NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1327733582|ref|WP_102112932|]
View 

DUF962 domain-containing protein [Niveispirillum cyanobacteriorum]

Protein Classification

DUF962 domain-containing protein( domain architecture ID 10008607)

DUF962 domain-containing protein similar to Saccharomyces cerevisiae endoplasmic reticulum membrane protein YGL010W, which may be non-essential for cell growth

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
MPO1 COG4539
2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids) [Lipid transport and ...
9-158 1.12e-51

2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids) [Lipid transport and metabolism];


:

Pssm-ID: 443605  Cd Length: 153  Bit Score: 162.66  E-value: 1.12e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327733582   9 RLARSMAFYSAYHRHPHNRLTHYFGVPTIVFAVMLGLSYIPVPLGGMQVSVALILMAVLAAYYVYLDPMIGGTLAALSVP 88
Cdd:COG4539     3 SLDDLLAEYAEYHRNPTNIATHFIGVPLIVFSVLALLWRIPLPVGGLPLTWATLAALAALLYYLRLSLRLGLGMLLLLAL 82
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1327733582  89 FLMLADHV-TTLPGQTAAIIGAVTFIGGWAVQLLGHKFEGNKPALTANLLQIFVAPLFLVAEAYFALGLRK 158
Cdd:COG4539    83 CLLLAELLaAALPTALWLWIALGLFVVGWIGQFIGHKIEGKKPSFLDDLQFLLIGPLFVLAELLFALGLRY 153
 
Name Accession Description Interval E-value
MPO1 COG4539
2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids) [Lipid transport and ...
9-158 1.12e-51

2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids) [Lipid transport and metabolism];


Pssm-ID: 443605  Cd Length: 153  Bit Score: 162.66  E-value: 1.12e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327733582   9 RLARSMAFYSAYHRHPHNRLTHYFGVPTIVFAVMLGLSYIPVPLGGMQVSVALILMAVLAAYYVYLDPMIGGTLAALSVP 88
Cdd:COG4539     3 SLDDLLAEYAEYHRNPTNIATHFIGVPLIVFSVLALLWRIPLPVGGLPLTWATLAALAALLYYLRLSLRLGLGMLLLLAL 82
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1327733582  89 FLMLADHV-TTLPGQTAAIIGAVTFIGGWAVQLLGHKFEGNKPALTANLLQIFVAPLFLVAEAYFALGLRK 158
Cdd:COG4539    83 CLLLAELLaAALPTALWLWIALGLFVVGWIGQFIGHKIEGKKPSFLDDLQFLLIGPLFVLAELLFALGLRY 153
Mpo1-like pfam06127
2-hydroxy-palmitic acid dioxygenase Mpo1-like; Budding yeast Mpo1 is a dioxygenase that ...
10-154 6.81e-10

2-hydroxy-palmitic acid dioxygenase Mpo1-like; Budding yeast Mpo1 is a dioxygenase that catalyzes the alpha-oxidation of a 2-hydroxy fatty acid in an Fe2+-dependent manner. This entry also includes Mpo1 homologs from bacteria, fungi and plants. Their function is not clear.


Pssm-ID: 377609  Cd Length: 95  Bit Score: 53.72  E-value: 6.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327733582  10 LARSMAFYSAYHRHPHNRLTHYFGVPTIVFAVMLGLSYIPvplggmqvsvalilmavlaayyvyldpmiggtlaalsvpf 89
Cdd:pfam06127   4 FAEFYPFYLSEHSNPTNRRLHFIGTPLVLLTLVLLLLRGN---------------------------------------- 43
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1327733582  90 lmladhvttlpgqtaAIIGAVTFIGGWAVQLLGHK-FEGNKPALTANLLQIFVA-PLFLVAEAYFAL 154
Cdd:pfam06127  44 ---------------WWLLLAAPVAGYGFAWVGHFfFEKNRPATFKYPLWSLLGdPVMVLDELTGKL 95
 
Name Accession Description Interval E-value
MPO1 COG4539
2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids) [Lipid transport and ...
9-158 1.12e-51

2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids) [Lipid transport and metabolism];


Pssm-ID: 443605  Cd Length: 153  Bit Score: 162.66  E-value: 1.12e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327733582   9 RLARSMAFYSAYHRHPHNRLTHYFGVPTIVFAVMLGLSYIPVPLGGMQVSVALILMAVLAAYYVYLDPMIGGTLAALSVP 88
Cdd:COG4539     3 SLDDLLAEYAEYHRNPTNIATHFIGVPLIVFSVLALLWRIPLPVGGLPLTWATLAALAALLYYLRLSLRLGLGMLLLLAL 82
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1327733582  89 FLMLADHV-TTLPGQTAAIIGAVTFIGGWAVQLLGHKFEGNKPALTANLLQIFVAPLFLVAEAYFALGLRK 158
Cdd:COG4539    83 CLLLAELLaAALPTALWLWIALGLFVVGWIGQFIGHKIEGKKPSFLDDLQFLLIGPLFVLAELLFALGLRY 153
Mpo1-like pfam06127
2-hydroxy-palmitic acid dioxygenase Mpo1-like; Budding yeast Mpo1 is a dioxygenase that ...
10-154 6.81e-10

2-hydroxy-palmitic acid dioxygenase Mpo1-like; Budding yeast Mpo1 is a dioxygenase that catalyzes the alpha-oxidation of a 2-hydroxy fatty acid in an Fe2+-dependent manner. This entry also includes Mpo1 homologs from bacteria, fungi and plants. Their function is not clear.


Pssm-ID: 377609  Cd Length: 95  Bit Score: 53.72  E-value: 6.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327733582  10 LARSMAFYSAYHRHPHNRLTHYFGVPTIVFAVMLGLSYIPvplggmqvsvalilmavlaayyvyldpmiggtlaalsvpf 89
Cdd:pfam06127   4 FAEFYPFYLSEHSNPTNRRLHFIGTPLVLLTLVLLLLRGN---------------------------------------- 43
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1327733582  90 lmladhvttlpgqtaAIIGAVTFIGGWAVQLLGHK-FEGNKPALTANLLQIFVA-PLFLVAEAYFAL 154
Cdd:pfam06127  44 ---------------WWLLLAAPVAGYGFAWVGHFfFEKNRPATFKYPLWSLLGdPVMVLDELTGKL 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH