|
Name |
Accession |
Description |
Interval |
E-value |
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
4-223 |
3.80e-90 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 266.62 E-value: 3.80e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 4 LKSERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEAPGNLQLEESILEKSVKNVQEKRE 83
Cdd:COG1349 2 LAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSAAAEPPFAERETLNAEEKRA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 84 IAERAARQIVNGDVIFLDAGTTTGVLIDYLQQ-ENLTVVTNSIHHAVRLVER-KIKTIIIGGFVKQSTDASVGAVALEQI 161
Cdd:COG1349 82 IARAAASLIEDGDTIFLDAGTTTLALARALPDrRNLTVVTNSLNIANELAERpNIEVILLGGELRPSSGSLVGPLAEEAL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1353689567 162 RQLNFDKAFLGMNGID-KNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIE 223
Cdd:COG1349 162 RRFRADKAFLGASGIDaEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLS 224
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
76-228 |
3.31e-58 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 181.94 E-value: 3.31e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 76 KNVQEKREIAERAARQIVNGDVIFLDAGTTTGVLIDYLQ-QENLTVVTNSIHHAVRLVERK-IKTIIIGGFVKQSTDASV 153
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPdRRNLTVITNSLNIANELSEKPdIEVILLGGEVRPKTGAFV 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1353689567 154 GAVALEQIRQLNFDKAFLGMNGIDKNY-FTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIEKSNII 228
Cdd:pfam00455 81 GPLAEEFLRQFNVDKAFIGANGIDLEGgLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDAL 156
|
|
| TranRegGlpR_Halo |
NF041397 |
HTH-type transcriptional regulator GlpR; |
4-223 |
7.10e-55 |
|
HTH-type transcriptional regulator GlpR;
Pssm-ID: 469288 [Multi-domain] Cd Length: 253 Bit Score: 176.64 E-value: 7.10e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 4 LKSERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEAPGNLQLEESILEKSVKNVQEKRE 83
Cdd:NF041397 2 LPEERKRKIVELVTERDGCSVEELADELDVSKATIRRDLRDLEDRGLIERSHGGAVPVTSVGRERSYGQREVQNLEAKRA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 84 IAERAARQIVNGDVIFLDAGTTT-----GVLIDYlqqeNLTVVTNSIHHAVRLVERKIKTIIIGGFVKQSTDASVGAVAL 158
Cdd:NF041397 82 IAERAVEEIHDGQVVFFDAGTTTmevakRVPTDG----SFLAVTNSPLLALELAERDGEVKLTGGTLRPRTRALVGPTAE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1353689567 159 EQIRQLNFDKAFLGMNGIDKN-YFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIE 223
Cdd:NF041397 158 SFMERTNFDLLFLGTNGIDPDgGLTTPNEDEARMKELMVENAKRVVLVADGSKFGERSFVRFADLD 223
|
|
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
7-228 |
2.73e-37 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 131.35 E-value: 2.73e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 7 ERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEApGNLQLEESILEKSVKNVQEKREIAE 86
Cdd:PRK10434 5 QRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVL-NKEESDPPIDHKTLINTHKKELIAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 87 RAARQIVNGDVIFLDAGTTTGVLIDYLQQ-ENLTVVTNSIHHAVRLVER-KIKTIII--GGFVKQStdASV-GAVALEQI 161
Cdd:PRK10434 84 AAVSLIHDGDSIILDAGSTVLQMVPLLSRfNNITVMTNSLHIVNALSELdNEQTILMpgGTFRKKS--ASFhGQLAENAF 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1353689567 162 RQLNFDKAFLGMNGIDKNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIEKSNII 228
Cdd:PRK10434 162 EHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVDKL 228
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
6-227 |
1.27e-32 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 119.30 E-value: 1.27e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 6 SERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGA--EAPGNLQLEESILEKSVKNVQEKRE 83
Cdd:NF040755 5 SERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGAliNDGFIPGAEPSVEDKSRLNTAVKRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 84 IAERAARQIVNGDVIFLDAGTTTGVLIDYLQQ-ENLTVVTNSIHHAVRLVERK-IKTIIIGGFVKQSTDASVGAVALEQI 161
Cdd:NF040755 85 IAAAAAELIKPGDRVILDSGTTTYEIARHLKQhQDVVVMTNGLNVANELLEAEgVEVLMTGGHLRRQSLSFYGDQAEQSL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1353689567 162 RQLNFDKAFLGMNGID-KNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVaaIEKSNI 227
Cdd:NF040755 165 QNYHFDKLFLGVDGFDlERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKI--RDTGRI 229
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
8-59 |
4.41e-15 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 67.25 E-value: 4.41e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1353689567 8 RKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAE 59
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAV 52
|
|
| Tau138_eWH |
cd16169 |
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits ... |
8-55 |
4.13e-03 |
|
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits of the tauB subcomplex of yeast transcription factor IIIC. This extended winged-helix domain of tau138 appears to interact with the TPR (tetratricopeptide repeat) array of tauA subunit tau131, and may therefore play a role in linking tauA, tauB, and TFIIIB to regulate the formation of the RNA polymerase III pre-initiation complex.
Pssm-ID: 320085 Cd Length: 97 Bit Score: 35.64 E-value: 4.13e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1353689567 8 RKQIILDRIHSQQFV------RLEELIEVLDTSES----TVRRDLDELENEGKLRRVH 55
Cdd:cd16169 7 RENEILEVLKELGGVvnlekkFLEEHEKLLGSLTRmdkkTLKRDLNKLEEEGKLKVIT 64
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
4-223 |
3.80e-90 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 266.62 E-value: 3.80e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 4 LKSERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEAPGNLQLEESILEKSVKNVQEKRE 83
Cdd:COG1349 2 LAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSAAAEPPFAERETLNAEEKRA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 84 IAERAARQIVNGDVIFLDAGTTTGVLIDYLQQ-ENLTVVTNSIHHAVRLVER-KIKTIIIGGFVKQSTDASVGAVALEQI 161
Cdd:COG1349 82 IARAAASLIEDGDTIFLDAGTTTLALARALPDrRNLTVVTNSLNIANELAERpNIEVILLGGELRPSSGSLVGPLAEEAL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1353689567 162 RQLNFDKAFLGMNGID-KNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIE 223
Cdd:COG1349 162 RRFRADKAFLGASGIDaEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLS 224
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
76-228 |
3.31e-58 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 181.94 E-value: 3.31e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 76 KNVQEKREIAERAARQIVNGDVIFLDAGTTTGVLIDYLQ-QENLTVVTNSIHHAVRLVERK-IKTIIIGGFVKQSTDASV 153
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPdRRNLTVITNSLNIANELSEKPdIEVILLGGEVRPKTGAFV 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1353689567 154 GAVALEQIRQLNFDKAFLGMNGIDKNY-FTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIEKSNII 228
Cdd:pfam00455 81 GPLAEEFLRQFNVDKAFIGANGIDLEGgLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDAL 156
|
|
| TranRegGlpR_Halo |
NF041397 |
HTH-type transcriptional regulator GlpR; |
4-223 |
7.10e-55 |
|
HTH-type transcriptional regulator GlpR;
Pssm-ID: 469288 [Multi-domain] Cd Length: 253 Bit Score: 176.64 E-value: 7.10e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 4 LKSERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEAPGNLQLEESILEKSVKNVQEKRE 83
Cdd:NF041397 2 LPEERKRKIVELVTERDGCSVEELADELDVSKATIRRDLRDLEDRGLIERSHGGAVPVTSVGRERSYGQREVQNLEAKRA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 84 IAERAARQIVNGDVIFLDAGTTT-----GVLIDYlqqeNLTVVTNSIHHAVRLVERKIKTIIIGGFVKQSTDASVGAVAL 158
Cdd:NF041397 82 IAERAVEEIHDGQVVFFDAGTTTmevakRVPTDG----SFLAVTNSPLLALELAERDGEVKLTGGTLRPRTRALVGPTAE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1353689567 159 EQIRQLNFDKAFLGMNGIDKN-YFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIE 223
Cdd:NF041397 158 SFMERTNFDLLFLGTNGIDPDgGLTTPNEDEARMKELMVENAKRVVLVADGSKFGERSFVRFADLD 223
|
|
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
7-228 |
2.73e-37 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 131.35 E-value: 2.73e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 7 ERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEApGNLQLEESILEKSVKNVQEKREIAE 86
Cdd:PRK10434 5 QRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVL-NKEESDPPIDHKTLINTHKKELIAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 87 RAARQIVNGDVIFLDAGTTTGVLIDYLQQ-ENLTVVTNSIHHAVRLVER-KIKTIII--GGFVKQStdASV-GAVALEQI 161
Cdd:PRK10434 84 AAVSLIHDGDSIILDAGSTVLQMVPLLSRfNNITVMTNSLHIVNALSELdNEQTILMpgGTFRKKS--ASFhGQLAENAF 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1353689567 162 RQLNFDKAFLGMNGIDKNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIEKSNII 228
Cdd:PRK10434 162 EHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVDKL 228
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
6-227 |
1.27e-32 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 119.30 E-value: 1.27e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 6 SERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGA--EAPGNLQLEESILEKSVKNVQEKRE 83
Cdd:NF040755 5 SERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGAliNDGFIPGAEPSVEDKSRLNTAVKRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 84 IAERAARQIVNGDVIFLDAGTTTGVLIDYLQQ-ENLTVVTNSIHHAVRLVERK-IKTIIIGGFVKQSTDASVGAVALEQI 161
Cdd:NF040755 85 IAAAAAELIKPGDRVILDSGTTTYEIARHLKQhQDVVVMTNGLNVANELLEAEgVEVLMTGGHLRRQSLSFYGDQAEQSL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1353689567 162 RQLNFDKAFLGMNGID-KNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVaaIEKSNI 227
Cdd:NF040755 165 QNYHFDKLFLGVDGFDlERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKI--RDTGRI 229
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
5-242 |
1.75e-31 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 116.11 E-value: 1.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 5 KSERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEAPGNlQLEESILEKSVKNVQEKREI 84
Cdd:PRK10906 3 QTQRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALPSS-SVNTPWHDRKATQTEEKERI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 85 AERAARQIVNGDVIFLDAGTT-TGVLIDYLQQENLTVVTNSIHHAVRLVERK-IKTIIIGGFVKQSTDASVGAVALEQIR 162
Cdd:PRK10906 82 ARKVASQIPNGATLFIDIGTTpEAVAHALLNHSNLRIVTNNLNVANTLMAKEdFRIILAGGELRSRDGGIIGEATLDFIS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 163 QLNFDKAFLGMNGIDKN-YFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIEKSNIIC--QSSESSLLDI 239
Cdd:PRK10906 162 QFRLDFGILGISGIDSDgSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYtdQLPPASVMQV 241
|
...
