|
Name |
Accession |
Description |
Interval |
E-value |
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
112-812 |
0e+00 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 575.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 112 EETGVEMPQITIIASKDRVFS--RVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGLGMRVNIGIRGLDPDRSR 189
Cdd:COG4772 17 AEAATTLETVVVTGSRAAEARlkDVPGSVSVVDREELENQAATSLREVLRRVPGVNVQEEDGFGLRPNIGIRGLGPRRSR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 190 SVLVLEDGVPVALSPYGEPEMYYTPVMDRMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSG 269
Cdd:COG4772 97 GITLLEDGIPIAPAPYGDPAAYYFPDLERMERIEVLRGAAALRYGPQTVGGAINFVTRTIPTAFGGELRVTGGSFGYRRT 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 270 LVNYGNTFGNTGIQTSLLRKKAD----NigpTEFDITDFNTKFLFNINENSELGMKLGIYNESSNsTYIGINQVMFDrgg 345
Cdd:COG4772 177 HASVGGTVGNFGYLVEYSRKRGDgfrdN---SGFDINDFNAKLGYRLSDRQELTLKFQYYDEDAN-TPGGLTDAQFD--- 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 346 ADDFLRLAPDDRLDVRRYSLSFNHQYRFNKNVRLKTIAYGYTTTRNWnrqdfTINNSNTPPSNwtgivwgdveipggaiy 425
Cdd:COG4772 250 ADPRQSYRPADQFDTRRTQLSLRYEHQLSDNTTLTTTAYYNDFSRNW-----YIRQNTADPNT----------------- 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 426 MRNSTGNRNRQFEVAGIEPRLEVDYKVFDLKNELIVGTRYLYERAFEQRVDGTRAGVKSGN-LVEDEVRTGYALAAYIQN 504
Cdd:COG4772 308 PGLGLRGNPRGYRSYGIEPRLTHRFELGGVPHTLEVGLRYHREEEDRKQYVNTYGQGRSGAgLRRDRRFSADALAAYAQN 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 505 KVNLSPKLDLNMGLRFENFDYERDIRRRSFPGLGVRDTvlvagNVINEIIPGFGFNYRPAQTLNVFGGIHKGYAPPRTKD 584
Cdd:COG4772 388 RFELTGRLTLTPGLRYEHIRRDRTDRYSTRTGGDDSGS-----NSYSEFLPGLGLLYQLTDNLQLYANVSRGFEPPTFGD 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 585 AITSLGDVLDLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQIIPVSeSSGGVGFGLVNGGATLNRGVETALVMDLS 664
Cdd:COG4772 463 LAYGNGGNPDLKPEKSWNYELGTRGRIGNGLSAEVALFYIDYDNELGSCS-AAGGDRSTFTNAGETRHQGLELALDYDLL 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 665 NLFGFsktRLIYDINATFLKATFSEDRfqnGVNINGNKTPYAPDWFINSALTLETeSGLGLRLVGNFVGSQFGDELNTIQ 744
Cdd:COG4772 542 KGGGL---GLPLFAAYTYTDAEFTSDF---GPVFAGNRLPYVPRHQLTAGLGYEH-GGWTANLNGRYVSEQFTDAANTVA 614
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370911050 745 psvDGRIGIIPSYKVFDAVISYQIkNWNSKFNLSVKNLTDERYIASRRP---QGIRVGIPRLITVGYQFTF 812
Cdd:COG4772 615 ---DGSFGKIPSYTVLDLSASYDF-GKNLSLFAGVNNLFDKRYIASRAPnyaAGIRPGPPRTVYAGLRLKF 681
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
137-812 |
9.11e-56 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 203.07 E-value: 9.11e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 137 SVTYIDAKEIQTINPLSGNEVLRRSPGVhVVDEEGLGMRVNIGIRGLDPDRsrsVLVLEDGVPVALSPYGEPEMYYTPVM 216
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGV-SVTRGGGGGGSTISIRGFGPDR---TLVLVDGLPLASSNYGRGVDLNTIPP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 217 DRMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSI------YIQGGQGGFFSGLVNYGNTFGNTGIQTSLLRKK 290
Cdd:cd01347 77 ELIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVtagygsDNSGSSGGGGFDVSGALADDGAFGARLYGAYRD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 291 ADN-------IGPTEFDITDFNTKFLFNINENSELGMKLGIY---NESSNSTYIGINQVMFDRGGADDFLRLAPDDRLDV 360
Cdd:cd01347 157 GDGtidgdgqADDSDEERYNVAGKLDWRPDDDTRLTLDAGYQdqdADGPGGTLPANGTGSSLGGGPSSNTNGDRDWDYRD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 361 R---RYSLSFNHQYrFNKNVRLKTIAYgYTTTRNWNRQDFTINNSNtppsnwtgivwgdveipGGAIYMRNSTGNRNRQF 437
Cdd:cd01347 237 RyrkRASLGLEHDL-NDTGWTLRANLS-YSYTDNDGDPLILNGGNN-----------------AAGGDLGRSGYSSERDT 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 438 EVAGIEPRLEVDYKVFDLKNELIVGTRYLYERaFEQRVdgtragvksgnlvedevrtgyaLAAYIQNKVNLSPKLDLNMG 517
Cdd:cd01347 298 TQLGFDAGLNAPFGTGPVAHTLTLGVEYRREE-LDEKQ----------------------TALYAQDTIELTDDLTLTLG 354
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 518 LRFENFDYErdirrrsfpGLGVRDTVLVAGNVINEIIPGFGFNYRPAQTLNVFGGIHKGYAPPR----TKDAITSLGDVL 593
Cdd:cd01347 355 LRYDHYDQD---------SKDTIAGGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSlgelYGGGSHGGTAAV 425
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 594 ---DLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQIIPVSESSGGVG-FGLVNGGATLNRGVETALVMDLSNLFGF 669
Cdd:cd01347 426 gnpNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLvTVYVNGGKARIRGVELEASYDLTDGLGL 505
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 670 sktrliyDINATFLKATFSEDRFQNgvniNGNKTPYAPDWFINSALTLE-TESGLGLRLVGNFVGSQFGDELNTiqpsvd 748
