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Conserved domains on  [gi|1310912425|ref|WP_101046646|]
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OmpA family protein [Tenacibaculum sp. Bg11-29]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 234-338 3.23e-38

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 131.91  E-value: 3.23e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 234 TLQINFDTGKSRIKASSYDVISEIVKMMKVNSNLKISIEGHTDNVGDELSNMKLSKNRARSVLMAISDEDIDESRLKSEG 313
Cdd:cd07185     1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                          90       100
                  ....*....|....*....|....*
gi 1310912425 314 FGQTKPVENNSTEEGKTKNRRVELR 338
Cdd:cd07185    81 YGESRPIASNDTEEGRAKNRRVEIV 105
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 234-338 3.23e-38

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 131.91  E-value: 3.23e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 234 TLQINFDTGKSRIKASSYDVISEIVKMMKVNSNLKISIEGHTDNVGDELSNMKLSKNRARSVLMAISDEDIDESRLKSEG 313
Cdd:cd07185     1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                          90       100
                  ....*....|....*....|....*
gi 1310912425 314 FGQTKPVENNSTEEGKTKNRRVELR 338
Cdd:cd07185    81 YGESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 215-338 4.60e-38

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 137.61  E-value: 4.60e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 215 IVKFTADDILKEINAKGFATLQINFDTGKSRIKASSYDVISEIVKMMKVNSNLKISIEGHTDNVGDELSNMKLSKNRARS 294
Cdd:COG2885   167 EAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEA 246

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1310912425 295 VLMAISDEDIDESRLKSEGFGQTKPVENNSTEEGKTKNRRVELR 338
Cdd:COG2885   247 VKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIV 290
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 226-337 2.09e-19

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 86.60  E-value: 2.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 226 EINAKgfatlqINFDTGKSRIKASSYDVISEIVKMMKVNSNlKISIEGHTDNVGDEL----SNMKLSKNRARSVLMAISD 301
Cdd:PRK09038  130 EINSS------LLFGSGDAMLSDQAFAILEKVAEVLKPAPN-PIHVEGFTDNVPIATaqfpSNWELSAARAASVVRLLAD 202

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1310912425 302 EDIDESRLKSEGFGQTKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK09038  203 DGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVL 238
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 239-332 9.62e-18

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 77.01  E-value: 9.62e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 239 FDTGKSRIKASSYDVISEIVKMMKVNSNLK-ISIEGHTDNVGDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGFGQT 317
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1310912425 318 KPVENNSTEEGKTKN 332
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 239-336 4.47e-15

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 71.18  E-value: 4.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 239 FDTGKSRIKASSYDVISEIVKMMKVNsNLKISIEGHTDNV----GDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGF 314
Cdd:TIGR03350  34 FASGSAEVRAEFEPLLLRIAKALAAV-PGRITVVGHTDNVpirtARFPSNWHLSEARAKAVADVLAQAGGPAGRVRAEGR 112

                          90       100
                  ....*....|....*....|..
gi 1310912425 315 GQTKPVENNSTEEGKTKNRRVE 336
Cdd:TIGR03350 113 GDSEPIASNATAAGRARNRRVE 134
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 234-338 3.23e-38

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 131.91  E-value: 3.23e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 234 TLQINFDTGKSRIKASSYDVISEIVKMMKVNSNLKISIEGHTDNVGDELSNMKLSKNRARSVLMAISDEDIDESRLKSEG 313
Cdd:cd07185     1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                          90       100
                  ....*....|....*....|....*
gi 1310912425 314 FGQTKPVENNSTEEGKTKNRRVELR 338
Cdd:cd07185    81 YGESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 215-338 4.60e-38

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 137.61  E-value: 4.60e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 215 IVKFTADDILKEINAKGFATLQINFDTGKSRIKASSYDVISEIVKMMKVNSNLKISIEGHTDNVGDELSNMKLSKNRARS 294
Cdd:COG2885   167 EAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEA 246

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1310912425 295 VLMAISDEDIDESRLKSEGFGQTKPVENNSTEEGKTKNRRVELR 338
Cdd:COG2885   247 VKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIV 290
MotB COG1360
Flagellar motor protein MotB [Cell motility];
204-338 1.06e-26

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 103.77  E-value: 1.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 204 AIVEEIEFKQTIVKFTADDILKEINAKGFatlqinFDTGKSRIKASSYDVISEIVKMMKVNSNlKISIEGHTDNV----G 279
Cdd:COG1360    34 ALEENLLSGQVEVRITEEGLVIEIQDRVL------FDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDNVpistA 106

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1310912425 280 DELSNMKLSKNRARSVLMAISDEDIDESRLKSEGFGQTKPVENNSTEEGKTKNRRVELR 338
Cdd:COG1360   107 RFPSNWELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIV 165
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 226-337 2.09e-19

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 86.60  E-value: 2.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 226 EINAKgfatlqINFDTGKSRIKASSYDVISEIVKMMKVNSNlKISIEGHTDNVGDEL----SNMKLSKNRARSVLMAISD 301
Cdd:PRK09038  130 EINSS------LLFGSGDAMLSDQAFAILEKVAEVLKPAPN-PIHVEGFTDNVPIATaqfpSNWELSAARAASVVRLLAD 202