gi 1353689567 240 IKE 242
Cdd:PRK10906 242 IED 244
|
|
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
6-228 |
7.97e-28 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 107.25 E-value: 7.97e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 6 SERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAE--APGNLQLEESILEKSVKNVQEKRE 83
Cdd:PRK09802 16 SERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALicDSTTPSVEPSVEDKSALNTAMKRS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 84 IAERAARQIVNGDVIFLDAGTTTGVLIDYLQQ-ENLTVVTNSIHHAVRLVERK-IKTIIIGGFVKQSTDASVGAVALEQI 161
Cdd:PRK09802 96 VAKAAVELIQPGHRVILDSGTTTFEIARLMRKhTDVIAMTNGMNVANALLEAEgVELLMTGGHLRRQSQSFYGDQAEQSL 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1353689567 162 RQLNFDKAFLGMNGIDKNY-FTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIEKSNII 228
Cdd:PRK09802 176 QNYHFDMLFLGVDAIDLERgVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMI 243
|
|
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
1-213 |
9.02e-21 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 87.75 E-value: 9.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 1 MNilKSERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEAPGNLQLEESILEKS-VKNVQ 79
Cdd:PRK13509 1 MT--EAQRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNIHqAQNHD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 80 EKREIAERAARQIVNGDVIFLDAGTTTGVLIDYLQQENLTVVTNSIHHAVRLVERK-IKTIIIGGFVKQSTdasvgAVAL 158
Cdd:PRK13509 79 EKVRIAKAASQLCNPGESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEhDSVIIMGGQYNKSQ-----SITL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1353689567 159 EQIRQLNFDKA----FLGMNGIDKNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQ 213
Cdd:PRK13509 154 SPQGSENSLYAghwmFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGE 212
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
4-235 |
1.74e-18 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 81.39 E-value: 1.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 4 LKSERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEA--PGNLQLEESILEKSVKNVQEK 81
Cdd:PRK10411 1 MKAARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRAKYihRQNQDSGDPFHIRLKSHYAHK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 82 REIAERAARQIVNGDVIFLDAGTTTGVLIDYLQQENLTVVTNSIHHAVRLVER-KIKTIIIGGFVKQSTDASVGAVALEQ 160
Cdd:PRK10411 81 ADIAREALAWIEEGMVIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKReRIQLISSGGTLERKYGCYVNPSLISQ 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1353689567 161 IRQLNFDKAFLGMNGIDK-NYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVKVAAIEK-SNIICQSSESS 235
Cdd:PRK10411 161 LKSLEIDLFIFSCEGIDSsGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEvTHIISDERQVA 237
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
8-59 |
4.41e-15 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 67.25 E-value: 4.41e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1353689567 8 RKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAE 59
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAV 52
|
|
| HTH_DeoR |
pfam08220 |
DeoR-like helix-turn-helix domain; |
8-61 |
1.68e-14 |
|
DeoR-like helix-turn-helix domain;
Pssm-ID: 285436 [Multi-domain] Cd Length: 57 Bit Score: 66.13 E-value: 1.68e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1353689567 8 RKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRRVHGGAEAP 61
Cdd:pfam08220 1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGGAVSN 54
|
|
| PRK10681 |
PRK10681 |
DNA-binding transcriptional repressor DeoR; Provisional |
14-222 |
1.96e-10 |
|
DNA-binding transcriptional repressor DeoR; Provisional
Pssm-ID: 182644 [Multi-domain] Cd Length: 252 Bit Score: 59.33 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 14 DRIHsqqfvrLEELIEVLDTSESTVRRDLDelenegklrrvhgGAEAP-----GNLQLEES------ILEKSVKNVQEKR 82