Cdd:cd01347 506 -------TGSYTYTDTEVKRTDGAT----TGNRLPGIPKHTANLGLDYElPDEGLTAGGGVRYRGKQYADTANG------ 568
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370911050 749 GRIGIIPSYKVFDAVISYQIkNWNSKFNLSVKNLTDERYIASRRPQG----IRVGIPRLITVGYQFTF 812
Cdd:cd01347 569 NNTVKVPGYTLVDLSASYQF-TKNLTLRLGVNNLFDKDYYTSLSVRGsglyGYYGPGRTYYLSVSYKF 635
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
134-810 |
9.79e-45 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 171.44 E-value: 9.79e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 134 VPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGLGMRVNIGIRGLDPDRSRSVLVLeDGVPvALSPYG----EPE 209
Cdd:TIGR01783 2 IPQSVSVITRQELEDQQAGSLSEALQRVPGVVVGGSGGTTQFGNITIRGFGLEVDIDNVYL-DGVP-LLSRGNlaivDPA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 210 MyytpvMDRmagVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSGLVNYGNTFG---NTGIQTSL 286
Cdd:TIGR01783 80 M-----VER---VEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGadgTFRGRLNG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 287 LRKKADN--IGPTEfDITDFNTKFLFNINENSEL--------GMKLGIYNESSNSTYIGINQVMFDR--GGADDflrlAP 354
Cdd:TIGR01783 152 ARQDGDSfyDGAGE-ETRLGATATDWQLDDRTLLrlgayyqkERDRGGYGGLPASGGTSGRDLSSDRylGTSSN----RN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 355 DDRLDVRRYSLSFNHQyrFNKNVRLKTIAYGY--TTTRNWNRQDFTINNS---------NTPPSNWTGIVWGDveipgga 423
Cdd:TIGR01783 227 YDDREYLSYGLSLEYQ--FNDVWTGKQNLRYSyfDTDSNQVQASGYSSDGglfgrsltvVNVKQDRVQIDAGL------- 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 424 iymrnstgnrNRQFEVAGIEPRLEVDYKVFDLKNELIVGTRYLYERAFEqRVDGTRAGVKSGNLVEDE--VRTGYALAAY 501
Cdd:TIGR01783 298 ----------DGEFETGPIEHDLLLGVSYGQRTTNRFNNTGYPSDNIYS-LTATSSARTDIGDSPKDRalSSTTKALNGV 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 502 IQNKVNLSPKLDLNMGLRFENFDYERDIRRRSFPGLGVRDTVLvagnvineiiPGFGFNYRPAQTLNVFGGIHKGYAPPR 581
Cdd:TIGR01783 367 ALQRILLADKWTLTLGGRYDSVDVKSNNGVAGSTGKRDDSQFT----------PSLGVAYKPTDDWSLYASYAESFKPGG 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 582 TKD-AITSLGDvlDLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQIipVSESSGGVgfGLVNGGATLNRGVETALV 660
Cdd:TIGR01783 437 YYPkGAGNSGD--ILEPEKGKNYELGVRYDLGDSLLATAALFRITKDNQL--VQDPVNGT--FSVNAGKTRNRGVELEAR 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 661 MDLSnlfgfskTRLIYDINATFLKATFSEDrfqNGVNINGNKTPYAPDWFINSALTLET---ESGLGLRLVGNFVGSQFG 737
Cdd:TIGR01783 511 GYLT-------PGLSLSAGYTYTDAEFTED---TNGDTQGNTVPFVPKHTASLWASYAPpvgDNGLTLGGGVQYTGKAYV 580
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 738 DELNTIQpsvdgrigiIPSYKVFDAVISYQI---KNWNskFNLSVKNLTDERYIAS----RRPQGIRVGIPRL--ITVGY 808
Cdd:TIGR01783 581 DGGNTGK---------VPSYTVVDLSVRYDLtkkKNLT--LALNVNNLFDRDYYTSgyrwGPSAYIYPGAPRTvgLSVSY 649
|
..
gi 1370911050 809 QF 810
Cdd:TIGR01783 650 DF 651
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
342-811 |
2.45e-30 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 125.65 E-value: 2.45e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 342 DRGGADDFLRLAPDDRLDVRRYSLSFNHQYRFNKNVRLK-TIAYGYTTTRNWNRQDFTINNSNtppsnwtgivwgdveip 420
Cdd:pfam00593 42 GYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWLSTlRLGLRYSSLDGDYTSNSSGLSGA----------------- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 421 ggaiymrNSTGNRNRQFEVAGIEPRLEVDykvFDLKNELIVGTRYLYERA---FEQRVDGTRAGVKSGNLVEDEVRTGYA 497
Cdd:pfam00593 105 -------GDYLSDDRLYGLYGLDGDLELS---LDLSHDLLLGVELRTAGLdyrRLDDDAYDPYDPANPSSSSYSDTTTDS 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 498 LAAYIQNKVNLSPKLDLNMGLRFENFDYERDIRRRSFPGLGVRDTVLVagnvineiiPGFGFNYRPAQTLNVFGGIHKGY 577
Cdd:pfam00593 175 YGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNFSRSYSAFS---------PRLGLVYKPTDNLSLYASYSRGF 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 578 APPRTKDAITSLGDVL---------DLEAEKSVNYELGLRTEPlKWLFLEATGFVMNFSNQI--IPVSESSGGVGFGLVN 646
Cdd:pfam00593 246 RAPSLGELYGSGSGGGggavaggnpDLKPETSDNYELGLKYDD-GRLSLSLALFYIDIKNLItsDPDGPGLGGTVYTYTN 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 647 GGATLNRGVETALVMDLsnlfgfsktrliYDINATFLKATFSEDRFQNGVNINGNKTPYAPDWFINSALTLETESG-LGL 725
Cdd:pfam00593 325 VGKARIRGVELELSGRL------------WGLGLSGGGYTYTDADDDADADDTGNPLPNVPRHTANLGLTYDFPLGgWGA 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 726 RLVGNFVGSQ---FGDELNTIQpsvdgrigiIPSYKVFDAVISYQIKNwNSKFNLSVKNLTDERY----IASRRPQGIRV 798
Cdd:pfam00593 393 RLGARYVGSGerrYGDAANTFK---------TPGYTLVDLSAGYRLNK-NLTLRLGVNNLFDKYYkryySSGGGNLGGYP 462
|
490
....*....|...
