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Conserved domains on  [gi|1360939381|ref|WP_106151473|]
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ABC-type transport auxiliary lipoprotein family protein [Marinilabilia salmonicolor]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 5-197 9.18e-25

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 95.83  E-value: 9.18e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381   5 ILLSLITAFLVAGCGSQKEAI-KRYYVIESlndsTMISTDPMHQPDAWCEVDEVEVYPAFDTRRIVLRDNSHQVRYFGNH 83
Cdd:COG3218     9 LLLLLLLALLLAGCSSLPAPPpPTLYDLTP----PLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381  84 EWAVPPADFLTPIIIDYLAESGTFARVAARFWERTPDYRLQTTIFNLEVVSSQRKTfEAHLNLKFDLIDVDTDAILLTHT 163
Cdd:COG3218    85 RWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDDRDGRVVASRR 163

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1360939381 164 ADRKSPLRERD-------LNLLASEISlifhEELAAFASKT 197
Cdd:COG3218   164 FEARVPAASADaagvvaaLNQALDQLL----AEIVAWLAAQ 200
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 5-197 9.18e-25

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 95.83  E-value: 9.18e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381   5 ILLSLITAFLVAGCGSQKEAI-KRYYVIESlndsTMISTDPMHQPDAWCEVDEVEVYPAFDTRRIVLRDNSHQVRYFGNH 83
Cdd:COG3218     9 LLLLLLLALLLAGCSSLPAPPpPTLYDLTP----PLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381  84 EWAVPPADFLTPIIIDYLAESGTFARVAARFWERTPDYRLQTTIFNLEVVSSQRKTfEAHLNLKFDLIDVDTDAILLTHT 163
Cdd:COG3218    85 RWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDDRDGRVVASRR 163

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1360939381 164 ADRKSPLRERD-------LNLLASEISlifhEELAAFASKT 197
Cdd:COG3218   164 FEARVPAASADaagvvaaLNQALDQLL----AEIVAWLAAQ 200
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 44-142 1.84e-09

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 54.25  E-value: 1.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381  44 PMHQPDAWCEVDEVEVYPAFDTRRIVLRDNSHQVRYFGNHEWAVPPADFLTPIIIDYLAESGTFARVAARFWER--TPDY 121
Cdd:pfam03886   8 AASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAFPWPLggTPDY 87

                          90       100
                  ....*....|....*....|.
gi 1360939381 122 RLQTTIFNLEVVSSQRKTFEA 142
Cdd:pfam03886  88 RLQVDVRRFDGRPGGNAVLEA 108
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 5-197 9.18e-25

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 95.83  E-value: 9.18e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381   5 ILLSLITAFLVAGCGSQKEAI-KRYYVIESlndsTMISTDPMHQPDAWCEVDEVEVYPAFDTRRIVLRDNSHQVRYFGNH 83
Cdd:COG3218     9 LLLLLLLALLLAGCSSLPAPPpPTLYDLTP----PLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381  84 EWAVPPADFLTPIIIDYLAESGTFARVAARFWERTPDYRLQTTIFNLEVVSSQRKTfEAHLNLKFDLIDVDTDAILLTHT 163
Cdd:COG3218    85 RWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDDRDGRVVASRR 163

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1360939381 164 ADRKSPLRERD-------LNLLASEISlifhEELAAFASKT 197
Cdd:COG3218   164 FEARVPAASADaagvvaaLNQALDQLL----AEIVAWLAAQ 200
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 1-183 8.38e-18

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 77.72  E-value: 8.38e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381   1 MRLPILLSLITAFLVAGCGSQKEaiKRYYViesLNDSTMISTDPMHQPDAWCEVDEVEVYPAFDTRRIVLRDNSHQVRYF 80
Cdd:COG3009     3 RPLRLLLLLLLALLLAACASSPP--TRYYT---LPPPAAPAAAAAAAAAPVIEVGPVSLPDYLDRPQIVYRTGDGRLVIA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381  81 GNHEWAVPPADFLTPIIIDYLAESGTFARVAARFWER--TPDYRLQTTIFNLEVVSSQRKTFEAHlnlkFDLIDVDTDAI 158
Cdd:COG3009    78 ENHRWAEPLSDQLTRALAANLAARLPGARVAAQPWPLagRPDYRLRVDVTRFDGRPDGQAVLSAQ----WSLRRGGGGGP 153

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1360939381 159 LLTHTADRKSPLRERD-----------LNLLASEIS 183
Cdd:COG3009   154 LLSRRFSIEEPLAGDGydalvaalsqaLAQLADQIA 189
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 44-142 1.84e-09

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 54.25  E-value: 1.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1360939381  44 PMHQPDAWCEVDEVEVYPAFDTRRIVLRDNSHQVRYFGNHEWAVPPADFLTPIIIDYLAESGTFARVAARFWER--TPDY 121
Cdd:pfam03886   8 AASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAFPWPLggTPDY 87

                          90       100
                  ....*....|....*....|.
gi 1360939381 122 RLQTTIFNLEVVSSQRKTFEA 142
Cdd:pfam03886  88 RLQVDVRRFDGRPGGNAVLEA 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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