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Conserved domains on  [gi|1330287576|ref|WP_102438396|]
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NAD(P)H-dependent oxidoreductase [Vibrio lentus]

Protein Classification

NADPH-dependent FMN reductase family protein( domain architecture ID 325)

NADPH-dependent FMN reductase family protein contains a flavodoxin-like fold, which is characterized by an open twisted/alpha beta structure consisting of five parallel beta-sheets connected by alpha-helices which surround the sheet

CATH:  3.40.50.360
Gene Ontology:  GO:0010181
SCOP:  3001217

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FMN_red super family cl00438
NADPH-dependent FMN reductase;
2-167 2.18e-43

NADPH-dependent FMN reductase;


The actual alignment was detected with superfamily member PRK04930:

Pssm-ID: 469770 [Multi-domain]  Cd Length: 184  Bit Score: 142.83  E-value: 2.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   2 KTTVIFAHPDVENgSIGNKIVLDALNDTTSVEVRELYKMYPNRIVDVEVEQQALLNTDVIVLQFPFYWFGVPSLLKEWMD 81
Cdd:PRK04930    7 KVLLLYAHPESQD-SVANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLYTYSCPALLKEWLD 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  82 TVLTHSFAYGPDADHLKGKQLLLSTTVGGREELYSATGAHLYAVEDYLKPFYRLASATGMTFLKPEISYGvSYNPSVENR 161
Cdd:PRK04930   86 RVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYW-ARRQSPEEL 164

                  ....*.
gi 1330287576 162 AERDRA 167
Cdd:PRK04930  165 ASHARA 170
 
Name Accession Description Interval E-value
PRK04930 PRK04930
glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
2-167 2.18e-43

glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional


Pssm-ID: 179895 [Multi-domain]  Cd Length: 184  Bit Score: 142.83  E-value: 2.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   2 KTTVIFAHPDVENgSIGNKIVLDALNDTTSVEVRELYKMYPNRIVDVEVEQQALLNTDVIVLQFPFYWFGVPSLLKEWMD 81
Cdd:PRK04930    7 KVLLLYAHPESQD-SVANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLYTYSCPALLKEWLD 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  82 TVLTHSFAYGPDADHLKGKQLLLSTTVGGREELYSATGAHLYAVEDYLKPFYRLASATGMTFLKPEISYGvSYNPSVENR 161
Cdd:PRK04930   86 RVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYW-ARRQSPEEL 164

                  ....*.
gi 1330287576 162 AERDRA 167
Cdd:PRK04930  165 ASHARA 170
Flavodoxin_2 pfam02525
Flavodoxin-like fold; This family consists of a domain with a flavodoxin-like fold. The family ...
1-163 4.35e-43

Flavodoxin-like fold; This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.


Pssm-ID: 426816 [Multi-domain]  Cd Length: 193  Bit Score: 142.47  E-value: 4.35e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   1 MKTTVIFAHPDVE-NGSIGNKIVLDALNDT-TSVEVRELYKM--------------YPNRIVDVEVEQQALLNTDVIVLQ 64
Cdd:pfam02525   1 MKILIINAHPRPGsFSSRLADALVEALKAAgHEVTVRDLYALflpvldaedladltYPQGAADVESEQEELLAADVIVFQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  65 FPFYWFGVPSLLKEWMDTVLTHSFAY-----GPDADHLKGKQLLLSTTVGGREELYSATGAHLYAVEDYLKPFYRLASAT 139
Cdd:pfam02525  81 FPLYWFSVPALLKGWIDRVLRAGFAFkyeegGPGGGGLLGKKVLVIVTTGGPEYAYGKGGYNGFSLDELLPYLRGILGFC 160
                         170       180
                  ....*....|....*....|....
gi 1330287576 140 GMTFLKPEISYGVSYNPSVENRAE 163
Cdd:pfam02525 161 GITDLPPFAVEGTAGPEDEAALAE 184
MdaB COG2249
Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction ...
2-183 3.17e-40

Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only];


Pssm-ID: 441850 [Multi-domain]  Cd Length: 190  Bit Score: 134.97  E-value: 3.17e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   2 KTTVIFAHPDveNGSIgNKIVLDALNDT-----TSVEVRELYKM-YPNRIV------------DVEVEQQALLNTDVIVL 63
Cdd:COG2249     1 KILIIYAHPD--PSSF-NAALAEAAAEGleaagHEVTVHDLYAEgFDPVLSaadfyrdgplpiDVAAEQELLLWADHLVF 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  64 QFPFYWFGVPSLLKEWMDTVLTHSFAYGPDA----DHLKGKQLLLSTTVGGREELYSATGAHLYaVEDYLkpFYRLASAT 139
Cdd:COG2249    78 QFPLWWYSMPALLKGWIDRVLTPGFAYGYGGgypgGLLKGKKALLVVTTGGPEEAYSRLGYGGP-IEELL--FRGTLGYC 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1330287576 140 GMTFLKPEISYGvsynpsVENRAERDRAANIanEHACRLIERIA 183
Cdd:COG2249   155 GMKVLPPFVLYG------VDRSSDEERAAWL--ERVRELLAALA 190
 
