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type III secretion system export apparatus subunit SctV [Burkholderia multivorans]
Protein Classification
flagellar biosynthesis protein FlhA ( domain architecture ID 10466159 )
flagellar biosynthesis protein FlhA is required for formation of the rod structure of the flagellar apparatus
List of domain hits
Name
Accession
Description
Interval
E-value
EscV super family
cl42319 Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
27-710
0e+00
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
COG4789 :Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 727.74
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 27 IG AS P R A DL F LAA FI VA VVALF ILPLP QAAL D GM I S LN LAA SV V LL T V ST Y V PS AVS FS S FP AL LL F TTLFRLAL N I ASC 106
Cdd:COG4789 3 NA AS G R S DL V LAA LL VA IIFMM ILPLP TYLV D IL I A LN ITI SV L LL M V AM Y I PS PLA FS T FP SV LL I TTLFRLAL S I STT 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 107 K LILL H A N AGH V I DA FG RL VVG N N V VVG G V V FL V I A VVQFIVI A KGSERVAEV G ARFSLDAMPGKQMSIDADLRAG I I S A 186
Cdd:COG4789 83 R LILL Q A D AGH I I ET FG NF VVG G N L VVG L V I FL I I T VVQFIVI T KGSERVAEV A ARFSLDAMPGKQMSIDADLRAG V I D A 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 187 DEAR E RR EK LE Q ESQ MH GAMDGAMKFVKGDAIAG LV I AFI NI VA GIA V G T L M HGM DIGT AL QR Y A ILT V GDG MAS QIP S L 266
Cdd:COG4789 163 DEAR R RR AL LE K ESQ LY GAMDGAMKFVKGDAIAG II I ILV NI IG GIA I G V L Q HGM SASE AL HT Y S ILT I GDG LVA QIP A L 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 267 L V SI A AGI VT TRV A tr DARQRQ LG EQLGE QL G A H P R ALLIAA LV L AG F LVV PGFP KWS F A L I A VA LG AFALTQ L K RK TT A 346
Cdd:COG4789 243 L I SI T AGI IV TRV S -- GDEDSN LG REIVS QL L A Q P K ALLIAA VL L LL F ALI PGFP TLV F L L L A AL LG GLGFKL L R RK RR A 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 347 P --- SFNLIHVAGRV GA ADDGQPAKVSHAAGV T SLIAVS L ADD L RS AL NLAQ L QAALSNAKA R VDA D I G TVF P R I TLNDD 423
Cdd:COG4789 321 A aaa ESEPLPALQAA GA KGSEAGLIDGDDFPP T VPLILR L SPS L AP AL EAEA L NQEIRRLRN R LFE D L G VPL P G I HIRFN 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 424 ERASAGT Y R I Y L QD V LA A H G A L K PG W LL -- W D GVAPLPERAERQPA E AFGPFATA LWV KPDG A P ---- PDG K WLTS E AA L 497
Cdd:COG4789 401 PGLPDDE Y S I L L NE V PV A R G T L P PG H LL vr D D VDELEALGIPAEEG E LPLGEGPS LWV PAEH A E llek AGI K VRDA E DV L 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 498 A A H VEQIV R E HA D E LL GIQET QA L VHLVRRDH PELV G E LT R LV PLQR VT EVL R RL LA E QVP IRNLR V I F E S LI T W A P N E P 577
Cdd:COG4789 481 A L H LSLVL R R HA A E FI GIQET RY L LDQMEKKY PELV K E VQ R VL PLQR IA EVL Q RL VE E GIS IRNLR L I L E A LI E W G P K E K 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 578 d DV IA L V E L VR VD L R R M I TD R HA G AARQ L RVV L FEQNLQ E R I EN A VMR T KQ G N FLAL SSAVK Q D I G EQ V R AIVQ saha SG 657
Cdd:COG4789 561 - DV VM L T E Y VR IA L K R Y I CH R YS G GQGT L PAL L LDPEIE E M I RG A IRQ T SA G S FLAL DPEQS Q A I L EQ L R QALG ---- PL 635
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1359392682 658 AH G AARLAVMVALGA RR Y V KTILQPML PDLPVLSYQE IEEDVQLHTV G WVKN P 710
Cdd:COG4789 636 PP G GQDPVLLTSMDI RR F V RKLIEREF PDLPVLSYQE LTPEIRVQPL G RIDL P 688
Name
Accession
Description
Interval
E-value
EscV
COG4789 Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
27-710
0e+00
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 727.74
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 27 IG AS P R A DL F LAA FI VA VVALF ILPLP QAAL D GM I S LN LAA SV V LL T V ST Y V PS AVS FS S FP AL LL F TTLFRLAL N I ASC 106
Cdd:COG4789 3 NA AS G R S DL V LAA LL VA IIFMM ILPLP TYLV D IL I A LN ITI SV L LL M V AM Y I PS PLA FS T FP SV LL I TTLFRLAL S I STT 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 107 K LILL H A N AGH V I DA FG RL VVG N N V VVG G V V FL V I A VVQFIVI A KGSERVAEV G ARFSLDAMPGKQMSIDADLRAG I I S A 186
Cdd:COG4789 83 R LILL Q A D AGH I I ET FG NF VVG G N L VVG L V I FL I I T VVQFIVI T KGSERVAEV A ARFSLDAMPGKQMSIDADLRAG V I D A 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 187 DEAR E RR EK LE Q ESQ MH GAMDGAMKFVKGDAIAG LV I AFI NI VA GIA V G T L M HGM DIGT AL QR Y A ILT V GDG MAS QIP S L 266
Cdd:COG4789 163 DEAR R RR AL LE K ESQ LY GAMDGAMKFVKGDAIAG II I ILV NI IG GIA I G V L Q HGM SASE AL HT Y S ILT I GDG LVA QIP A L 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 267 L V SI A AGI VT TRV A tr DARQRQ LG EQLGE QL G A H P R ALLIAA LV L AG F LVV PGFP KWS F A L I A VA LG AFALTQ L K RK TT A 346
Cdd:COG4789 243 L I SI T AGI IV TRV S -- GDEDSN LG REIVS QL L A Q P K ALLIAA VL L LL F ALI PGFP TLV F L L L A AL LG GLGFKL L R RK RR A 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 347 P --- SFNLIHVAGRV GA ADDGQPAKVSHAAGV T SLIAVS L ADD L RS AL NLAQ L QAALSNAKA R VDA D I G TVF P R I TLNDD 423
Cdd:COG4789 321 A aaa ESEPLPALQAA GA KGSEAGLIDGDDFPP T VPLILR L SPS L AP AL EAEA L NQEIRRLRN R LFE D L G VPL P G I HIRFN 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 424 ERASAGT Y R I Y L QD V LA A H G A L K PG W LL -- W D GVAPLPERAERQPA E AFGPFATA LWV KPDG A P ---- PDG K WLTS E AA L 497
Cdd:COG4789 401 PGLPDDE Y S I L L NE V PV A R G T L P PG H LL vr D D VDELEALGIPAEEG E LPLGEGPS LWV PAEH A E llek AGI K VRDA E DV L 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 498 A A H VEQIV R E HA D E LL GIQET QA L VHLVRRDH PELV G E LT R LV PLQR VT EVL R RL LA E QVP IRNLR V I F E S LI T W A P N E P 577
Cdd:COG4789 481 A L H LSLVL R R HA A E FI GIQET RY L LDQMEKKY PELV K E VQ R VL PLQR IA EVL Q RL VE E GIS IRNLR L I L E A LI E W G P K E K 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 578 d DV IA L V E L VR VD L R R M I TD R HA G AARQ L RVV L FEQNLQ E R I EN A VMR T KQ G N FLAL SSAVK Q D I G EQ V R AIVQ saha SG 657
Cdd:COG4789 561 - DV VM L T E Y VR IA L K R Y I CH R YS G GQGT L PAL L LDPEIE E M I RG A IRQ T SA G S FLAL DPEQS Q A I L EQ L R QALG ---- PL 635
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1359392682 658 AH G AARLAVMVALGA RR Y V KTILQPML PDLPVLSYQE IEEDVQLHTV G WVKN P 710
Cdd:COG4789 636 PP G GQDPVLLTSMDI RR F V RKLIEREF PDLPVLSYQE LTPEIRVQPL G RIDL P 688
hrcV
TIGR01399 type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
32-707
0e+00
type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273600 [Multi-domain]
Cd Length: 677
Bit Score: 613.20
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 32 R A DL F LA AFIV A VVALF ILPLP QAAL D GM I SL N LAA SV V LL TVST Y V P SAVSF S S FP AL LL F TTLFRLAL N I ASCK LILL 111
Cdd:TIGR01399 2 R S DL V LA LLLL A IISMM ILPLP TLLV D IL I AI N ITI SV L LL MIAI Y I P RPLAL S T FP SV LL I TTLFRLAL S I STTR LILL 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 112 HA N AG HV I D AFG RL VVG N N VV VG G V V FL V I AV VQFIVI A KGSERVAEV G ARFSLDAMPGKQMSIDADLRAG I I S ADEAR E 191
Cdd:TIGR01399 82 HA D AG NI I E AFG QF VVG G N LA VG L V I FL I I TI VQFIVI T KGSERVAEV S ARFSLDAMPGKQMSIDADLRAG V I D ADEAR R 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 192 RR EK LE Q ESQ MH GAMDGAMKFVKGDAIAG LV I AF INI VA GI AV G TLM HGM DIGT AL QR Y AI LT V GDG MA SQIP S LL V S IA 271
Cdd:TIGR01399 162 RR ST LE K ESQ LY GAMDGAMKFVKGDAIAG II I VL INI IG GI SI G VTQ HGM SASE AL HL Y TV LT I GDG LV SQIP A LL I S VT 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 272 AGI VT TRV ATRD ar Q R Q LG EQL G E QL GAH PRALL I AA LV L A GF LVV PGFP KWS FAL I AV A L G A FALTQLK RK TTAPSF N L 351
Cdd:TIGR01399 242 AGI IV TRV PGEA -- E R N LG REI G H QL TSQ PRALL L AA VL L L GF ALI PGFP LLV FAL L AV L L A A AGYLLSR RK RSRAKA N K 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 352 IHVA G R V GA A -- DDGQPAKVSHA A GVTS LI a VS L AD DL R S ALNLAQ L QAALSNAKARVDA D I G TVF P R I TLNDDERASAG 429
Cdd:TIGR01399 320 AQAS G A V AS A pg AAAPIKNLDPF A EACP LI - LR L SP DL Q S SADKDT L DQEIERMRWALFE D L G IPL P G I IIRVGDSLPDN 398
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 430 TY RI Y L QD V LAAHGALK PG WLL wdgvap L PERAE r QPAE A FG P FATALWVKPDGAPP dgk W L T S E A A ------------- 496
Cdd:TIGR01399 399 EF RI L L YE V PVLRDTIP PG HVA ------ L NDGVD - NIEV A GI P AISGKRWPGESQRV --- W V T E E G A eklqgaglgyfsd 468
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 497 --- LAAHVEQIVREH A D E LL GIQET QA L VHLVR R DH PELV G E LT R LV PLQR VT EVL R RL LA EQV P IRNLR V I F E S LI T WA 573
Cdd:TIGR01399 469 sqv ITHRLKATLLRN A Q E FI GIQET RY L LDQME R EY PELV K E VQ R VL PLQR IA EVL Q RL VS EQV S IRNLR L I L E T LI E WA 548
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 574 PN E p D DV IA L V E L VR VD L R R M I TD R H A GAA RQL RV VL FEQNLQ E R I EN A VMR T KQ G NF LAL SSAVKQDIGE Q V R AI V qsa 653
Cdd:TIGR01399 549 QR E - K DV VM L T E Y VR IA L K R Y I CH R Y A NGG RQL SA VL IDPEIE E L I RG A IRQ T ST G TY LAL DPDDSEQLLD Q I R QA V --- 624
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1359392682 654 h ASGAHGAARLAVMVALGA RRYV KTILQPML PDLPVLSYQE IE E DVQLHTV G WV 707
Cdd:TIGR01399 625 - GDLPRAPSQPVLLTSMDI RRYV RKMIESEF PDLPVLSYQE LG E EIEVQVL G RI 677
FHIPEP
pfam00771 FHIPEP family;
44-698
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 610.55
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 44 VV A LF ILPLP QAA LD GMISL N L A A S VVL L T V ST Y VPSAVS FS S FP A LLL F TTLFRLALN I AS CK LILLH AN -- AG H VI D A 121
Cdd:pfam00771 1 IL A MM ILPLP PFL LD LLLAF N I A L S LLI L L V AL Y IKRPLD FS V FP T LLL I TTLFRLALN V AS TR LILLH GH ea AG K VI E A 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 122 FG RL VVG N N V VVG G VVFL VIAV VQFIVI A KG S ERVAEV G ARF S LDAMPGKQM S IDADL R AG I I SAD EAR E RRE K L EQ E SQ 201
Cdd:pfam00771 81 FG QF VVG G N Y VVG L VVFL ILVI VQFIVI T KG A ERVAEV A ARF T LDAMPGKQM A IDADL N AG L I DEE EAR R RRE E L QR E AD 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 202 MH GAMDGA M KFVKGDAIAG LV I AF INI VA G IAV G T L M HGM DI G T A L Q R Y AI LT V GDG MA SQIP S LL V S I AAGI VT TRVA T 281
Cdd:pfam00771 161 FY GAMDGA S KFVKGDAIAG II I TL INI IG G LII G V L Q HGM SF G E A A Q T Y TL LT I GDG LV SQIP A LL I S T AAGI IV TRVA S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 282 RDA rqrq LGE QLGE QL G A H P R AL L IAA L VL AGFLVV PG F P KWS F A L I A VA LG AF A LTQLK RK TT A psfnlihvagrv G A A 361
Cdd:pfam00771 241 EGN ---- LGE EIVG QL F A N P K AL Y IAA G VL LLLGLI PG L P TLP F L L L A AL LG FL A YRLRR RK KK A ------------ A A E 304
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 362 DDGQPAKVSH A AGVTSLIAVS L ADD L RSALNLA Q --- L QAALSNAKARVDADI G T V F P R I TLN D DERASAGT YRI YLQD V 438
Cdd:pfam00771 305 EAEAEEAAAA A VLPVDPLELE L GYG L IPLVDES Q ggd L LDRIKGIRRQLALEL G F V V P P I RIR D NLQLKPNE YRI KIKG V 384
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 439 LA A H G A L K P GW LL W ---- DGVAPL P ERAERQ P ae AFG pf AT A L W VKPD -------- G APP dgkw LTSEAAL A A H VEQIVR 506
Cdd:pfam00771 385 EV A R G E L L P DH LL A mnpg GVLGEI P GIPTKE P -- AFG -- LP A V W IDEE qreeaela G YTV ---- VDPPTVI A T H LTEVIK 456
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 507 E HA D ELLG I QE T QAL VHLVRRDH P E LV G EL T - R L VP L QRVTE VL RR LL A E Q V P IR N LR V I F E S L ITW AP NEP d D VIA L V E 585
Cdd:pfam00771 457 R HA A ELLG R QE V QAL LDNLKKEY P K LV E EL V p K L LS L GEIQK VL QN LL R E R V S IR D LR T I L E T L ADY AP KTK - D PDL L T E 535
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 586 L VR VD L R R M I TDRH AG AARQ L R V VLFEQN L QERIENAVMRTK - QG NF LAL SSAVK Q DIG E QVRAI V QSAHAS G AH gaar L 664
Cdd:pfam00771 536 Y VR QA L G R Q I CQQY AG EDGT L P V ITLDPE L EQLLRESLQQSE g QG SY LAL DPDLA Q RLL E ALSEA V EKLEQQ G EP ---- P 611
650 660 670
....*....|....*....|....*....|....
