|
Name |
Accession |
Description |
Interval |
E-value |
| OpuBB |
COG1174 |
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
54-249 |
1.46e-73 |
|
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 223.01 E-value: 1.46e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 54 RRADFLTLLGQHVLVVGIASLLAVALGVSAAVAVTRKfgRDFLPLVSQLASIGQTFPPVAVLALAVPALGFGTLPIIVAL 133
Cdd:COG1174 12 NRDGILALLLEHLLLVLLALLIALLIAVPLGILITRR--RRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 134 LLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASNLGDPI 213
Cdd:COG1174 90 VLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLI 169
|
170 180 190
....*....|....*....|....*....|....*.
gi 1341972487 214 ISGIVNGNTAYIVQGAVLIGLLALAVDSLFERLQRR 249
Cdd:COG1174 170 FDGLQLNNTALILAGAILVALLALLVDLLLALLERL 205
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
76-248 |
1.27e-16 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 75.03 E-value: 1.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 76 AVALGVSAAVAVTRKFGRDFLPLVSqlasIGQTFPPVAVLALAVPA-----LGFGTLPIIVALLLYGLLPIVRNTLAGID 150
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLID----LLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 151 SIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASN-LGDPIISGIVNGNTAYIVQGA 229
Cdd:pfam00528 77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPgLGLLLIEAILGYDYPEIQGPV 156
|
170
....*....|....*....
gi 1341972487 230 VLIGLLALAVDSLFERLQR 248
Cdd:pfam00528 157 LAAALILLLLNLLVDILQR 175
|
|
| PRK10952 |
PRK10952 |
proline/glycine betaine ABC transporter permease ProW; |
107-248 |
6.73e-12 |
|
proline/glycine betaine ABC transporter permease ProW;
Pssm-ID: 236805 Cd Length: 355 Bit Score: 64.34 E-value: 6.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 107 QTFPPVAVLALAVPALGFGTLPIIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAG 186
Cdd:PRK10952 189 QTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAG 268
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1341972487 187 IRTSVTINIATAALGTTVGASNLGDPIISGIVNGNTAYIVQGAVLIGLLALAVDSLFERLQR 248
Cdd:PRK10952 269 VNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGR 330
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
62-242 |
1.56e-11 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 61.53 E-value: 1.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 62 LGQHVLVVGIASLLAVALGVSAAVAVTRKFGRDFLPLVSqLASIGQTFPPVAVLALAVPALG---------FGTLPIIVA 132
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRR-IIDLLLSLPSLVLGLLLVLLFGvllgwgilpGLGLPALIL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 133 LLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASNLGDP 212
Cdd:cd06261 80 ALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159
|
170 180 190
....*....|....*....|....*....|.
gi 1341972487 213 -IISGIVNGNTAYIVQGAVLIGLLALAVDSL 242
Cdd:cd06261 160 gTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
71-249 |
4.40e-08 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 52.54 E-value: 4.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 71 IASLLAVALGVSAAVAVTRkfGRDFLPLVSQLASIGQTFPPVAVLALAVPALGFGTLPIIVALLLYGLLPIVRNTLAGID 150
Cdd:TIGR01097 73 LAAVLAVPLALLAARNITP--SPWLYGLARLLLNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 151 SIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASNLGDPIISGIvnGNTAYIVQGAV 230
Cdd:TIGR01097 151 EVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIGLELDTAI--GLFDYDEVSAI 228
|
170 180
....*....|....*....|.
gi 1341972487 231 LIGLLAL--AVDSLFERLQRR 249
Cdd:TIGR01097 229 ILVILVVvvIIDLISARLRRR 249
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| OpuBB |
COG1174 |
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ... |
54-249 |
1.46e-73 |
|
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440787 [Multi-domain] Cd Length: 212 Bit Score: 223.01 E-value: 1.46e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 54 RRADFLTLLGQHVLVVGIASLLAVALGVSAAVAVTRKfgRDFLPLVSQLASIGQTFPPVAVLALAVPALGFGTLPIIVAL 133
Cdd:COG1174 12 NRDGILALLLEHLLLVLLALLIALLIAVPLGILITRR--RRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 134 LLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASNLGDPI 213
Cdd:COG1174 90 VLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLI 169
|
170 180 190
....*....|....*....|....*....|....*.