gi 1370911050 799 GIPRLITVGYQFT 811
Cdd:pfam00593 463 GPGRTFYLGLSYK 475
|
|
| CarbopepD_reg_2 |
pfam13715 |
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
37-123 |
2.15e-22 |
|
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.
Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 91.88 E-value: 2.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 37 VSGQVKS-PEGEIIPFANILVLGTVKGTYTNLDGTFQIYDLEDGEYTIKVSAVGYKSFTKTIQIINGIVRELDLVFEETG 115
Cdd:pfam13715 1 ISGTVVDeNTGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTYTLVVSFVGYKTQEKKVTVSNDNTLDVNFLLKEDA 80
|
....*...
gi 1370911050 116 VEMPQITI 123
Cdd:pfam13715 81 LLLDEVVV 88
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
135-785 |
7.90e-13 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 72.12 E-value: 7.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 135 PGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVdeeGLGMRVNIGIRGLDpdrSRSVLVLEDGV--------PVALSPyg 206
Cdd:PRK13483 51 PASISVITREDLENRFYRDLTDALLDVPGVVVT---GGGDRTDISLRGMG---SQYTLILVDGKrqssretrPNSDGP-- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 207 EPEMYYTPVMDRMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSG-LVNYGNTFGNTGIQTS 285
Cdd:PRK13483 123 GVEQAWTPPLAAIERIEVIRGPMSSLYGSDAIGGVINIITRKVPNEWQGEVRLDTTLQENSDSgNVYQANFFVNGPLIKD 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 286 LL---------RKKADNI--GPTEFDITDFNTKFLFNINENSELGMKLGIYNESSNSTyIGINQVMFDRGGADDFLRLAP 354
Cdd:PRK13483 203 LLglqlygqytQREEDDIegGYRDKDARSLTAKLALTPNEDHDIMLEVGTSNQERDST-VGKTVAPLAPGESCGRRGCPE 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 355 DDRLDVRR--YSLSFNHQYRF-NKNVRLKtiaygYTTTRNWNRqDFTINNSNTpPSNWTgivwgdveIPGGAIYMRnSTG 431
Cdd:PRK13483 282 SSTTEYERstVSLSHTGRWDFgTSDTYIQ-----HEEFDNKSR-EMKIKNTDF-QSSLV--------APLGQEHTL-TFG 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 432 nrnrqfevagieprleVDYKVFDLKNElivgtrylyerafeqrvdgtragvkSGNLVEDEVR-TGYALAAYIQNKVNLSP 510
Cdd:PRK13483 346 ----------------AAYNHQDLTDE-------------------------TSNQISDLTDiSRTQWAVFSEDEWRIAD 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 511 KLDLNMGLRfenFDYERDIRRRSFPGL-GVrdtvlvagnvineiipgfgfnYRPAQTLNVFGGIHKGYAPPRTKDAITSL 589
Cdd:PRK13483 385 DFALTGGLR---LDHDENFGGHVSPRVyGV---------------------WNLAPSWTVKGGVSTGFRAPSLRQTTPDW 440
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 590 GDVL---------DLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQII----PVSESSGGVG-FG-----LVNGGAT 650
Cdd:PRK13483 441 GQVSrggniygnpDLKPETSLNKELGLYYDLGSGLTASLTVFYNEFKDKITrvacPATQCTDGPNqFGadpttYVNIDEA 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 651 LNRGVETALVMDLSNLFGFSKtrliydiNATFlkaTFSEdrfQNGVNINGNKTPYAPDWFINSALTLETESGLGLRLVGN 730
Cdd:PRK13483 521 VTQGVEASLSYPITSTLSLSG-------NYTY---TDSE---QKSGAYKGSPLNQLPKHLFQASLNWEPTDRLNSWARVN 587
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1370911050 731 FVGSQFGDELNTIQPSVdgrigIIPSYKVFDAVISYQIKNwNSKFNLSVKNLTDE 785
Cdd:PRK13483 588 YRGEESQPTTGPSSSSF-----IAPSYTFLDLGANYQLTD-NLKLSAGIYNLFDK 636
|
|
| Peptidase_M14NE-CP-C_like |
cd11308 |
Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, ... |
37-99 |
3.94e-03 |
|
Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; This domain is found C-terminal to the M14 carboxypeptidase (CP) N/E subfamily containing zinc-binding enzymes that hydrolyze single C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes enzymatically active members (carboxypeptidase N, E, M, D, and Z), as well as non-active members (carboxypeptidase-like protein 1, -2, aortic CP-like protein, and adipocyte enhancer binding protein-1) which lack the critical active site and substrate-binding residues considered necessary for activity. The active N/E enzymes fulfill a variety of cellular functions, including prohormone processing, regulation of peptide hormone activity, alteration of protein-protein or protein-cell interactions and transcriptional regulation. For M14 CPs, it has been suggested that this domain may assist in folding of the CP domain, regulate enzyme activity, or be involved in interactions with other proteins or with membranes; for carboxypeptidase M, it may interact with the bradykinin 1 receptor at the cell surface. This domain may also be found in other peptidase families.
