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Conserved domains on  [gi|1310927124|ref|WP_101053398|]
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MULTISPECIES: late competence development ComFB family protein [Shewanella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ComFB super family cl11315
Late competence development protein ComFB; This family is conserved in bacteria. Some members, ...
 9-81 3.10e-07

Late competence development protein ComFB; This family is conserved in bacteria. Some members, with three conserved cysteines, are annotated as late competence development protein ComFB.


The actual alignment was detected with superfamily member pfam10719:

Pssm-ID: 463181  Cd Length: 79  Bit Score: 43.77  E-value: 3.10e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1310927124  9 YEVMLMEILAEegLMDELPT-----DYVADLACITLNQLPVRYIHHLVDTYFYGDYQEQDRMRNEIYQALEKSRAFLK 81
Cdd:pfam10719  1 MEELVLEELEE--QLEELPDyctceRCLADVAAYALNRLPPRYIVSDEGEAYQKLESERQQLRAEILSAVREAIERVK 76
 
Name Accession Description Interval E-value
ComFB pfam10719
Late competence development protein ComFB; This family is conserved in bacteria. Some members, ...
 9-81 3.10e-07

Late competence development protein ComFB; This family is conserved in bacteria. Some members, with three conserved cysteines, are annotated as late competence development protein ComFB.


Pssm-ID: 463181  Cd Length: 79  Bit Score: 43.77  E-value: 3.10e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1310927124  9 YEVMLMEILAEegLMDELPT-----DYVADLACITLNQLPVRYIHHLVDTYFYGDYQEQDRMRNEIYQALEKSRAFLK 81
Cdd:pfam10719  1 MEELVLEELEE--QLEELPDyctceRCLADVAAYALNRLPPRYIVSDEGEAYQKLESERQQLRAEILSAVREAIERVK 76
 
Name Accession Description Interval E-value
ComFB pfam10719
Late competence development protein ComFB; This family is conserved in bacteria. Some members, ...
 9-81 3.10e-07

Late competence development protein ComFB; This family is conserved in bacteria. Some members, with three conserved cysteines, are annotated as late competence development protein ComFB.


Pssm-ID: 463181  Cd Length: 79  Bit Score: 43.77  E-value: 3.10e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1310927124  9 YEVMLMEILAEegLMDELPT-----DYVADLACITLNQLPVRYIHHLVDTYFYGDYQEQDRMRNEIYQALEKSRAFLK 81
Cdd:pfam10719  1 MEELVLEELEE--QLEELPDyctceRCLADVAAYALNRLPPRYIVSDEGEAYQKLESERQQLRAEILSAVREAIERVK 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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