTLQKDLENEKTRtvdasGKRSISGT 124
Cdd:pfam02169   1 PDWES----SNPPSERY---LLGVGSAK--------SLRAAAADALRDIAAQLSVTVVSSSSTQETR-----GAVQTLIT 60

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1306833450 125 DTEKISQLVDKELIASKMLARY-IGKDRVFVLVGLD 159
Cdd:pfam02169  61 TSSSVRQRVDSVLRGTRIVETWeLPSGRYYALAVLD 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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