Pssm-ID: 200604 [Multi-domain] Cd Length: 76 Bit Score: 36.73 E-value: 3.94e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370911050 37 VSGQVKSPEGEIIPFANILVLGTVKGTYTNLDGTFQIYdLEDGEYTIKVSAVGYKSFTKTIQI 99
Cdd:cd11308 2 IKGFVTDATGNPIANATISVEGINHDVTTAKDGDYWRL-LLPGTYNVTASAPGYQPVTKTVTV 63
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
112-812 |
0e+00 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 575.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 112 EETGVEMPQITIIASKDRVFS--RVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGLGMRVNIGIRGLDPDRSR 189
Cdd:COG4772 17 AEAATTLETVVVTGSRAAEARlkDVPGSVSVVDREELENQAATSLREVLRRVPGVNVQEEDGFGLRPNIGIRGLGPRRSR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 190 SVLVLEDGVPVALSPYGEPEMYYTPVMDRMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSG 269
Cdd:COG4772 97 GITLLEDGIPIAPAPYGDPAAYYFPDLERMERIEVLRGAAALRYGPQTVGGAINFVTRTIPTAFGGELRVTGGSFGYRRT 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 270 LVNYGNTFGNTGIQTSLLRKKAD----NigpTEFDITDFNTKFLFNINENSELGMKLGIYNESSNsTYIGINQVMFDrgg 345
Cdd:COG4772 177 HASVGGTVGNFGYLVEYSRKRGDgfrdN---SGFDINDFNAKLGYRLSDRQELTLKFQYYDEDAN-TPGGLTDAQFD--- 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 346 ADDFLRLAPDDRLDVRRYSLSFNHQYRFNKNVRLKTIAYGYTTTRNWnrqdfTINNSNTPPSNwtgivwgdveipggaiy 425
Cdd:COG4772 250 ADPRQSYRPADQFDTRRTQLSLRYEHQLSDNTTLTTTAYYNDFSRNW-----YIRQNTADPNT----------------- 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 426 MRNSTGNRNRQFEVAGIEPRLEVDYKVFDLKNELIVGTRYLYERAFEQRVDGTRAGVKSGN-LVEDEVRTGYALAAYIQN 504
Cdd:COG4772 308 PGLGLRGNPRGYRSYGIEPRLTHRFELGGVPHTLEVGLRYHREEEDRKQYVNTYGQGRSGAgLRRDRRFSADALAAYAQN 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 505 KVNLSPKLDLNMGLRFENFDYERDIRRRSFPGLGVRDTvlvagNVINEIIPGFGFNYRPAQTLNVFGGIHKGYAPPRTKD 584
Cdd:COG4772 388 RFELTGRLTLTPGLRYEHIRRDRTDRYSTRTGGDDSGS-----NSYSEFLPGLGLLYQLTDNLQLYANVSRGFEPPTFGD 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 585 AITSLGDVLDLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQIIPVSeSSGGVGFGLVNGGATLNRGVETALVMDLS 664
Cdd:COG4772 463 LAYGNGGNPDLKPEKSWNYELGTRGRIGNGLSAEVALFYIDYDNELGSCS-AAGGDRSTFTNAGETRHQGLELALDYDLL 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 665 NLFGFsktRLIYDINATFLKATFSEDRfqnGVNINGNKTPYAPDWFINSALTLETeSGLGLRLVGNFVGSQFGDELNTIQ 744
Cdd:COG4772 542 KGGGL---GLPLFAAYTYTDAEFTSDF---GPVFAGNRLPYVPRHQLTAGLGYEH-GGWTANLNGRYVSEQFTDAANTVA 614
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370911050 745 psvDGRIGIIPSYKVFDAVISYQIkNWNSKFNLSVKNLTDERYIASRRP---QGIRVGIPRLITVGYQFTF 812
Cdd:COG4772 615 ---DGSFGKIPSYTVLDLSASYDF-GKNLSLFAGVNNLFDKRYIASRAPnyaAGIRPGPPRTVYAGLRLKF 681
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
118-790 |
3.33e-75 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 257.06 E-value: 3.33e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 118 MPQITIIASK-DRVFSRVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGLGMRVNIgiRGLDpDRSRSVLVLED 196
Cdd:COG1629 1 LEEVVVTATRtDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAGQISI--RGFG-GGGNRVLVLVD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 197 GVPVALSPYGEPEMYYTPVMDrMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSGLVNYGNT 276
Cdd:COG1629 78 GVPLNDPSGGDGGLSYIDPED-IERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSLSGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 277 FGNTGIQTSLLRKKADN-IGPTEFDITDFNTKFLFNINENSELGMKLGIYNESSNSTYIGINQVMFDRGGADDFLRLAPD 355
Cdd:COG1629 157 NGKLAYRLSASYRDSDGyRDNSDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQDSPGYLTLAALRPRGAMDDGTNPYSN 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 356 DRLDVRRYSLSFNHQYR-FNKNVRLKTIAYgytttrnWNRQDFTINNSNTPPSNWTGIVwgdveipggaiymrNSTGNRN 434
Cdd:COG1629 237 DTDDNTRDRYSLSLEYEhLGDGLKLSASAY-------YRYDDTDLDSDFTPTPADGGTL--------------EQTDFDN 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 435 RQFevaGIEPRLEVDYKvFDLKNELIVGTRYLYER--AFEQRVDGTRAGVKSGNLVEDEVRTGYALAAYIQNKVNLSPKL 512
Cdd:COG1629 296 RTY---GLELRLTYDLG-FGGKHTLLVGLDYQRQDldGSGYPLDLGSGSLPTLTSGADDDGTTTSLALYAQDTYKLTDKL 371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 513 DLNMGLRFENFDYERDIRRRSFPGLGVRDTVlvagnviNEIIPGFGFNYRPAQTLNVFGGIHKGYAPPRTKDAITSLGDV 592
Cdd:COG1629 372 TLTAGLRYDYVSYDVDDTVTGTDSASGSRSY-------SAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTDP 444