gi 1359392682 665 AVMVALGA RRY VKTI L QPM LPDLPVLSY Q EI EE D 698
Cdd:pfam00771 612 VLLTSPDI RRY LRRL L ERF LPDLPVLSY N EI PP D 645
flhA
PRK06012 flagellar type III secretion system protein FlhA;
25-705
2.54e-175
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 518.14
E-value: 2.54e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 25 RRIGASPRA DL FL A AFIV A VV A LF ILPLP QAA LD GMISL N L A A SV VL L T V STYVPSAVS FS S FP A LLL F TTL F RLALN I A 104
Cdd:PRK06012 11 GNLKLLKWR DL AV A ILVL A IL A MM ILPLP PFL LD LLLTF N I A L SV LI L L V ALFIQRPLD FS A FP T LLL I TTL L RLALN V A 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 105 S CK LILL H ----- AN AG H VI D AFG RL VVG N N V VVG G VVF LVIAVVQ F I VI A KG SE R V AEV G ARF S LDAMPGKQM S IDADL 179
Cdd:PRK06012 91 S TR LILL E ghegt DA AG K VI E AFG HF VVG G N F VVG I VVF IILVIIN F V VI T KG AG R I AEV A ARF T LDAMPGKQM A IDADL 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 180 R AG I I SAD EA RE RR EK L E QE SQMH GAMDGA M KFVKGDAIAG LV I AF INI VA G IAV G TLM HGM DI G T A LQR Y AI LT V GDG M 259
Cdd:PRK06012 171 N AG L I DEE EA KK RR KE L Q QE ADFY GAMDGA S KFVKGDAIAG IL I TV INI IG G LII G VVQ HGM SF G E A AET Y TL LT I GDG L 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 260 A SQIP S LL V S I AAGI VT TRV ATRDA rqrq L GEQ LGE QL G A H P R AL L IAA L VL AGFLV VPG F P KWS F A L I A VA LG AF A LTQ 339
Cdd:PRK06012 251 V SQIP A LL I S T AAGI IV TRV SSDGD ---- V GEQ IVG QL F A N P K AL Y IAA G VL FLLGL VPG M P HLP F L L L A GL LG FL A YRL 326
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 340 L KR KTT A PS fnlihvag RVGAADDGQP A KVSHAAGVTSLIA V sla D D L RSAL -- N L AQ L -- QAALSNAKA R VDA ------ 409
Cdd:PRK06012 327 R KR EKK A AE -------- LAAEEAEEEE A AEPEEESWDDVLP V --- D P L ELEV gy G L IP L vd ENQGGELLD R IRS irkkia 395
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 410 - DI G TVF P RITLN D DERASAGT YRI YLQD V LAAH G A L K PG W LL W ---- DGVAP LP ERAERQ PA ea FG pf AT A L W VKPD ga 484
Cdd:PRK06012 396 q EL G FLV P PVRIR D NLQLPPNE YRI KIKG V EVGS G E L R PG R LL A mnpg GVDGE LP GIPTKE PA -- FG -- LP A V W IDEA -- 469
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 485 ppdgkw L TSE A A ------------ L A A H VEQIVRE HA D ELLG I QE T Q A L VHLVRRDH P E LV G EL T - RLVP L QRVTE VL RR 551
Cdd:PRK06012 470 ------ L REQ A Q llgytvvdpstv V A T H LTEVIKN HA A ELLG R QE V Q Q L LDRLAKEY P K LV E EL V p KVLS L GTLQK VL QN 543
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 552 LL A E Q V P IR N LR V I F E S L ITW AP N e PD D VIA L V E L VR VD L R R M I TDRHA G AARQ L R V VLFEQN L QERIENAVMR T KQ G NF 631
Cdd:PRK06012 544 LL K E R V S IR D LR T I L E T L ADY AP I - TK D PDE L T E H VR QR L G R Q I VQQYK G EDGE L P V ITLDPE L EQLLLQSLQG T GG G SY 622
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1359392682 632 LAL SSAVKQDIGEQVRAIVQSAHAS G AHG aarl AVM V ALGA R R Y VKTI L QPM LP D LPVLSY Q EI EEDVQLHT VG 705
Cdd:PRK06012 623 LAL EPGLAERLLQSLQEALERQEMK G EPP ---- VLL V SPAL R P Y LRRL L ERF LP Q LPVLSY N EI PDNIEIRI VG 692
Name
Accession
Description
Interval
E-value
EscV
COG4789 Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
27-710
0e+00
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 727.74
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 27 IG AS P R A DL F LAA FI VA VVALF ILPLP QAAL D GM I S LN LAA SV V LL T V ST Y V PS AVS FS S FP AL LL F TTLFRLAL N I ASC 106
Cdd:COG4789 3 NA AS G R S DL V LAA LL VA IIFMM ILPLP TYLV D IL I A LN ITI SV L LL M V AM Y I PS PLA FS T FP SV LL I TTLFRLAL S I STT 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 107 K LILL H A N AGH V I DA FG RL VVG N N V VVG G V V FL V I A VVQFIVI A KGSERVAEV G ARFSLDAMPGKQMSIDADLRAG I I S A 186
Cdd:COG4789 83 R LILL Q A D AGH I I ET FG NF VVG G N L VVG L V I FL I I T VVQFIVI T KGSERVAEV A ARFSLDAMPGKQMSIDADLRAG V I D A 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 187 DEAR E RR EK LE Q ESQ MH GAMDGAMKFVKGDAIAG LV I AFI NI VA GIA V G T L M HGM DIGT AL QR Y A ILT V GDG MAS QIP S L 266
Cdd:COG4789 163 DEAR R RR AL LE K ESQ LY GAMDGAMKFVKGDAIAG II I ILV NI IG GIA I G V L Q HGM SASE AL HT Y S ILT I GDG LVA QIP A L 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 267 L V SI A AGI VT TRV A tr DARQRQ LG EQLGE QL G A H P R ALLIAA LV L AG F LVV PGFP KWS F A L I A VA LG AFALTQ L K RK TT A 346
Cdd:COG4789 243 L I SI T AGI IV TRV S -- GDEDSN LG REIVS QL L A Q P K ALLIAA VL L LL F ALI PGFP TLV F L L L A AL LG GLGFKL L R RK RR A 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 347 P --- SFNLIHVAGRV GA ADDGQPAKVSHAAGV T SLIAVS L ADD L RS AL NLAQ L QAALSNAKA R VDA D I G TVF P R I TLNDD 423
Cdd:COG4789 321 A aaa ESEPLPALQAA GA KGSEAGLIDGDDFPP T VPLILR L SPS L AP AL EAEA L NQEIRRLRN R LFE D L G VPL P G I HIRFN 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 424 ERASAGT Y R I Y L QD V LA A H G A L K PG W LL -- W D GVAPLPERAERQPA E AFGPFATA LWV KPDG A P ---- PDG K WLTS E AA L 497
Cdd:COG4789 401 PGLPDDE Y S I L L NE V PV A R G T L P PG H LL vr D D VDELEALGIPAEEG E LPLGEGPS LWV PAEH A E llek AGI K VRDA E DV L 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 498 A A H VEQIV R E HA D E LL GIQET QA L VHLVRRDH PELV G E LT R LV PLQR VT EVL R RL LA E QVP IRNLR V I F E S LI T W A P N E P 577
Cdd:COG4789 481 A L H LSLVL R R HA A E FI GIQET RY L LDQMEKKY PELV K E VQ R VL PLQR IA EVL Q RL VE E GIS IRNLR L I L E A LI E W G P K E K 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 578 d DV IA L V E L VR VD L R R M I TD R HA G AARQ L RVV L FEQNLQ E R I EN A VMR T KQ G N FLAL SSAVK Q D I G EQ V R AIVQ saha SG 657
Cdd:COG4789 561 - DV VM L T E Y VR IA L K R Y I CH R YS G GQGT L PAL L LDPEIE E M I RG A IRQ T SA G S FLAL DPEQS Q A I L EQ L R QALG ---- PL 635