gi 1341972487 214 ISGIVNGNTAYIVQGAVLIGLLALAVDSLFERLQRR 249
Cdd:COG1174 170 FDGLQLNNTALILAGAILVALLALLVDLLLALLERL 205
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
54-249 |
5.00e-25 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 99.45 E-value: 5.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 54 RRADFLTLLGQHVLVVGIASLLAVALGVSAAVAVTR-KFGRDFLplvSQLASIGQTFPPVAVLALAVPALGFGTLPIIVA 132
Cdd:COG0600 55 ASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLsRLLRRLL---DPLLVFLRPIPPLALAPLLILWFGIGEASKIFV 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 133 LLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASN-LGD 211
Cdd:COG0600 132 IFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSgLGY 211
|
170 180 190
....*....|....*....|....*....|....*...
gi 1341972487 212 PIISGIVNGNTAYIVQGAVLIGLLALAVDSLFERLQRR 249
Cdd:COG0600 212 LILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLERR 249
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
76-248 |
1.27e-16 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 75.03 E-value: 1.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 76 AVALGVSAAVAVTRKFGRDFLPLVSqlasIGQTFPPVAVLALAVPA-----LGFGTLPIIVALLLYGLLPIVRNTLAGID 150
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLID----LLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 151 SIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASN-LGDPIISGIVNGNTAYIVQGA 229
Cdd:pfam00528 77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPgLGLLLIEAILGYDYPEIQGPV 156
|
170
....*....|....*....
gi 1341972487 230 VLIGLLALAVDSLFERLQR 248
Cdd:pfam00528 157 LAAALILLLLNLLVDILQR 175
|
|
| PRK10952 |
PRK10952 |
proline/glycine betaine ABC transporter permease ProW; |
107-248 |
6.73e-12 |
|
proline/glycine betaine ABC transporter permease ProW;
Pssm-ID: 236805 Cd Length: 355 Bit Score: 64.34 E-value: 6.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 107 QTFPPVAVLALAVPALGFGTLPIIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAG 186
Cdd:PRK10952 189 QTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAG 268
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1341972487 187 IRTSVTINIATAALGTTVGASNLGDPIISGIVNGNTAYIVQGAVLIGLLALAVDSLFERLQR 248
Cdd:PRK10952 269 VNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGR 330
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
62-242 |
1.56e-11 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 61.53 E-value: 1.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 62 LGQHVLVVGIASLLAVALGVSAAVAVTRKFGRDFLPLVSqLASIGQTFPPVAVLALAVPALG---------FGTLPIIVA 132
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRR-IIDLLLSLPSLVLGLLLVLLFGvllgwgilpGLGLPALIL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 133 LLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASNLGDP 212
Cdd:cd06261 80 ALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159
|
170 180 190
....*....|....*....|....*....|.