Name Accession Description Interval E-value
PRK04930 PRK04930
glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
2-167 2.18e-43

glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional


Pssm-ID: 179895 [Multi-domain]  Cd Length: 184  Bit Score: 142.83  E-value: 2.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   2 KTTVIFAHPDVENgSIGNKIVLDALNDTTSVEVRELYKMYPNRIVDVEVEQQALLNTDVIVLQFPFYWFGVPSLLKEWMD 81
Cdd:PRK04930    7 KVLLLYAHPESQD-SVANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLYTYSCPALLKEWLD 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  82 TVLTHSFAYGPDADHLKGKQLLLSTTVGGREELYSATGAHLYAVEDYLKPFYRLASATGMTFLKPEISYGvSYNPSVENR 161
Cdd:PRK04930   86 RVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYW-ARRQSPEEL 164

                  ....*.
gi 1330287576 162 AERDRA 167
Cdd:PRK04930  165 ASHARA 170
Flavodoxin_2 pfam02525
Flavodoxin-like fold; This family consists of a domain with a flavodoxin-like fold. The family ...
1-163 4.35e-43

Flavodoxin-like fold; This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.


Pssm-ID: 426816 [Multi-domain]  Cd Length: 193  Bit Score: 142.47  E-value: 4.35e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   1 MKTTVIFAHPDVE-NGSIGNKIVLDALNDT-TSVEVRELYKM--------------YPNRIVDVEVEQQALLNTDVIVLQ 64
Cdd:pfam02525   1 MKILIINAHPRPGsFSSRLADALVEALKAAgHEVTVRDLYALflpvldaedladltYPQGAADVESEQEELLAADVIVFQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  65 FPFYWFGVPSLLKEWMDTVLTHSFAY-----GPDADHLKGKQLLLSTTVGGREELYSATGAHLYAVEDYLKPFYRLASAT 139
Cdd:pfam02525  81 FPLYWFSVPALLKGWIDRVLRAGFAFkyeegGPGGGGLLGKKVLVIVTTGGPEYAYGKGGYNGFSLDELLPYLRGILGFC 160
                         170       180
                  ....*....|....*....|....
gi 1330287576 140 GMTFLKPEISYGVSYNPSVENRAE 163
Cdd:pfam02525 161 GITDLPPFAVEGTAGPEDEAALAE 184
MdaB COG2249
Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction ...
2-183 3.17e-40

Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only];


Pssm-ID: 441850 [Multi-domain]  Cd Length: 190  Bit Score: 134.97  E-value: 3.17e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   2 KTTVIFAHPDveNGSIgNKIVLDALNDT-----TSVEVRELYKM-YPNRIV------------DVEVEQQALLNTDVIVL 63
Cdd:COG2249     1 KILIIYAHPD--PSSF-NAALAEAAAEGleaagHEVTVHDLYAEgFDPVLSaadfyrdgplpiDVAAEQELLLWADHLVF 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  64 QFPFYWFGVPSLLKEWMDTVLTHSFAYGPDA----DHLKGKQLLLSTTVGGREELYSATGAHLYaVEDYLkpFYRLASAT 139
Cdd:COG2249    78 QFPLWWYSMPALLKGWIDRVLTPGFAYGYGGgypgGLLKGKKALLVVTTGGPEEAYSRLGYGGP-IEELL--FRGTLGYC 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1330287576 140 GMTFLKPEISYGvsynpsVENRAERDRAANIanEHACRLIERIA 183
Cdd:COG2249   155 GMKVLPPFVLYG------VDRSSDEERAAWL--ERVRELLAALA 190
PRK00871 PRK00871
glutathione-regulated potassium-efflux system oxidoreductase KefF;
5-146 9.37e-32

glutathione-regulated potassium-efflux system oxidoreductase KefF;