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1359392682 658 AH G AARLAVMVALGA RR Y V KTILQPML PDLPVLSYQE IEEDVQLHTV G WVKN P 710
Cdd:COG4789 636 PP G GQDPVLLTSMDI RR F V RKLIEREF PDLPVLSYQE LTPEIRVQPL G RIDL P 688
hrcV
TIGR01399 type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
32-707
0e+00
type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273600 [Multi-domain]
Cd Length: 677
Bit Score: 613.20
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 32 R A DL F LA AFIV A VVALF ILPLP QAAL D GM I SL N LAA SV V LL TVST Y V P SAVSF S S FP AL LL F TTLFRLAL N I ASCK LILL 111
Cdd:TIGR01399 2 R S DL V LA LLLL A IISMM ILPLP TLLV D IL I AI N ITI SV L LL MIAI Y I P RPLAL S T FP SV LL I TTLFRLAL S I STTR LILL 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 112 HA N AG HV I D AFG RL VVG N N VV VG G V V FL V I AV VQFIVI A KGSERVAEV G ARFSLDAMPGKQMSIDADLRAG I I S ADEAR E 191
Cdd:TIGR01399 82 HA D AG NI I E AFG QF VVG G N LA VG L V I FL I I TI VQFIVI T KGSERVAEV S ARFSLDAMPGKQMSIDADLRAG V I D ADEAR R 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 192 RR EK LE Q ESQ MH GAMDGAMKFVKGDAIAG LV I AF INI VA GI AV G TLM HGM DIGT AL QR Y AI LT V GDG MA SQIP S LL V S IA 271
Cdd:TIGR01399 162 RR ST LE K ESQ LY GAMDGAMKFVKGDAIAG II I VL INI IG GI SI G VTQ HGM SASE AL HL Y TV LT I GDG LV SQIP A LL I S VT 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 272 AGI VT TRV ATRD ar Q R Q LG EQL G E QL GAH PRALL I AA LV L A GF LVV PGFP KWS FAL I AV A L G A FALTQLK RK TTAPSF N L 351
Cdd:TIGR01399 242 AGI IV TRV PGEA -- E R N LG REI G H QL TSQ PRALL L AA VL L L GF ALI PGFP LLV FAL L AV L L A A AGYLLSR RK RSRAKA N K 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 352 IHVA G R V GA A -- DDGQPAKVSHA A GVTS LI a VS L AD DL R S ALNLAQ L QAALSNAKARVDA D I G TVF P R I TLNDDERASAG 429
Cdd:TIGR01399 320 AQAS G A V AS A pg AAAPIKNLDPF A EACP LI - LR L SP DL Q S SADKDT L DQEIERMRWALFE D L G IPL P G I IIRVGDSLPDN 398
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 430 TY RI Y L QD V LAAHGALK PG WLL wdgvap L PERAE r QPAE A FG P FATALWVKPDGAPP dgk W L T S E A A ------------- 496
Cdd:TIGR01399 399 EF RI L L YE V PVLRDTIP PG HVA ------ L NDGVD - NIEV A GI P AISGKRWPGESQRV --- W V T E E G A eklqgaglgyfsd 468
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 497 --- LAAHVEQIVREH A D E LL GIQET QA L VHLVR R DH PELV G E LT R LV PLQR VT EVL R RL LA EQV P IRNLR V I F E S LI T WA 573
Cdd:TIGR01399 469 sqv ITHRLKATLLRN A Q E FI GIQET RY L LDQME R EY PELV K E VQ R VL PLQR IA EVL Q RL VS EQV S IRNLR L I L E T LI E WA 548
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 574 PN E p D DV IA L V E L VR VD L R R M I TD R H A GAA RQL RV VL FEQNLQ E R I EN A VMR T KQ G NF LAL SSAVKQDIGE Q V R AI V qsa 653
Cdd:TIGR01399 549 QR E - K DV VM L T E Y VR IA L K R Y I CH R Y A NGG RQL SA VL IDPEIE E L I RG A IRQ T ST G TY LAL DPDDSEQLLD Q I R QA V --- 624
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1359392682 654 h ASGAHGAARLAVMVALGA RRYV KTILQPML PDLPVLSYQE IE E DVQLHTV G WV 707
Cdd:TIGR01399 625 - GDLPRAPSQPVLLTSMDI RRYV RKMIESEF PDLPVLSYQE LG E EIEVQVL G RI 677
FHIPEP
pfam00771 FHIPEP family;
44-698
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 610.55
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 44 VV A LF ILPLP QAA LD GMISL N L A A S VVL L T V ST Y VPSAVS FS S FP A LLL F TTLFRLALN I AS CK LILLH AN -- AG H VI D A 121
Cdd:pfam00771 1 IL A MM ILPLP PFL LD LLLAF N I A L S LLI L L V AL Y IKRPLD FS V FP T LLL I TTLFRLALN V AS TR LILLH GH ea AG K VI E A 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 122 FG RL VVG N N V VVG G VVFL VIAV VQFIVI A KG S ERVAEV G ARF S LDAMPGKQM S IDADL R AG I I SAD EAR E RRE K L EQ E SQ 201
Cdd:pfam00771 81 FG QF VVG G N Y VVG L VVFL ILVI VQFIVI T KG A ERVAEV A ARF T LDAMPGKQM A IDADL N AG L I DEE EAR R RRE E L QR E AD 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 202 MH GAMDGA M KFVKGDAIAG LV I AF INI VA G IAV G T L M HGM DI G T A L Q R Y AI LT V GDG MA SQIP S LL V S I AAGI VT TRVA T 281
Cdd:pfam00771 161 FY GAMDGA S KFVKGDAIAG II I TL INI IG G LII G V L Q HGM SF G E A A Q T Y TL LT I GDG LV SQIP A LL I S T AAGI IV TRVA S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 282 RDA rqrq LGE QLGE QL G A H P R AL L IAA L VL AGFLVV PG F P KWS F A L I A VA LG AF A LTQLK RK TT A psfnlihvagrv G A A 361
Cdd:pfam00771 241 EGN ---- LGE EIVG QL F A N P K AL Y IAA G VL LLLGLI PG L P TLP F L L L A AL LG FL A YRLRR RK KK A ------------ A A E 304
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 362 DDGQPAKVSH A AGVTSLIAVS L ADD L RSALNLA Q --- L QAALSNAKARVDADI G T V F P R I TLN D DERASAGT YRI YLQD V 438
Cdd:pfam00771 305 EAEAEEAAAA A VLPVDPLELE L GYG L IPLVDES Q ggd L LDRIKGIRRQLALEL G F V V P P I RIR D NLQLKPNE YRI KIKG V 384
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 439 LA A H G A L K P GW LL W ---- DGVAPL P ERAERQ P ae AFG pf AT A L W VKPD -------- G APP dgkw LTSEAAL A A H VEQIVR 506
Cdd:pfam00771 385 EV A R G E L L P DH LL A mnpg GVLGEI P GIPTKE P -- AFG -- LP A V W IDEE qreeaela G YTV ---- VDPPTVI A T H LTEVIK 456
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 507 E HA D ELLG I QE T QAL VHLVRRDH P E LV G EL T - R L VP L QRVTE VL RR LL A E Q V P IR N LR V I F E S L ITW AP NEP d D VIA L V E 585
Cdd:pfam00771 457 R HA A ELLG R QE V QAL LDNLKKEY P K LV E EL V p K L LS L GEIQK VL QN LL R E R V S IR D LR T I L E T L ADY AP KTK - D PDL L T E 535
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 586 L VR VD L R R M I TDRH AG AARQ L R V VLFEQN L QERIENAVMRTK - QG NF LAL SSAVK Q DIG E QVRAI V QSAHAS G AH gaar L 664
Cdd:pfam00771 536 Y VR QA L G R Q I CQQY AG EDGT L P V ITLDPE L EQLLRESLQQSE g QG SY LAL DPDLA Q RLL E ALSEA V EKLEQQ G EP ---- P 611
650 660 670
....*....|....*....|....*....|....