gi 1341972487 213 -IISGIVNGNTAYIVQGAVLIGLLALAVDSL 242
Cdd:cd06261 160 gTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
50-186 |
1.57e-11 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 62.44 E-value: 1.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 50 QVIYRRADFLTLLGQHVLVVGIASLLAVALGVSAAVAVTRKFGRdFLPLVSQLASIGQTFPPVAV-----LALAVPALGF 124
Cdd:COG1177 51 AELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFR-GRRLLLALLLLPLVVPGIVLgvallLLFSALGLSG 129
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1341972487 125 GTLPIIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAG 186
Cdd:COG1177 130 GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAG 191
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
55-186 |
4.62e-11 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 62.10 E-value: 4.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 55 RADFLTLLGQHVLVVGIASLLAVALGVSAAVAVTRKFGRdFLPLVSQLASIGQTFPPVaVLALAV--------PALGFGT 126
Cdd:COG1178 333 DPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGR-LARLLDRLAMLPYAVPGI-VLGLGLlllfnrplPLLLYGT 410
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1341972487 127 LPIIVALLLYGLLPI-VRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAG 186
Cdd:COG1178 411 LAILVLAYVVRFLPFaLRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAA 471
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
55-186 |
1.01e-09 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 58.25 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 55 RADFLTLLGQHVLVVGIASLLAVALGVSAAVAVTRK--FGRDF------LPLV--SQLASIG--QTFPPVAVLALAVPAL 122
Cdd:COG1178 49 DPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTdfPGRRLlrwlllLPLAlpPYVVALAwiALFGPNGLLNTLLRAL 128
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1341972487 123 G-------FGTLPIIVALLLYgLLPIV-RNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAG 186
Cdd:COG1178 129 FgleppdiYGLGGIILVLVLF-NYPYVyLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAG 199
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
71-249 |
4.40e-08 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 52.54 E-value: 4.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 71 IASLLAVALGVSAAVAVTRkfGRDFLPLVSQLASIGQTFPPVAVLALAVPALGFGTLPIIVALLLYGLLPIVRNTLAGID 150
Cdd:TIGR01097 73 LAAVLAVPLALLAARNITP--SPWLYGLARLLLNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 151 SIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASNLGDPIISGIvnGNTAYIVQGAV 230
Cdd:TIGR01097 151 EVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIGLELDTAI--GLFDYDEVSAI 228
|
170 180
....*....|....*....|.
gi 1341972487 231 LIGLLAL--AVDSLFERLQRR 249
Cdd:TIGR01097 229 ILVILVVvvIIDLISARLRRR 249
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
124-187 |
5.13e-08 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 52.44 E-value: 5.13e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1341972487 124 FGTLPIIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGI 187
Cdd:COG0555 134 FTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGF 197
|
|
| PRK10160 |
PRK10160 |
taurine ABC transporter permease TauC; |
71-249 |
1.23e-07 |
|
taurine ABC transporter permease TauC;
Pssm-ID: 182276 Cd Length: 275 Bit Score: 51.32 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 71 IASLLAVALGVSAAVAVtrKFGRDFLPLVSQLASIGQTFPPVAVLALAVPALGFGTLPIIVALLLYGLLPIVRNTLAGID 150
Cdd:PRK10160 89 LALLAAVVIGIPVGIAM--GLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVK 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 151 SIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGAS-NLGDPIISGIVNGNTAYIVQGA 229
Cdd:PRK10160 167 SAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATrGLGFMVQSAGEFLATDVVLAGI 246
|
170 180
....*....|....*....|
gi 1341972487 230 VLIGLLALAVDSLFERLQRR 249
Cdd:PRK10160 247 AVIAIIAFLLELGLRALQRR 266
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
66-249 |
2.45e-07 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 50.07 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 66 VLVVGIASLLAVALGVsaAVAVTRKFGRdflPLVSQLASIGQTF----PPVAVLAL---AVPALGFGTLPIIVALLLYGL 138
Cdd:COG0765 23 LLLTVLAIVLGLVLGL--LLALARLSPN---PVLRWLATAYVEFfrgtPLLVQLFFiyfGLPLLGIDLSPFVAAVIALTL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 139 L------PIVRntlAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASNLGDp 212
Cdd:COG0765 98 NsaaylaEIVR---AGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLVSVIGVPELTR- 173
|
170 180 190
....*....|....*....|....*....|....*..