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 593 L-----DLEAEKSVNYELGLRTEPL-KWLFLEATGFVMNFSNQIIPVS-ESSGGVGFGLVNGGATLNRGVETALVMDLSN 665
Cdd:COG1629 445 YsvgnpDLKPETSTNYELGLRYRLLdGRLSLSLALFYSDVDNEILSVPlPNDSGFSTYYTNAGKARSYGVELELSYQLTP 524
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 666 lfgfsktRLIYDINATFLKATFSEDrFQNGVNINGNKTPYAPDWFINSALTLETESGLGLRLVGNFVGSQFGDELNTiqp 745
Cdd:COG1629 525 -------GLSLNASYSYTDAKFDDD-TDGSADLDGNRLPGVPPLTANLGLTYEFPGGWSLGLGVRYVGDRYLDDANT--- 593
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 1370911050 746 svdgrIGIIPSYKVFDAVISYQIKNwNSKFNLSVKNLTDERYIAS 790
Cdd:COG1629 594 -----QGAPGGYTLVDLGAGYRFGD-NLTLSLGVDNLFDKKYATS 632
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
112-772 |
9.63e-57 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 205.48 E-value: 9.63e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 112 EETGVEMPQITIIASK-DRVFSRVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGLGMRVNIGIRGLDPDRsrs 190
Cdd:COG4771 21 AEDATELEEVVVTATRtEQSLSDAPASVSVITAEEIEKLGATDLADALRLLPGVSVTRSGGRGGSSGISIRGLGGDR--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 191 VLVLEDGVPVALSPYGEPEMYYTPVMDRMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSGL 270
Cdd:COG4771 98 VLVLIDGVPVNNPALGGGGDLSYIPPDDIERIEVIRGPASALYGSDAIGGVINIITKKPTDELEGSVSLGYGSNGNGTYS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 271 --VNYGNTFGNTGIQTSLLRKKADNI---------GPTEFDITDFNTKFLFNINENSELGMKLGIYNESSNSTYiginqv 339
Cdd:COG4771 178 gsLSLGGPGDKLSFLLSGSYRDRDGYldyrnggfvGNSGYERYNLNAKLGYRLSDNHRLSLSGGYSRQDRDGGP------ 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 340 mFDRGGADDFLRLAPDDRLDVRRYSLSFNHQYRFNKNVRLkTIAYGYTTTRNWNRQDFTINNSNTPpsnwtgivwgdvei 419
Cdd:COG4771 252 -PTLGDTEISSDNAGDRDTTTDRGNYSLRYNGDLGDNLDL-SLYYSRTDRDSTNGSLGGSTGSFSD-------------- 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 420 pggaiymrnstgNRNRQFEVagiepRLEVDYKvFDLKNELIVGTRYLYERafeqrvdgtragVKSGNLVEDEVRTGYALA 499
Cdd:COG4771 316 ------------SDDTTYGL-----ELDLTYP-LGGNHTLTLGAEYRYDD------------LDSSSFLGGADASRDTYG 365
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 500 AYIQNKVNLSPKLDLNMGLRFENFDYerdirrrsfpglgvrdtvlVAGNVINEIIPGFGFNYRPAQTLNVFGGIHKGYAP 579
Cdd:COG4771 366 LFAQDEWKLTDKLTLTAGLRYDYYST-------------------FGASNYTAFSPRLGLRYDLSDNLTLRASYGRGFRA 426
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 580 PRTKDAITSLGDVL--------DLEAEKSVNYELGLRTEPLKW-LFLEATGFVMNFSNQIIPVSESSG-GVGFGLVNGGA 649
Cdd:COG4771 427 PSLAELYGSGTGTPgryvlgnpDLKPETSDNYELGLEYRLGNGgLSLSLTGFYTDIKDLIVLVPVGPGpGDVLQYENVGK 506
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 650 TLNRGVETALVMDLSNLFGFSktrliydINATFLKATFSEdrfqngvNINGNKTPYAPDWFINSALTLETESGLGLRLVG 729
Cdd:COG4771 507 ARTYGLELELKYRLGKGLTLT-------ASYTYLDSKIDD-------GDTGEPLPNVPPHKANLGLDYRLPKWWLLLLLT 572
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1370911050 730 NFVGSQFGDELNTIQPSVDgrigiiPSYKVFDAVISYQI-KNWN 772
Cdd:COG4771 573 RYYGGRYVTPPSGRLEGYT------PGYTLLDLRASYKLtKNLT 610
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
137-812 |
9.11e-56 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 203.07 E-value: 9.11e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 137 SVTYIDAKEIQTINPLSGNEVLRRSPGVhVVDEEGLGMRVNIGIRGLDPDRsrsVLVLEDGVPVALSPYGEPEMYYTPVM 216
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGV-SVTRGGGGGGSTISIRGFGPDR---TLVLVDGLPLASSNYGRGVDLNTIPP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 217 DRMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSI------YIQGGQGGFFSGLVNYGNTFGNTGIQTSLLRKK 290
Cdd:cd01347 77 ELIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVtagygsDNSGSSGGGGFDVSGALADDGAFGARLYGAYRD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 291 ADN-------IGPTEFDITDFNTKFLFNINENSELGMKLGIY---NESSNSTYIGINQVMFDRGGADDFLRLAPDDRLDV 360
Cdd:cd01347 157 GDGtidgdgqADDSDEERYNVAGKLDWRPDDDTRLTLDAGYQdqdADGPGGTLPANGTGSSLGGGPSSNTNGDRDWDYRD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 361 R---RYSLSFNHQYrFNKNVRLKTIAYgYTTTRNWNRQDFTINNSNtppsnwtgivwgdveipGGAIYMRNSTGNRNRQF 437
Cdd:cd01347 237 RyrkRASLGLEHDL-NDTGWTLRANLS-YSYTDNDGDPLILNGGNN-----------------AAGGDLGRSGYSSERDT 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 438 EVAGIEPRLEVDYKVFDLKNELIVGTRYLYERaFEQRVdgtragvksgnlvedevrtgyaLAAYIQNKVNLSPKLDLNMG 517