Cdd:PRK10681 20 DKLH------LKDAAALLGVSEMTIRRDLN-------------AHSAPvvllgGYIVLEPRsashylLSDQKSRLVEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 83 EIAERAARQIVNGDVIFLDAGTTTGVLIDYLQQE-NLTVVTNSIHHAVRLVERK-IKTIIIGGFVKQStDASVGAVAL-E 159
Cdd:PRK10681 81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNElPFTAVCYSLNTFLALQEKPhCRAILCGGEFHAS-NAIFKPLDFqQ 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1353689567 160 QIRQLNFDKAFLGMNGIDKNYFTTP-DIEEATIKRTIIDNAKESYVLADASKIGQfsfVKVAAI 222
Cdd:PRK10681 160 TLDNICPDIAFYSAAGVHVSKGATCfNLEELPVKHWAMAMAQKHVLVVDHSKFGK---VRPARM 220
|
|
| MngR |
COG2188 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
9-56 |
2.43e-05 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441791 [Multi-domain] Cd Length: 238 Bit Score: 44.08 E-value: 2.43e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1353689567 9 KQIILDRIHSQQFV---RL---EELIEVLDTSESTVRRDLDELENEGKLRRVHG 56
Cdd:COG2188 11 ADALRERIESGELPpgdRLpseRELAEEFGVSRMTVRKALDELVEEGLLERRQG 64
|
|
| YobV |
COG2378 |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ... |
5-49 |
9.45e-04 |
|
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];
Pssm-ID: 441945 [Multi-domain] Cd Length: 314 Bit Score: 39.68 E-value: 9.45e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1353689567 5 KSERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEG 49
Cdd:COG2378 3 RLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRELG 47
|
|
| Tau138_eWH |
cd16169 |
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits ... |
8-55 |
4.13e-03 |
|
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits of the tauB subcomplex of yeast transcription factor IIIC. This extended winged-helix domain of tau138 appears to interact with the TPR (tetratricopeptide repeat) array of tauA subunit tau131, and may therefore play a role in linking tauA, tauB, and TFIIIB to regulate the formation of the RNA polymerase III pre-initiation complex.
Pssm-ID: 320085 Cd Length: 97 Bit Score: 35.64 E-value: 4.13e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1353689567 8 RKQIILDRIHSQQFV------RLEELIEVLDTSES----TVRRDLDELENEGKLRRVH 55
Cdd:cd16169 7 RENEILEVLKELGGVvnlekkFLEEHEKLLGSLTRmdkkTLKRDLNKLEEEGKLKVIT 64
|
|
| COG2345 |
COG2345 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
4-58 |
5.69e-03 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 36.82 E-value: 5.69e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1353689567 4 LKSERKQIILDRIHSQQFVRLEELIEVLDTSESTVRRDLDELENEGKLRR--VHGGA 58
Cdd:COG2345 10 LADPTRRRILELLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVERetERRGR 66
|
|
| WHTH_GntR |
cd07377 |
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ... |
9-56 |
6.18e-03 |
|
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.
Pssm-ID: 153418 [Multi-domain] Cd Length: 66 Bit Score: 34.35 E-value: 6.18e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1353689567 9 KQIILDRIHSQQFV---RL---EELIEVLDTSESTVRRDLDELENEGKLRRVHG 56
Cdd:cd07377 7 ADQLREAILSGELKpgdRLpseRELAEELGVSRTTVREALRELEAEGLVERRPG 60
|
|
| CoA_trans |
smart00882 |
Coenzyme A transferase; Coenzyme A (CoA) transferases belong to an evolutionary conserved ... |
84-180 |
7.58e-03 |
|
Coenzyme A transferase; Coenzyme A (CoA) transferases belong to an evolutionary conserved family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.
Pssm-ID: 214882 [Multi-domain] Cd Length: 212 Bit Score: 36.41 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353689567 84 IAERAARQIVNGDVIFLDAGTTTGVLIDYLQQE------NLTVVTNS--IHHAVRLVERKIKTIIIGG------FVKQST 149
Cdd:smart00882 1 SAAEAAREIKDGDTVALGGFGGLPTPAALILALirqgpkDLTLISENggLGLGLLAGEGDVKKIIAGHvgltplLGRLYF 80
|
90 100 110
....*....|....*....|....*....|..
gi 1353689567 150 DasvGAVALEQIRQLNF-DKAFLGMNGIDKNY 180
Cdd:smart00882 81 D---GEIESFLLPQGGLaDRLRAGAAGVPGFG 109
|
|
| |