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1310912425 302 EDIDESRLKSEGFGQTKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK09038  203 DGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVL 238
PRK10510 PRK10510
OmpA family lipoprotein;
237-337 3.47e-18

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 81.84  E-value: 3.47e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 237 INFDTGKSRIKASSYDVISEIVKMMKVNSNLKISIEGHTDNVGDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGFGQ 316
Cdd:PRK10510  114 VTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGP 193

                          90       100
                  ....*....|....*....|.
gi 1310912425 317 TKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK10510  194 ANPIASNSTAEGKAQNRRVEI 214
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 239-332 9.62e-18

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 77.01  E-value: 9.62e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 239 FDTGKSRIKASSYDVISEIVKMMKVNSNLK-ISIEGHTDNVGDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGFGQT 317
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1310912425 318 KPVENNSTEEGKTKN 332
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 239-336 4.47e-15

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 71.18  E-value: 4.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 239 FDTGKSRIKASSYDVISEIVKMMKVNsNLKISIEGHTDNV----GDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGF 314
Cdd:TIGR03350  34 FASGSAEVRAEFEPLLLRIAKALAAV-PGRITVVGHTDNVpirtARFPSNWHLSEARAKAVADVLAQAGGPAGRVRAEGR 112

                          90       100
                  ....*....|....*....|..
gi 1310912425 315 GQTKPVENNSTEEGKTKNRRVE 336
Cdd:TIGR03350 113 GDSEPIASNATAAGRARNRRVE 134
PRK06925 PRK06925
flagellar motor protein MotB;
236-337 5.82e-15

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 73.26  E-value: 5.82e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 236 QINFDTGKSRIKASSYDVISEIVKMMKVNSNLkISIEGHTDNVGDEL----SNMKLSKNRARSVL-MAISDEDIDESRLK 310
Cdd:PRK06925  119 AVLFETGEADILKQAEPFLHKIGVLLSTIPND-IKVEGHTDSRPISTyrypSNWELSAARASSVIrYFTSKEKLDSSRFI 197

                          90       100
                  ....*....|....*....|....*..
gi 1310912425 311 SEGFGQTKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK06925  198 AVGYADTKPVVPNTTEENMQENRRVEI 224
motB PRK07734
flagellar motor protein MotB; Reviewed
 237-337 4.03e-14

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 71.31  E-value: 4.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 237 INFDTGKSRIKASSYDVISEIVKMMKVNSNLKISIEGHTDNV----GDELSNMKLSKNRARSVL-MAISDEDIDESRLKS 311
Cdd:PRK07734  144 ILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDNVpianAQFASNWELSVMRAVNFMqVLLENKELDPEKFSA 223

                          90       100
                  ....*....|....*....|....*.
gi 1310912425 312 EGFGQTKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK07734  224 KGYGEYKPIASNDTAEGRAKNRRVEV 249
motB PRK06667
flagellar motor protein MotB; Validated
 190-337 8.08e-13

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 67.51  E-value: 8.08e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 190 VNKKIGVQIFKKRMAIVEEIEFKQTIVKFTADDILKEINAKGFatlqinFDTGKSRIK-ASSYDVISEIVKMMKVNSNL- 267
Cdd:PRK06667   86 KGKQLSQAKKNASSLFKPEIQSNKVAVTEDERGLVISLASDAF------FYPGSAEVKlEENRETLQKIASFIGFLDLAg 159

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1310912425 268 -KISIEGHTDNV-----GDELSNMKLSKNRARSVLMAISD-EDIDESRLKSEGFGQTKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK06667  160 rNFRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNyGDQSESWFQVSGFAGSRPLATEDTPEGRAYNRRIDI 236
motB PRK08944
flagellar motor protein MotB; Reviewed
 268-336 1.54e-12

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 66.96  E-value: 1.54e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1310912425 268 KISIEGHTDNVG--DEL--SNMKLSKNRARSVLMA-ISDEDIDESRLKSEGFGQTKPVENNSTEEGKTKNRRVE 336
Cdd:PRK08944  211 IITVSGHTDNVPisSELyrSNWDLSSARAVAVAHElLKVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVE 284
PRK09967 PRK09967
OmpA family protein;
237-335 1.88e-12

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 64.62  E-value: 1.88e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 237 INFDTGKSRIKASSYDVISEIVKMMKVNSNLKISIEGHTDNVGDELSNMKLSKNRARSVLMAISD-EDIDESRLKSEGFG 315
Cdd:PRK09967   54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMgGQIPRSNLTTQGLG 133

                          90       100
                  ....*....|....*....|
gi 1310912425 316 QTKPVENNSTEEGKTKNRRV 335
Cdd:PRK09967  134 KKYPIASNKTAQGRAENRRV 153
PRK08126 PRK08126
hypothetical protein; Provisional
 239-337 4.10e-12