Cdd:cd01347 298 TQLGFDAGLNAPFGTGPVAHTLTLGVEYRREE-LDEKQ----------------------TALYAQDTIELTDDLTLTLG 354
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 518 LRFENFDYErdirrrsfpGLGVRDTVLVAGNVINEIIPGFGFNYRPAQTLNVFGGIHKGYAPPR----TKDAITSLGDVL 593
Cdd:cd01347 355 LRYDHYDQD---------SKDTIAGGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSlgelYGGGSHGGTAAV 425
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 594 ---DLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQIIPVSESSGGVG-FGLVNGGATLNRGVETALVMDLSNLFGF 669
Cdd:cd01347 426 gnpNLKPEKSKQYELGLKYDPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLvTVYVNGGKARIRGVELEASYDLTDGLGL 505
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 670 sktrliyDINATFLKATFSEDRFQNgvniNGNKTPYAPDWFINSALTLE-TESGLGLRLVGNFVGSQFGDELNTiqpsvd 748
Cdd:cd01347 506 -------TGSYTYTDTEVKRTDGAT----TGNRLPGIPKHTANLGLDYElPDEGLTAGGGVRYRGKQYADTANG------ 568
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370911050 749 GRIGIIPSYKVFDAVISYQIkNWNSKFNLSVKNLTDERYIASRRPQG----IRVGIPRLITVGYQFTF 812
Cdd:cd01347 569 NNTVKVPGYTLVDLSASYQF-TKNLTLRLGVNNLFDKDYYTSLSVRGsglyGYYGPGRTYYLSVSYKF 635
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
134-812 |
2.31e-55 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 202.03 E-value: 2.31e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 134 VPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGlGMRVNIGIRGLDPdrsrSVLVLEDGVPVALSPYGEPEMYyt 213
Cdd:COG4774 9 TPQSVTVVTRELIEDQGATSLADALRNVPGVTFGAGEG-GNGDSFSIRGFSA----SGDIYVDGLRDPGQYRRDTFNL-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 214 pvmDRmagVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSGLVNYGNTFG-NTGIQTSLLRKKAD 292
Cdd:COG4774 82 ---ER---VEVLKGPASVLYGRGSPGGVINLVTKRPTDEPFTEVTLTYGSDGQRRATLDVNGPLGdDLAYRLNGMYRDSD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 293 N-IGPTEFDITDFNTKFLFNINENSELGMkLGIYNESSNSTYIGINQVMFDRGGADDFLRL--APDDRLDVRRYSLSFNH 369
Cdd:COG4774 156 SyRDGVDNDRWGIAPSLTWRLGDRTRLTL-DYEYQDDDRTPDYGVPAVANGRPVDVDRSTFygQPDDYSDSETDSATLRL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 370 QYRFNKNVRLKTIAYGYTTTRNWnrqdftiNNSNTPPSNWTGIVWgdveipggaiymrNSTGNRNRQFEVAGIEPRLEVD 449
Cdd:COG4774 235 EHDFNDNWTLRNALRYSDYDRDY-------RNTYPTGGNATGTVT-------------RSAYRRDQDNDTLSNQTDLTGK 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 450 YKVFDLKNELIVGTRYLYERaFEQRVDGTRAGVKSGNL--------VEDEVRTGYA-------LAAYIQNKVNLSPKLDL 514
Cdd:COG4774 295 FDTGGVKHTLLAGVEYSRED-SDNARYSGGGTAPTVNLynpvygapVTGPTLGGADndsrtdtTGLYLQDTISLTDRWSL 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 515 NMGLRFENFDYERDIRRRSFPGLGVRDtvlvagnviNEIIPGFGFNYRPAQTLNVFGGIHKGYAPPRTKDAITSLGDVLD 594
Cdd:COG4774 374 LAGLRYDRFDTDYTDRTTGATTSSYDD---------SAFSPRAGLVYKPTPNLSLYASYSTSFNPGGGAPSLSNAGQALD 444
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 595 LeaEKSVNYELGLRTEPL-KWLFLEATGFVMNFSNQIIPVSESSGGVgfglVNGGATLNRGVETALVMDLS---NLFGfs 670
Cdd:COG4774 445 P--EKSRQYEVGVKWDLLdGRLSLTAALFRIEKTNVRTTDPANPGVY----VQTGEQRSRGVELEATGELTpgwSVLA-- 516
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 671 ktrliydiNATFLKATFSEDrfqNGVNINGNKTPYAPDWFINSALTLE-TESGLGLRLVGNFVGSQFGDELNTIQpsvdg 749
Cdd:COG4774 517 --------GYTYLDAEITKS---ANAANVGNRLPNVPRHSASLWTTYDlPLPGLTLGGGVRYVGSRYADAANTVK----- 580
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370911050 750 rigiIPSYKVFDAVISYQI-KNWnsKFNLSVKNLTDERYIASRRPQG-IRVGIPRLITVGYQFTF 812
Cdd:COG4774 581 ----LPSYTRFDAGASYRLnKNL--TLRLNVNNLTDKRYYASAYGSGyVTPGAPRTVLLSASYRF 639
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
134-810 |
9.79e-45 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 171.44 E-value: 9.79e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 134 VPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGLGMRVNIGIRGLDPDRSRSVLVLeDGVPvALSPYG----EPE 209
Cdd:TIGR01783 2 IPQSVSVITRQELEDQQAGSLSEALQRVPGVVVGGSGGTTQFGNITIRGFGLEVDIDNVYL-DGVP-LLSRGNlaivDPA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 210 MyytpvMDRmagVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSGLVNYGNTFG---NTGIQTSL 286
Cdd:TIGR01783 80 M-----VER---VEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLGadgTFRGRLNG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 287 LRKKADN--IGPTEfDITDFNTKFLFNINENSEL--------GMKLGIYNESSNSTYIGINQVMFDR--GGADDflrlAP 354