Pssm-ID: 234852  Cd Length: 176  Bit Score: 112.96  E-value: 9.37e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   5 VIFAHPDVENgSIGNKIVLDALNDTTSVEVRELYKMYPNRIVDVEVEQQALLNTDVIVLQFPFYWFGVPSLLKEWMDTVL 84
Cdd:PRK00871    4 IIYAHPYPHH-SHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVL 82
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1330287576  85 THSFAYGPDADHLKGKQLLLSTTVGGREELYsATGAHLyAVEDYLKPFYRLASATGMTFLKP 146
Cdd:PRK00871   83 SHGWAYGHGGTALHGKHLLWAVTTGGGESHF-EIGAHP-GFDVLSQPLQATALYCGLNWLPP 142
AzoR COG1182
FMN-dependent NADH-azoreductase [Energy production and conversion];
1-130 1.17e-08

FMN-dependent NADH-azoreductase [Energy production and conversion];


Pssm-ID: 440795 [Multi-domain]  Cd Length: 205  Bit Score: 52.44  E-value: 1.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   1 MKTTVIFAHPDVENG---SIGNKIV--LDALNDTTSVEVRELYKMYPNRIvDVEV-------------EQQA-------- 54
Cdd:COG1182     2 MKLLHIDSSPRGEGSvsrRLADAFVaaLRAAHPDDEVTYRDLAAEPLPHL-DGAWlaafftpaegrtpEQQAalalsdel 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  55 ---LLNTDVIVLQFPFYWFGVPSLLKEWMDTVLT--HSFAYGPDADH--LKGKQLLLSTTVGGreeLYSATGAHLY-AVE 126
Cdd:COG1182    81 ideLLAADVIVIGAPMYNFGIPSQLKAWIDHIARagRTFRYTENGPVglLTGKKAVVITARGG---VYSGGPAAGMdFQT 157

                  ....
gi 1330287576 127 DYLK 130
Cdd:COG1182   158 PYLR 161
PRK09739 PRK09739
NAD(P)H oxidoreductase;
1-113 9.31e-08

NAD(P)H oxidoreductase;


Pssm-ID: 236620 [Multi-domain]  Cd Length: 199  Bit Score: 50.09  E-value: 9.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576   1 MKTTVIFAHPDVEN--GSIGNKIVLDALNDTTSVEVRELYKMY---------------PNRIVDVEVEQQA--LLNTDVI 61
Cdd:PRK09739    4 MRIYLVWAHPRHDSltAKVAEAIHQRAQERGHQVEELDLYRSGfdpvltpedepdwknPDKRYSPEVHQLYseLLEHDAL 83
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1330287576  62 VLQFPFYWFGVPSLLKEWMDTVLTHSFAYGpDADHLKGKQLLLSTTVGGREE 113
Cdd:PRK09739   84 VFVFPLWWYSFPAMLKGYIDRVWNNGLAYG-DGHKLPFNKVRWVALVGGSKE 134
PRK00170 PRK00170
azoreductase; Reviewed
55-171 1.62e-05

azoreductase; Reviewed


Pssm-ID: 234675 [Multi-domain]  Cd Length: 201  Bit Score: 43.73  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  55 LLNTDVIVLQFPFYWFGVPSLLKEWMDTVLT--HSFAY---GPDAdHLKGKQLLLSTTVGGreeLYSATGAHLyaVEDYL 129
Cdd:PRK00170   84 FLAADKIVIAAPMYNFSIPTQLKAYIDLIARagKTFRYtenGPVG-LVTGKKALLITSRGG---IHKDGPTDM--GVPYL 157
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1330287576 130 KPFYRLASATGMTFLKPEisyGVSYNPSVENRAERDRAANIA 171
Cdd:PRK00170  158 KTFLGFIGITDVEFVFAE---GHNYGPEKAAKIISAAKAAAD 196
WrbA COG0655
Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and ...
47-183 8.41e-04

Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase [Energy production and conversion];


Pssm-ID: 440420 [Multi-domain]  Cd Length: 181  Bit Score: 38.37  E-value: 8.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1330287576  47 DVEVEQQALLNTDVIVLQFPFYWFGVPSLLKEWMDTvlthSFAYGPDADHLKGKQLLLSTTVGGREElysatgahlyavE 126
Cdd:COG0655    60 DMNAIYEKLLEADGIIFGSPTYFGNMSAQLKAFIDR----LYALWAKGKLLKGKVGAVFTTGGHGGA------------E 123
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1330287576 127 DYLKPFYRLASATGMTFLkPEISYGVSYNPSVENRAERD--RAANIANEHACRLIERIA 183
Cdd:COG0655   124 ATLLSLNTFLLHHGMIVV-GLPPYGAVGGGGPGDVLDEEglATARELGKRLAELAKKLK 181
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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