gi 1359392682 665 AVMVALGA RRY VKTI L QPM LPDLPVLSY Q EI EE D 698
Cdd:pfam00771 612 VLLTSPDI RRY LRRL L ERF LPDLPVLSY N EI PP D 645
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
35-705
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 548.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 35 L FLAAFIV A VV A LF ILPLP QAA LD GMISL N L A A S VVL L T V ST Y VPSAVS FS S FP A LLL F TTLFRL A LN I AS CK LILL H -- 112
Cdd:COG1298 1 L AVPLGVI A IL A MM ILPLP PFL LD LLLAF N I A L S LLI L L V AL Y IKRPLD FS V FP T LLL I TTLFRL S LN V AS TR LILL E gh 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 113 --- AN AG H VI D AFG RL VVG N N V VVG G VVFL VIAVVQ F I VI A KG SE R V AEV G ARF S LDAMPGKQM S IDADL R AG I I SAD EA 189
Cdd:COG1298 81 egt DA AG K VI E AFG EF VVG G N Y VVG L VVFL ILVIIN F V VI T KG AG R I AEV A ARF T LDAMPGKQM A IDADL N AG L I DEE EA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 190 R E RRE KLEQ E SQMH GAMDGA M KFV K GDAIAG LV I AF INI VA G IAV G T L M HGM DI G T A L Q R Y AI LT V GDG MA SQIP S LL V S 269
Cdd:COG1298 161 R R RRE EIQR E ADFY GAMDGA S KFV R GDAIAG IL I TL INI IG G LII G V L Q HGM SF G E A A Q T Y TL LT I GDG LV SQIP A LL I S 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 270 I AAGI VT TR VATRDA rqrq LGEQL GE QL G A H P R AL L IAA L VL AGFLVV PG F P KWS F A L I A VA LG AF A LTQL KR KTTAP sf 349
Cdd:COG1298 241 T AAGI IV TR AGSEGD ---- LGEQL SG QL F A N P K AL Y IAA G VL GLLGLI PG M P HLP F L L L A AL LG GL A YRLK KR QKEEE -- 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 350 nlihv A GRVG AA DDGQP A KVSHAAG V TS L IA V ------------ S L A D DLRSALN L AQL ----- Q A A L snakarvda DI G 412
Cdd:COG1298 315 ----- A EEAA AA AEAEA A AEPAEES V DD L LP V dplelelgygli P L V D ESQGGDL L DRI kgirr Q L A Q --------- EL G 380
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 413 T V F P RITLN D DERASAGT YRI YLQD V LA A H G A L K P GW LL W ---- DGVAP LP ERAERQ P ae AFG pf AT A L W VK P D gappdg 488
Cdd:COG1298 381 F V V P PVRIR D NLQLKPNE YRI KIKG V EV A R G E L R P DR LL A inpg GVTGE LP GIPTKE P -- AFG -- LP A V W ID P E ------ 450
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 489 kw LTS EA A ------------ L A A H VEQIVRE HA D ELLG I QE T Q A L VHLVRRDH P E LV G EL T - R L VP L QRVTE VL RR LL A E 555
Cdd:COG1298 451 -- QRE EA E llgytvvdpstv I A T H LSEVIKR HA A ELLG R QE V Q Q L LDRLKKEY P K LV E EL V p K L LS L GELQK VL QN LL R E 528
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 556 Q V P IR N LR V I F E S L ITW AP NEP d D VIA L V E L VR VD L R R M I TDRH AG AARQ L R V VLFEQN L QERIENAVMR T K QG NF LAL S 635
Cdd:COG1298 529 R V S IR D LR T I L E T L ADY AP RTK - D PDL L T E H VR QA L G R Q I VQQY AG PDGE L P V ITLDPE L EQLLLESLQQ T E QG SY LAL D 607
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 636 SAVK Q DIGEQVRAI V QSAH A S G AHG aarl AVM V ALGA R R Y VKTI L QPM LPDLPVLSY Q EI EE DV QLHT VG 705
Cdd:COG1298 608 PGLA Q RLLQSLAEA V EKLE A Q G EPP ---- VLL V SPQL R P Y LRRL L ERF LPDLPVLSY N EI PP DV EIES VG 673
flhA
PRK06012 flagellar type III secretion system protein FlhA;
25-705
2.54e-175
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 518.14
E-value: 2.54e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 25 RRIGASPRA DL FL A AFIV A VV A LF ILPLP QAA LD GMISL N L A A SV VL L T V STYVPSAVS FS S FP A LLL F TTL F RLALN I A 104
Cdd:PRK06012 11 GNLKLLKWR DL AV A ILVL A IL A MM ILPLP PFL LD LLLTF N I A L SV LI L L V ALFIQRPLD FS A FP T LLL I TTL L RLALN V A 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 105 S CK LILL H ----- AN AG H VI D AFG RL VVG N N V VVG G VVF LVIAVVQ F I VI A KG SE R V AEV G ARF S LDAMPGKQM S IDADL 179
Cdd:PRK06012 91 S TR LILL E ghegt DA AG K VI E AFG HF VVG G N F VVG I VVF IILVIIN F V VI T KG AG R I AEV A ARF T LDAMPGKQM A IDADL 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 180 R AG I I SAD EA RE RR EK L E QE SQMH GAMDGA M KFVKGDAIAG LV I AF INI VA G IAV G TLM HGM DI G T A LQR Y AI LT V GDG M 259
Cdd:PRK06012 171 N AG L I DEE EA KK RR KE L Q QE ADFY GAMDGA S KFVKGDAIAG IL I TV INI IG G LII G VVQ HGM SF G E A AET Y TL LT I GDG L 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 260 A SQIP S LL V S I AAGI VT TRV ATRDA rqrq L GEQ LGE QL G A H P R AL L IAA L VL AGFLV VPG F P KWS F A L I A VA LG AF A LTQ 339
Cdd:PRK06012 251 V SQIP A LL I S T AAGI IV TRV SSDGD ---- V GEQ IVG QL F A N P K AL Y IAA G VL FLLGL VPG M P HLP F L L L A GL LG FL A YRL 326
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 340 L KR KTT A PS fnlihvag RVGAADDGQP A KVSHAAGVTSLIA V sla D D L RSAL -- N L AQ L -- QAALSNAKA R VDA ------ 409
Cdd:PRK06012 327 R KR EKK A AE -------- LAAEEAEEEE A AEPEEESWDDVLP V --- D P L ELEV gy G L IP L vd ENQGGELLD R IRS irkkia 395
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 410 - DI G TVF P RITLN D DERASAGT YRI YLQD V LAAH G A L K PG W LL W ---- DGVAP LP ERAERQ PA ea FG pf AT A L W VKPD ga 484
Cdd:PRK06012 396 q EL G FLV P PVRIR D NLQLPPNE YRI KIKG V EVGS G E L R PG R LL A mnpg GVDGE LP GIPTKE PA -- FG -- LP A V W IDEA -- 469