gi 1341972487 213 iISGIVNGNTAYIVQGAVLIGLLALAVDSLFERLQRR 249
Cdd:COG0765 174 -AAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARR 209
|
|
| MetP |
COG2011 |
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ... |
56-211 |
2.83e-07 |
|
ABC-type methionine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 441614 Cd Length: 220 Bit Score: 49.67 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 56 ADFLTLLGQHVLVVGIASLLAVALGVSAAVA--VTRKFGRDFLPLVSQLAS----IGQTFPPVAVLALAVP---AL---G 123
Cdd:COG2011 10 PLLLQATGETLYMVGVSTLIAVLLGLPLGVLlvLTRPGGLLPNPVLYRVLGvivnIFRSIPFIILLVALIPltrLIvgtS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 124 FGTLPIIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIrTSVTINI--ATAALG 201
Cdd:COG2011 90 IGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGL-TVTLISLigYSAMAG 168
|
170
....*....|
gi 1341972487 202 tTVGASNLGD 211
Cdd:COG2011 169 -AVGGGGLGD 177
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
71-249 |
4.75e-07 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 49.31 E-value: 4.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 71 IASLLAVALGVSAAVAVTRKFGrdFLPLVSQLASIGQTFPPVAVLALAVPALGFGTLPIIVALLLYGLLPIVRNTLAGID 150
Cdd:COG3639 66 LGAVLALPLAFLAARNLAPNPW--VRLLARRLLNVLRAIPELVWALIFVAAVGLGPFAGVLALAIHTIGFLGKLFAEAIE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 151 SIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILA--------GIRTSVTINIataalgttVGASNLGDPIISGIvnGNT 222
Cdd:COG3639 144 EIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLSytlyrfeiNIRAATVLGL--------VGAGGIGLLLNEAI--RLF 213
|
170 180
....*....|....*....|....*....
gi 1341972487 223 AYIVQGAVLIGLLAL--AVDSLFERLQRR 249
Cdd:COG3639 214 QYDEVAAILLVILVLvlLIDLLSARLRRR 242
|
|
| malG |
PRK10998 |
maltose ABC transporter permease MalG; |
59-200 |
1.24e-06 |
|
maltose ABC transporter permease MalG;
Pssm-ID: 182891 Cd Length: 296 Bit Score: 48.55 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 59 LTLLGQHVLVVGIASLLAVALGVSAAVAVTR-KFGRDFLPLVSQLasIGQTFPPV----AVLAL------AVPALGFGTL 127
Cdd:PRK10998 82 LLWLWNSVKVAGITAIGIVALSTTCAYAFARmRFKGKATLLKGML--IFQMFPAVlslvALYALfdrlgqYIPFIGLNTH 159
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1341972487 128 PIIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAP-----FILAGIRTSVTINIATAAL 200
Cdd:PRK10998 160 GGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPilavvFILSFIAAITEVPVASLLL 237
|
|
| MalG |
COG3833 |
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ... |
57-185 |
2.51e-05 |
|
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];
Pssm-ID: 443045 [Multi-domain] Cd Length: 282 Bit Score: 44.37 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 57 DFLTLLGQHVLVVGIASLLAVALGVSAAVAVTR-KF-GRDFLpLVSQLasIGQTFPPV-AVLALAVPALGFGTLPIIVAL 133
Cdd:COG3833 70 PFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRfRFkGRKAG-LLALL--LLQMFPAFlALVALYLLLSALGLLNTLLGL 146
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1341972487 134 LLY---GLLPIvrNT--LAG-IDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPfILA 185
Cdd:COG3833 147 ILVylgGAIPF--NTwlMKGyFDTIPKELDEAAKIDGASHFQIFFRIILPLAKP-ILA 201
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
132-187 |
3.56e-05 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 43.98 E-value: 3.56e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1341972487 132 ALLLYGLLPIvrntLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGI 187
Cdd:COG1176 164 VYLPFMVLPL----YAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGS 215
|
|
| ssuC |
PRK11365 |
aliphatic sulfonate ABC transporter permease SsuC; |
110-207 |
5.69e-05 |
|
aliphatic sulfonate ABC transporter permease SsuC;
Pssm-ID: 183100 Cd Length: 263 Bit Score: 43.39 E-value: 5.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 110 PPVAVLALAVPALGFGTLPIIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRT 189
Cdd:PRK11365 108 PHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRF 187
|
90
....*....|....*...