Cdd:TIGR01783 152 ARQDGDSfyDGAGE-ETRLGATATDWQLDDRTLLrlgayyqkERDRGGYGGLPASGGTSGRDLSSDRylGTSSN----RN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 355 DDRLDVRRYSLSFNHQyrFNKNVRLKTIAYGY--TTTRNWNRQDFTINNS---------NTPPSNWTGIVWGDveipgga 423
Cdd:TIGR01783 227 YDDREYLSYGLSLEYQ--FNDVWTGKQNLRYSyfDTDSNQVQASGYSSDGglfgrsltvVNVKQDRVQIDAGL------- 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 424 iymrnstgnrNRQFEVAGIEPRLEVDYKVFDLKNELIVGTRYLYERAFEqRVDGTRAGVKSGNLVEDE--VRTGYALAAY 501
Cdd:TIGR01783 298 ----------DGEFETGPIEHDLLLGVSYGQRTTNRFNNTGYPSDNIYS-LTATSSARTDIGDSPKDRalSSTTKALNGV 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 502 IQNKVNLSPKLDLNMGLRFENFDYERDIRRRSFPGLGVRDTVLvagnvineiiPGFGFNYRPAQTLNVFGGIHKGYAPPR 581
Cdd:TIGR01783 367 ALQRILLADKWTLTLGGRYDSVDVKSNNGVAGSTGKRDDSQFT----------PSLGVAYKPTDDWSLYASYAESFKPGG 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 582 TKD-AITSLGDvlDLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQIipVSESSGGVgfGLVNGGATLNRGVETALV 660
Cdd:TIGR01783 437 YYPkGAGNSGD--ILEPEKGKNYELGVRYDLGDSLLATAALFRITKDNQL--VQDPVNGT--FSVNAGKTRNRGVELEAR 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 661 MDLSnlfgfskTRLIYDINATFLKATFSEDrfqNGVNINGNKTPYAPDWFINSALTLET---ESGLGLRLVGNFVGSQFG 737
Cdd:TIGR01783 511 GYLT-------PGLSLSAGYTYTDAEFTED---TNGDTQGNTVPFVPKHTASLWASYAPpvgDNGLTLGGGVQYTGKAYV 580
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 738 DELNTIQpsvdgrigiIPSYKVFDAVISYQI---KNWNskFNLSVKNLTDERYIAS----RRPQGIRVGIPRL--ITVGY 808
Cdd:TIGR01783 581 DGGNTGK---------VPSYTVVDLSVRYDLtkkKNLT--LALNVNNLFDRDYYTSgyrwGPSAYIYPGAPRTvgLSVSY 649
|
..
gi 1370911050 809 QF 810
Cdd:TIGR01783 650 DF 651
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
81-810 |
3.83e-44 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 170.08 E-value: 3.83e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 81 YTIKVSAVGYKSftktiqiiNGIVRELDLVFEETGVEMPQITIIASKDRVFS-----------------RVPGSVTYIDA 143
Cdd:COG4773 3 ALLAGSGLAAAA--------AGALAQAAAAAAAEATTLPEVTVTGTAEGTGGytakssstatkldtplrETPQSVSVVTR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 144 KEIQTINPLSGNEVLRRSPGVHVVDEEGlGMRVNIGIRGLDPDRsrsvlVLEDGVPVALSPYGEPEMYytpVMDRmagVE 223
Cdd:COG4773 75 QLIEDQGATTLDDALRNVPGVTVSSYDG-GGRDSFSIRGFSIDN-----YLRDGLPLGGFGGGQPDTA---NLER---VE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 224 ILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYiqggqggffsglVNYGNtFGNTGIQT----------SLL------ 287
Cdd:COG4773 143 VLKGPAGLLYGAGSPGGLVNLVTKRPTAEPQGEVS------------LSAGS-WDTYRATAdvggplnedgTLRyrlnaa 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 288 -------RKKADN----IGPT-EFDITDfNTKFLFNinenselgmklGIYNESSNSTYIGINQVMFDRGGADDFLRL-AP 354
Cdd:COG4773 210 yedgdsfRDGVDNrrtlIAPSlDWDLTD-DTTLTLG-----------AEYQDDDSTGDRGFLPLDGTLLDLPRSTNLgEP 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 355 DDRLDVRRYSLSFNHQYRFNKNVRLKTiAYGYTTTRNWNRQDFTINNSNTPPSNwtgivwgdveipggaiyMRNSTGNRN 434
Cdd:COG4773 278 WDYYDTETTTLFAELEHRFNDDWSLRA-NARYSDSDRDGRSAYAYGAPDAATGT-----------------LTRYASARD 339
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 435 RQFEVAGIEPRLEVDYKVFDLKNELIVGTRYlyeraFEQRVDGTRAGVKS--------GNLVEDEVRTGYA------LAA 500
Cdd:COG4773 340 GDSRSDSLDANLNGKFETGGLEHTLLVGADY-----SRYDSDSDSATAGTiniynpvyGNLPEPDFDASDTdtttrqTGL 414
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 501 YIQNKVNLSPKLDLNMGLRFENFDYERDIRrrsfpgLGVRDTVLVAgnviNEIIPGFGFNYRPAQTLNVFGGIHKGYAPP 580
Cdd:COG4773 415 YAQDQISLTDRLSLLLGGRYDWYETDSTNR------LGGSTTSYDD----SAFTPRAGLVYDLTPGLSLYASYSESFEPQ 484
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 581 rtkDAITSLGDVLDleAEKSVNYELGLRTEPLKW-LFLEATGFVMNFSNqiipVSESSGGVGFGLVNGGATLNRGVETAL 659
Cdd:COG4773 485 ---SGADNNGNPLD--PETGKQYEAGVKGELFDGrLNATLAVFDITQKN----VATTDPDNPNFYVQVGEVRSRGVELEL 555
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 660 VMDLS---NLFGfsktrliydiNATFLKATFSEDrfqnGVNINGNKTPYAPDW----FINSALTLETESGLGLRLVGNFV 732
Cdd:COG4773 556 SGELTpglNLIA----------GYTYTDAKITKD----ADALEGKRLTNVPRHtaslWTTYRFPSGALKGLGLGGGVRYV 621
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 733 GSQFGDELNTIQpsvdgrigiIPSYKVFDAVISYQI-KNWnsKFNLSVKNLTDERYIASRRPQG-IRVGIPR--LITVGY 808
Cdd:COG4773 622 GERYGDAANTFT---------LPSYTLVDAGARYDLgKNW--TLQLNVNNLFDKKYYASSGSRGyVYYGAPRnvRLSLSY 690
|
..