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 485 ppdgkw L TSE A A ------------ L A A H VEQIVRE HA D ELLG I QE T Q A L VHLVRRDH P E LV G EL T - RLVP L QRVTE VL RR 551
Cdd:PRK06012 470 ------ L REQ A Q llgytvvdpstv V A T H LTEVIKN HA A ELLG R QE V Q Q L LDRLAKEY P K LV E EL V p KVLS L GTLQK VL QN 543
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 552 LL A E Q V P IR N LR V I F E S L ITW AP N e PD D VIA L V E L VR VD L R R M I TDRHA G AARQ L R V VLFEQN L QERIENAVMR T KQ G NF 631
Cdd:PRK06012 544 LL K E R V S IR D LR T I L E T L ADY AP I - TK D PDE L T E H VR QR L G R Q I VQQYK G EDGE L P V ITLDPE L EQLLLQSLQG T GG G SY 622
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1359392682 632 LAL SSAVKQDIGEQVRAIVQSAHAS G AHG aarl AVM V ALGA R R Y VKTI L QPM LP D LPVLSY Q EI EEDVQLHT VG 705
Cdd:PRK06012 623 LAL EPGLAERLLQSLQEALERQEMK G EPP ---- VLL V SPAL R P Y LRRL L ERF LP Q LPVLSY N EI PDNIEIRI VG 692
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
34-707
5.67e-161
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 480.61
E-value: 5.67e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 34 DL F LA AFI VA VV A LF ILPLP QAA LD GMIS LN L A A S VVL L T V STYVPSAVS FSSFP A LLL FT TLFRL A LN I AS CK LIL L H A 113
Cdd:TIGR01398 3 DL L LA IGV VA IL A VM ILPLP AFL LD ILLA LN I A L S LLI L L V TLFIQKPLD FSSFP T LLL IA TLFRL S LN V AS TR LIL T H G 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 114 N ----- AG H VI D AFG RL VVG N N V V V G GV VF LVIAV V Q FIVI A KG SE R V AEV G ARF S LDAMPGKQM S IDADL R AG I I SAD E 188
Cdd:TIGR01398 83 H egpna AG K VI E AFG QF VVG G N Y V I G LI VF IILII V N FIVI T KG AT R I AEV A ARF T LDAMPGKQM A IDADL N AG L I TEE E 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 189 A RE RRE K LEQE SQMH GAMDGA M KFVKGDAIAG LV I AF INI VA G IAV G TLM HGM DIGT A LQR Y A ILT V GDG MAS QIP S L LV 268
Cdd:TIGR01398 163 A KK RRE E LEQE ADFY GAMDGA S KFVKGDAIAG II I TL INI IG G LII G VVQ HGM SLSD A AST Y T ILT I GDG LVA QIP A L II 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 269 S I A A G IVT TR VATRDA rqrq L G EQLGE QLGA H PRALLI A A L VL AGFLV VPG F P KWS F ALI A V AL GAF A LTQLK R KTTAP s 348
Cdd:TIGR01398 243 S T A T G LIV TR ASSEGS ---- F G KAIVT QLGA N PRALLI V A A VL GLLAL VPG L P TFP F LFL A G AL AFL A WYLRR R SKQEE - 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 349 fnli HV A GRVGA A DDGQPAKVSHAAGVTSLIA ---------- VS L A DD LRS alnl AQ L QAALSNAKARVDADI G T V F P R I 418
Cdd:TIGR01398 318 ---- EA A AEAAK A QEEAAEEEEESINDILALD dlelelgygl IP L V DD SQG ---- GD L LDRIRSIRKQLAQEY G F V M P V I 389
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 419 TLN D DE R ASAGT YRI YLQD V LA A H G A L K PG WL L W ---- DGVAPL P ERAE R Q P ae AFG pf AT A L W VKP dgappdgk WLTS E 494
Cdd:TIGR01398 390 RIR D NL R LPPNE YRI KIKG V EV A R G E L R PG KY L A mnpg NADGEI P GEET R E P -- AFG -- LP A Y W ISE -------- KNKE E 457
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 495 A A ------------ LA A H VEQIVREH A D ELL GI QE T Q A L VHLVRRDH P E LV G EL T - RL VPL QRVTE VL RR LL A E Q V P IRN 561
Cdd:TIGR01398 458 A E rlgytvvdpatv LA T H LSEVIKNN A A ELL TR QE V Q N L LDRLKEEY P K LV E EL I p DK VPL GTIQK VL QL LL R E R V S IRN 537
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 562 L RV I F E S L ITW AP NE p D D VIA LVE L VR VD L R R M IT DRHAGAARQ L R V VLFEQN L QERIEN A VM R TKQ G NF L A L SS A VKQD 641
Cdd:TIGR01398 538 L PT I L E T L ADY AP IT - K D PDL LVE H VR QR L G R Q IT QQYLDEDGV L P V ITLDPD L EAALAE A LK R DGE G EL L D L EP A LLEE 616
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1359392682 642 IGEQ VR AI V Q saha SG A HGAA R LAVMVALGA R R YV KT IL QPML P D LPVLSY Q EI EED V QLH TVG W V 707
Cdd:TIGR01398 617 LVRA VR KA V E ---- KL A NNGE R PVLLTSPRV R P YV RR IL ERFF P E LPVLSY N EI PDN V RVE TVG V V 678
PRK12720
PRK12720 EscV/YscV/HrcV family type III secretion system export apparatus protein;
32-707
1.44e-158
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 183699 [Multi-domain]
Cd Length: 675
Bit Score: 474.59
E-value: 1.44e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 32 R A D LF LA AFIVAV V ALF ILPLP QAAL D GM I SL NL AA SV V LL TVST Y VPSAVS FS S FP A LLL F TTL F RLAL N I ASCK L I LL 111
Cdd:PRK12720 14 R Q D IV LA VMLLVA V FMM ILPLP TWMV D IL I AI NL MF SV I LL MIAI Y LRDPLE FS V FP S LLL I TTL Y RLAL T I STSR L V LL 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 112 HAN AG HVI DAFG RL VVG N N VV VG GV VF LV I AV VQFIVI A KGSERVAEV G ARFSLD A MPGKQMSID A D L RAG I I S ADEAR E 191
Cdd:PRK12720 94 QHD AG EIV DAFG KF VVG G N LA VG LI VF TI I TI VQFIVI T KGSERVAEV S ARFSLD G MPGKQMSID G D M RAG V I D ADEAR R 173
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 192 R R EKLEQ ES QMH GAMDGAMKFVKGDAIAG LVIAFI NI VA GI AV G TLM H G M DIGT A LQR YA I L TV GDG MAS QIPSLL V SI A 271
Cdd:PRK12720 174 L R QHVQK ES RLL GAMDGAMKFVKGDAIAG IIVILV NI IG GI II G VMQ H D M SASE A VNT YA V L SI GDG LCG QIPSLL I SI T 253
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 272 AGI VT TRV A trd ARQ RQ - L GEQ L GE Q L G AH P R AL LI AA L VL AG F LVV PGFP KWS FA LI A VALG A F A LTQLKR K TTAPSFN 350