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 66.64  E-value: 4.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 239 FDTGKSRIKASSYDVISEIV-KMMKVNSnlKISIEGHTDNV----GDELSNMKLSKNRARSVLMAISDEDIDESRLKSEG 313
Cdd:PRK08126  327 FVPGQATVNPAMGPLIAKIArEIARVGG--KVTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVG 404

                          90       100
                  ....*....|....*....|....
gi 1310912425 314 FGQTKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK08126  405 KGDAQPVADNRTPQGRAQNRRVEI 428
PRK09039 PRK09039
peptidoglycan -binding protein;
252-338 2.58e-11

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 63.83  E-value: 2.58e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 252 DVISEIVKMMKVNSNLKISIEGHTDNV-----GDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGFGQTKPVENNSTE 326
Cdd:PRK09039  248 AALIELAKEIPPEINWVLRVDGHTDNVplsgtGRFRDNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTP 327

                          90
                  ....*....|..
gi 1310912425 327 EGKTKNRRVELR 338
Cdd:PRK09039  328 EARARNRRIELK 339
PRK07033 PRK07033
DotU family type VI secretion system protein;
239-337 1.45e-10

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 61.99  E-value: 1.45e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 239 FDTGKSRIKASSYDVISEIVKMMKvNSNLKISIEGHTDNV----GDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGF 314
Cdd:PRK07033  318 FASASTSVRDRYQPVLARVADALN-QVKGNVLVTGYSDNVpirtARFPSNWELSQARAQAVRALLAARLGQPERVTAEGR 396

                          90       100
                  ....*....|....*....|...
gi 1310912425 315 GQTKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK07033  397 GDSDPVAPNDSAENRARNRRVEI 419
motB PRK08457
flagellar motor protein MotB; Reviewed
 219-336 2.83e-10

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 60.11  E-value: 2.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 219 TADDILKEINAKGFATLQIN------------FDTGKSRIkaSSYDV------ISEIVKMMKvnSNLKISIEGHTDN--- 277
Cdd:PRK08457   94 TQQETIERRKGEGGALDQIDngialklpskllFENGSAEI--INADMmdylkrIAKIITKLP--KQVKINVRGYTDNspl 169

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 278 -VGDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGFGQTKPVENNSTEEGKTKNRRVE 336
Cdd:PRK08457  170 nKSRYKDHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVE 229
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 239-335 6.48e-09

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 55.45  E-value: 6.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 239 FDTGKSRIKASSYDVISEIVKMMKVNSNlKISIEGHTDN--VGDEL--SNMKLSKNRARSVLM-AISDEDIDESRLKSEG 313
Cdd:PRK06742  119 FDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSrpIHNDKfpSNWELSSARAANMIHhLIEVYNVDDKRLAAVG 197

                          90       100
                  ....*....|....*....|..
gi 1310912425 314 FGQTKPVENNSTEEGKTKNRRV 335
Cdd:PRK06742  198 YADTKPVVPNDSPQNWEKNRRV 219
PRK09040 PRK09040
hypothetical protein; Provisional
 284-337 5.10e-08

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 52.71  E-value: 5.10e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1310912425 284 NMKLSKNRARSVLMAISDEDIDESRLKSEGFGQTKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK09040  146 NWELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEI 199
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
251-337 5.65e-07

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 49.10  E-value: 5.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1310912425 251 YDVISEIVKMM-------KVNSNLKISIEGHTDNVGDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGFGQTKPVENN 323
Cdd:PRK10802   78 YDIRSDFAQMLdahanflRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLG 157

                          90
                  ....*....|....
gi 1310912425 324 STEEGKTKNRRVEL 337
Cdd:PRK10802  158 HDEAAYAKNRRAVL 171
PRK10808 PRK10808
outer membrane protein A; Reviewed
 273-338 1.35e-05

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 46.22  E-value: 1.35e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1310912425 273 GHTDNVGDELSNMKLSKNRARSVLMAISDEDIDESRLKSEGFGQTKPVENNSTEEGKTK---------NRRVELR 338
Cdd:PRK10808  264 GYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNTCDNVKPRaalidclapDRRVEIE 338
PRK07034 PRK07034
hypothetical protein; Provisional
 269-337 2.67e-05

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 45.94  E-value: 2.67e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1310912425 269 ISIEGHTDN------VGDelSNMKLSKNRARSVLMAISDE-DIDES---RLKSEGFGQTKPVENNSTEEGKTKNRRVEL 337
Cdd:PRK07034  429 IEVIGHTDNkpfrstSGN--NNLKLSAARASVVADKLREStQINEThqrEISAIGRGESDPLADNATEEGRKRNRRVDI 505
motB PRK09041
motility protein MotB;
239-292 2.72e-04

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 42.24  E-value: 2.72e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1310912425 239 FDTGKSRIKASSYDVISEIVKMMKVNSNlKISIEGHTDNV-----GDELSNMKLSKNRA 292
Cdd:PRK09041  165 FATGSAEVEPYMRDILREIAPVLNDVPN-RISLSGHTDATpyangEKGYSNWELSADRA 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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