gi 1341972487 190 SVTINIATAALGTTVGAS 207
Cdd:PRK11365 188 ALGLMWLTLIVAETISAN 205
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
66-198 |
7.05e-05 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 43.18 E-value: 7.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 66 VLVVGIASLLAVALGVSAAVavtrkFGRDFLPLVSQLASIGQTFPPVAVLALAVPALGFGTLPIIVALLLYGLLPIVRNT 145
Cdd:COG1173 86 LLAVLIALVIGVLLGLLAGY-----FGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLV 160
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1341972487 146 LAGIDSIDPQVH-EAARAMGMTPWQVLRQVELPLAAPFILAgirtSVTINIATA 198
Cdd:COG1173 161 RAQVLSLREREYvEAARALGASPLRIIFRHILPNVLPPLIV----QATLGIASA 210
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
113-186 |
9.53e-05 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 42.68 E-value: 9.53e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1341972487 113 AVLALAVPALGFGTLP--IIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAG 186
Cdd:PRK15050 146 RLFGLEAPPLDFLYSPggVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAG 221
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
122-195 |
1.63e-04 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 41.89 E-value: 1.63e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1341972487 122 LGFGTLpiIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINI 195
Cdd:PRK09500 125 LGFWSL--LFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSL 196
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
142-187 |
1.68e-04 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 41.83 E-value: 1.68e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1341972487 142 VRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGI 187
Cdd:PRK09421 108 VRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGT 153
|
|
| PRK10782 |
PRK10782 |
D-methionine ABC transporter permease MetI; |
141-210 |
3.24e-04 |
|
D-methionine ABC transporter permease MetI;
Pssm-ID: 182726 Cd Length: 217 Bit Score: 40.87 E-value: 3.24e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 141 IVRNTLAGIDSidpQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTVGASNLG 210
Cdd:PRK10782 107 MVENALLEIPT---GLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLG 173
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
127-192 |
1.47e-03 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 38.97 E-value: 1.47e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1341972487 127 LPIIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVT 192
Cdd:PRK10971 141 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFT 206
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
55-181 |
2.07e-03 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 38.54 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 55 RADFLTLLGQHVLVVGIASLLAVALGVSAAVAVTRK--FGRDFLPLvsqLASIGQTFPPVAVL----------------- 115
Cdd:COG0395 69 DGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFrfRGRKLLFL---LILATLMIPGQVLLiplyllfrqlgllntyw 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1341972487 116 ALAVPALGFGtLPIIVALLlygllpivRNTLAGI-DSIDpqvhEAARAMGMTPWQVLRQVELPLAAP 181
Cdd:COG0395 146 GLILPYLAFG-LPFGIFLL--------RQFFRSIpRELE----EAARIDGASEFRIFWRIVLPLSKP 199
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
56-184 |
2.57e-03 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 38.19 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 56 ADFLTLLGQHVLVVGIASLLAVALGVSAAVAVTRKF-GRD------FLPLVSQLASIGQTF-----PPVAVLALAVPALG 123
Cdd:COG1175 72 PRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLrGRGffrtlfFLPWVISPVVVALIWkwlfnPDYGLLNALLGALG 151
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1341972487 124 FGTLPIIV----ALLLYGLLPIVRNT-------LAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFIL 184
Cdd:COG1175 152 LEPINWLGdpslALPAVIIVTVWKGTgfnmlifLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTIL 223
|
|
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
147-204 |
4.02e-03 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 37.42 E-value: 4.02e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1341972487 147 AGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGIRTSVTINIATAALGTTV 204
Cdd:PRK15100 109 AAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATI 166
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
66-187 |
7.25e-03 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 36.86 E-value: 7.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341972487 66 VLVVGIASLLAVALGVSAAVAVTR---KFGRDFL-PLVSQLASI---------GQTFPPVAVLALAVPA---LGFGTL-- 127
Cdd:TIGR02138 69 LITSLIALLIAVPVGIGIAIFLSEiapKRVRSVLkPVVELLAGIpsvvygfwgLFVLVPFLKPHFQPFLgsnLGLIPLfg 148
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1341972487 128 -PIIVALLLYG--LLPIVRNTLAGIDSIDPQVH-EAARAMGMTPWQVLRQVELPLAAPFILAGI 187
Cdd:TIGR02138 149 gPILTAGIVLAimILPTIASISRDALRAVPRSYkEASYALGATKWETIRRVILPAARSGIVGAV 212
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
124-187 |
7.65e-03 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 36.53 E-value: 7.65e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1341972487 124 FGTLPIIVALLLYGLLPIVRNTLAGIDSIDPQVHEAARAMGMTPWQVLRQVELPLAAPFILAGI 187
Cdd:CHL00187 135 FTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGL 198
|
|
| |