Cdd:PRK12720 254 AGI IV TRV P --- GEK RQ n L ANE L SS Q I G RQ P Q AL WL AA V VL ML F ALI PGFP FIT FA FL A ALVA A P A ILLRRK K SVVSANG 330
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 351 LIHVAGRV G AAD D gqpakv S HAA G VTS L I a VS LA DD L R S alnl A Q L QAALSNAKARVDA D I G TVF P RITLND D ERASAG T 430
Cdd:PRK12720 331 VEAGGSEE G PEG D ------ S MVP G ACP L M - LR LA PT L H S ---- A D L IRDIDALRWFLFE D L G VPL P EVNIEV D PELTEK T 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 431 YRI -- Y LQD VL AAHGALKPGW LL WDGV A P L PERAERQ P aea F G p FATAL W VKP D --- G A PPD G - KWLTSEAALA A HVEQI 504
Cdd:PRK12720 400 LTV ll Y QEP VL SLSLPPQALL LL IGPD A S L VGDSQTL P --- N G - MGQIC W LTK D qae Q A QGF G l DVFAGSQRIS A LLKCV 475
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 505 VREHAD E LL G I QET QA L VHLVRRDHP ELV G EL T R LV P LQRVT E V L R RL LA E Q V P IR N LR V IF ES L IT WAP N E p D DV IA L V 584
Cdd:PRK12720 476 LLRYMG E FI G V QET RY L MDAMEKRYG ELV K EL Q R QL P VGKIA E I L Q RL VS E R V S IR D LR T IF GT L VE WAP R E - K DV VM L T 554
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 585 E L VR VD LRR M I TD R HAGAARQ L R V VLFEQNLQER I ENAVMR T KQ G NFL ALSS AVKQD I GEQVRAIVQ sahasgah GAAR L 664
Cdd:PRK12720 555 E Y VR IA LRR H I LR R FNHEGKW L P V LRIGEGIENL I RESIRQ T SA G TYS ALSS RHSTQ I LQLIEQALK -------- QSQK L 626
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 1359392682 665 AVMVALGA RR YVKT I LQPM L P DLPVLS Y QE IEEDVQLHT VG WV 707
Cdd:PRK12720 627 VLVTSVDV RR FLRK I IERT L F DLPVLS W QE LGDEAEIKV VG SI 669
PRK15337
PRK15337 EscV/YscV/HrcV family type III secretion system export apparatus protein;
27-705
3.20e-147
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 237946 [Multi-domain]
Cd Length: 686
Bit Score: 445.59
E-value: 3.20e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 27 IG A SP R AD L FLAAFI V AVV A LF I L PLP QAAL D GM I S LN LAASVVLLTV S T Y VPSAV SFS S FP AL LL F TTLFRLAL N I ASC 106
Cdd:PRK15337 7 NQ A RS R PE L IILVLM V MII A ML I I PLP TYLV D FL I G LN IVLAILVFMG S F Y IDRIL SFS T FP SI LL I TTLFRLAL S I STS 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 107 K LILL H A N AG HV I DA FG RL V V G NNV VVG G V V F LVIA VVQFIVI A KGSERVAEV G ARFSLD A MPGKQMSIDADL R AGII S A 186
Cdd:PRK15337 87 R LILL D A D AG EI I TT FG QF V I G DSL VVG F V I F SIVT VVQFIVI T KGSERVAEV A ARFSLD G MPGKQMSIDADL K AGII D A 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 187 D EAR ERR EK LE Q ESQ MH G AM DGAMKF V KGDAIAG LV I A F I N IVA GI A VG TLM HGMD IGT AL QR Y A ILT V GDG MAS QIP S L 266
Cdd:PRK15337 167 D GVK ERR SV LE R ESQ LY G SF DGAMKF I KGDAIAG II I I F V N LIG GI S VG MTQ HGMD LSS AL ST Y T ILT I GDG LVA QIP A L 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 267 L V SI A AG IVT TRV ATRD arq RQ LG EQLGE QL GAH P RA L LIA A LVLAGFLVV PGFP KWS F A L I AV A LG AFALTQLK RK TTA 346
Cdd:PRK15337 247 L I SI S AG FIV TRV NGDS --- DN LG RNIMS QL LSN P FV L VVT A ILALSIGLL PGFP LPV F L L L AV V LG VLFYFKKF RK KKK 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 347 PSFNLIHVA G RVGAAD D GQPAKVSHAA G VTSLIA ------- VSLADDL R SA L NLAQ L QAA L sna KARVDA D I G TVF P R I T 419
Cdd:PRK15337 324 SAAEPDTSG G EAPLDI D EKAGSSLGLI G DLDKVI petvpli LLVPEAR R PD L EKEN L AER L --- RSQFFI D Y G VRL P D I L 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 420 L NDD E RASAGTYRIYLQDVL AA HGALKPGWLLWDGVAPLPERAERQ P AEAFGPFATAL WV KPDGA ---- PPDGKWLTSEA 495
Cdd:PRK15337 401 L RYS E GLDDNSIVVLINEIR AA QFTIYFDLHRVVNYSDELVSLGIN P TIIDSGGEQYY WV PHEDT ekla KLGYVLRSAID 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 496 A L AAHVEQIVREHAD E LL GIQET QA L VHLVRRDH P E L VG E LT R LVPL QR VT EVL R RLL A E QVP IRN LRV I F E S L IT WAP N 575
Cdd:PRK15337 481 E L YHCLSVLLLHNIN E FF GIQET KH L LDQLEKKY P D L LK E VY R HATV QR IS EVL Q RLL S E RIS IRN MKL I M E A L AL WAP R 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 576 E p D DVI A LVE L VR VD L R R M I TDRH A GAAR q LR V V LFEQNLQER I ENAVMR T KQ G N FL A L SS A VKQDIGEQVRAIVQSAHA 655
Cdd:PRK15337 561 E - K DVI M LVE H VR GA L A R Y I CHKF A AGGE - LR A V VLSAEVEDA I RKGIRQ T SG G T FL N L DP A ESENLMDLLTLALDDLGI 638
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 1359392682 656 SGAH gaar LAVM V ALGA RR Y VK TILQPML P D L P VLS YQ EI EED V QLHTVG 705
Cdd:PRK15337 639 AHRD ---- IVLL V SVDI RR F VK KLIEGRF P E L E VLS FG EI ADS V EVNVIK 684
flhA
PRK12792 flagellar biosynthesis protein FlhA; Reviewed
32-705
3.82e-97
flagellar biosynthesis protein FlhA; Reviewed
Pssm-ID: 237205
Cd Length: 694
Bit Score: 315.13
E-value: 3.82e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 32 R A D LFL A AF IVA VV A LFI LP L P QAAL D GMISLNL A A SV VL L T V STYVPSAVS FS S FP AL LL FT TL F RLALNIA SCK LIL L 111
Cdd:PRK12792 15 R R D FGF A VG IVA IL A VLF LP V P AVLI D IGLAFSI A L SV LI L M V ALWIQRPLE FS A FP TV LL IA TL L RLALNIA TTR LIL S 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 112 HAN ----- AGHVI DA F GRL V VGNNV V V G G VVF LVIAV V Q F I VI A KG SE R V AEVGARF S LDA M PGKQM S IDADL R AG I I SA 186
Cdd:PRK12792 95 NGQ egvda AGHVI AG F SQF V MSGDF V I G L VVF AILIT V N F L VI T KG AT R I AEVGARF T LDA I PGKQM A IDADL S AG L I DD 174
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 187 D EA RE RR EK LE Q ES QMH G A MDGA M KFV K GDAIA G L V I AFI NI VA GI AV G TLM HGM DI G T A LQRYAI L T VGDG MA SQIP S L 266
Cdd:PRK12792 175 K EA QR RR RE LE E ES AFF G S MDGA S KFV R GDAIA S L I I IAV NI FG GI II G VTR HGM PL G Q A ADVFTK L S VGDG LV SQIP A L 254
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 267 L VS I AAG IVTTRVA TR - D A R Q RQ LG eqlge QLGA H PRAL LI AAL VLAGFLV VPG F P KWS FAL IAVALGAF A L T QLK R KTT 345
Cdd:PRK12792 255 I VS L AAG LLVSKGG TR g S A E Q AV LG ----- QLGA Y PRAL SV AAL LMFVLAI VPG L P FLP FAL LGGVMAFV A Y T IPR R RAA 329
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 346 APS fnlihv A GRVGAADDGQP A KVSHAAG V ----- T SL I AVS L ADD L RSA L NL A QLQA A LSN AK A R -- VDADI G T V F P R I 418
Cdd:PRK12792 330 RAA ------ A EAAKVKREEES A QAEAKDS V keqlr T AE I ELC L GKQ L AAQ L QG A HAEL A HRV AK M R rk FAKQY G F V V P E I 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 419 T L N D DERASAG TY R I YLQDVLA A HGA L K PG W LL W --- DG VA P - L P ERAE R Q P ae AFG pf AT ALWV -------- KP DG AP P 486
Cdd:PRK12792 404 K L T D SLSLPPK TY Q I KIHGTVV A TQE L R PG E LL V vvg DG PR P d V P GEEV R E P -- AFG -- MK ALWV pdafanev RR DG FE P 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 487 dgkw LTSEAA L AA H VEQIV R EHADE LL GIQETQ AL vh L V R R D h PE LVGELTRLV P L Q ---- RVTE VL RR LLAE Q V P IRNL 562
Cdd:PRK12792 480 ---- VDNASV L LT H LSEVI R NNLPQ LL SYKDMR AL -- L D R L D - PE YKRLIDDIC P S Q isys GLQA VL KL LLAE R V S IRNL 552
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 563 RV I F E SLITW AP N -- EPDDV ial V E L VR VDLRRM I TDRHA -- G AARQ LR V ----- VL F E Q N L QERIENA V MR tkqgn F LA 633
Cdd:PRK12792 553 HL I L E AVAEI AP H ar RAEQI --- A E H VR MRIAQQ I CGDLS dn G VLKV LR L gnrwd LA F H Q S L KRDAKGE V VE ----- F DI 624
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1359392682 634 LSSA V K Q DIG E QVR AI vqsah ASGAHGAARLAVMV A LG AR R YV KT I LQPML P D LPVLS YQ EI EED V QLHTV G 705
Cdd:PRK12792 625 DPRL V E Q FGT E ASE AI ----- RERMDQGHQFVLVT A PE AR P YV RM I IERLF P T LPVLS HL EI ARG V EIKSL G 691
PRK05910
PRK05910 type III secretion system protein; Validated
37-707
1.43e-42
type III secretion system protein; Validated
Pssm-ID: 168293
Cd Length: 584
Bit Score: 163.42
E-value: 1.43e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 37 LA A FIVAVVALF I L PLPQ AA LD GMISL N L A A S VVLLTVSTYVP S AV S FSS FP A L L L FTT L F RL A LN I AS CKL IL LHAN A G 116
Cdd:PRK05910 12 MV A IPLCILFTL I F PLPQ WL LD FGLCI N F A L S LSIVFWVFSLR S SA S ARL FP S L F L YLC L L RL G LN L AS TRW IL SSGW A S 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 117 HV I DAF G RLVVGNNVVVGGVVF L VIAV V Q F I VI A KGSER V AEV G ARFSL D A M PGKQMS I DADL RA G II S ADEARERREK L 196
Cdd:PRK05910 92 PL I FSL G NFFSLGSLPAALTAC L LLFL V N F L VI T KGSER I AEV R ARFSL E A L PGKQMS L DADL VS G RA S YSRVSKQKNS L 171
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 197 EQ ES QMHG AM D G AMK FVKGDAI AGLVIAFI NI V A giavg TLMH G MDI G T A LQRYAILTV GD GMA SQ I P S LL V S I AA GIVT 276
Cdd:PRK05910 172 LE ES DFFS AM E G VFR FVKGDAI MSCILLGV NI L A ----- ATFL G RAT G Y A VGDLWLTVL GD ALV SQ V P A LL T S C AA ATLI 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 277 TR V ATRDARQRQ L GEQL g EQ LGA H P R all IA AL V L AGFLVV PG F PK WSFALIA V A L gafalt Q L KR K TTAPSFN L IHVAG 356
Cdd:PRK05910 247 SK V GEKESLLQH L LDYY - EQ SRQ H F R --- FI AL L L CSLACI PG A PK APILGFS V L L ------ F L AY K NPSSGET L LFQKE 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 357 R V gaaddgqpakvshaagvt SLIAVS L A D DLRS al N L A Q L QA A lsn A KARVDADI G T VFP RIT ---- LNDDE R ASAGTYR 432
Cdd:PRK05910 317 R F ------------------ EFVELA L P D EGVG -- N P A N L YR A --- A REEIFQEL G V VFP EEI vvrh VESSP R LIFSGQE 373
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 433 I YL QDVLAAH galkpgw L L wdgvaplperaerqpaeafgpfatalwvkpdgap P DGKW L TS EA ALAAH V EQI V R E h AD E L 512
Cdd:PRK05910 374 V YL RELSCPA ------- I L ---------------------------------- P SLRN L AP EA ISERF V KRL V E E - FQ E V 411
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 513 L GI QETQAL vhlvrrdh P ELVG E LTRLV plqrvte V LR R L LA E Q V PIRNLRV I F E SLITWA p NEPDDVIA LVE L VR VD L R 592
Cdd:PRK05910 412 A GI SIEEII -------- P KKIS E NSLVF ------- L LR A L VR E R V SLHLFPK I L E AIAVYG - SQGKSSEE LVE K VR KY L G 475
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359392682 593 RM I TDRHAGAARQ L R V VLFEQNLQER I EN avmrtkqgnfla LS S AVKQ D IG E Q V R A I V Q S AHASGAH G AA R l A VMVALGA 672
Cdd:PRK05910 476 KQ I GRSLWNRQDT L E V ITIDSHVEQF I RD ------------ SY S KSNP D MN E K V V A Q V K S LLERSGE G NF R - A IVTGCET 542
650 660 670
....*....|....*....|....*....|....*
gi 1359392682 673 R RYV K TILQ P ML PDL P VLS YQ E IE E DVQLHTV G W V 707
Cdd:PRK05910 543 R FEL K KMVD P YF PDL L VLS HS E LP E EIPISLL G A V 577
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