gi 1370911050 809 QF 810
Cdd:COG4773 691 KF 692
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
342-811 |
2.45e-30 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 125.65 E-value: 2.45e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 342 DRGGADDFLRLAPDDRLDVRRYSLSFNHQYRFNKNVRLK-TIAYGYTTTRNWNRQDFTINNSNtppsnwtgivwgdveip 420
Cdd:pfam00593 42 GYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWLSTlRLGLRYSSLDGDYTSNSSGLSGA----------------- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 421 ggaiymrNSTGNRNRQFEVAGIEPRLEVDykvFDLKNELIVGTRYLYERA---FEQRVDGTRAGVKSGNLVEDEVRTGYA 497
Cdd:pfam00593 105 -------GDYLSDDRLYGLYGLDGDLELS---LDLSHDLLLGVELRTAGLdyrRLDDDAYDPYDPANPSSSSYSDTTTDS 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 498 LAAYIQNKVNLSPKLDLNMGLRFENFDYERDIRRRSFPGLGVRDTVLVagnvineiiPGFGFNYRPAQTLNVFGGIHKGY 577
Cdd:pfam00593 175 YGLYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGGGDNFSRSYSAFS---------PRLGLVYKPTDNLSLYASYSRGF 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 578 APPRTKDAITSLGDVL---------DLEAEKSVNYELGLRTEPlKWLFLEATGFVMNFSNQI--IPVSESSGGVGFGLVN 646
Cdd:pfam00593 246 RAPSLGELYGSGSGGGggavaggnpDLKPETSDNYELGLKYDD-GRLSLSLALFYIDIKNLItsDPDGPGLGGTVYTYTN 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 647 GGATLNRGVETALVMDLsnlfgfsktrliYDINATFLKATFSEDRFQNGVNINGNKTPYAPDWFINSALTLETESG-LGL 725
Cdd:pfam00593 325 VGKARIRGVELELSGRL------------WGLGLSGGGYTYTDADDDADADDTGNPLPNVPRHTANLGLTYDFPLGgWGA 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 726 RLVGNFVGSQ---FGDELNTIQpsvdgrigiIPSYKVFDAVISYQIKNwNSKFNLSVKNLTDERY----IASRRPQGIRV 798
Cdd:pfam00593 393 RLGARYVGSGerrYGDAANTFK---------TPGYTLVDLSAGYRLNK-NLTLRLGVNNLFDKYYkryySSGGGNLGGYP 462
|
490
....*....|...
gi 1370911050 799 GIPRLITVGYQFT 811
Cdd:pfam00593 463 GPGRTFYLGLSYK 475
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
121-392 |
7.31e-27 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 111.12 E-value: 7.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 121 ITIIASK-DRVFSRVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGLGMRVNIGIRGLDPDRsrsVLVLEDGVP 199
Cdd:COG4206 1 VVVTATRlEQSKSDLTGSVTVIDAEELERSGATSLADALRRVPGVQVSSSGGPGSAASISIRGLGSNQ---TLVLIDGVP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 200 VALSPYGEPEMYYTPVMDrMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSGLVNYGNTFGN 279
Cdd:COG4206 78 LNDPSLGGVDLSLIPPDD-IERIEVLKGAASALYGSDAIGGVINITTKKGKKGFKGSVSASYGSFGTRRLSASLSGGAGK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 280 TGIQTSLLRKKADNIGPTE--------FDITDFNTKFLFNINENSELGMKLGiYNESSNSTYIGINQVMFDRGGADDFLR 351
Cdd:COG4206 157 FSYSLSASYRRSDGYRYNDpdlrnndgYENTSLNARLGYKLGDNGSLSLSGG-YSDSERGYPGAVGSDRNLRLSLSLEYK 235
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1370911050 352 LAPDDRLDVRRYSLSFNHQYRFNKNVRLKTIAYGYTTTRNW 392
Cdd:COG4206 236 LSDGWSLLLLAYYYYDRDYEDGGGDSAGTSNTDGARAGLSY 276
|
|
| CarbopepD_reg_2 |
pfam13715 |
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
37-123 |
2.15e-22 |
|
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.
Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 91.88 E-value: 2.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 37 VSGQVKS-PEGEIIPFANILVLGTVKGTYTNLDGTFQIYDLEDGEYTIKVSAVGYKSFTKTIQIINGIVRELDLVFEETG 115
Cdd:pfam13715 1 ISGTVVDeNTGEPLPGATVYVKGTTKGTVTDADGNFELKNLPAGTYTLVVSFVGYKTQEKKVTVSNDNTLDVNFLLKEDA 80
|
....*...
gi 1370911050 116 VEMPQITI 123
Cdd:pfam13715 81 LLLDEVVV 88
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
121-810 |
1.72e-20 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 96.69 E-value: 1.72e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 121 ITIIASKDRVF-SRVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVvdeeGLGMRVN---IGIRGLDPDRsrsVLVLED 196
Cdd:TIGR01785 4 VTVTATRTRQVlSEAPASVSVISGEQIESKQANNLADALNTVPGVDV----TGGGRPPgqsINIRGLQDNR---VLVVVD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 197 GVPVALSPYGEPEMYYTPVMDRMAGVEILKGSGQILFGPQTIGGVINYITANPPQdeegsiyiqggqggffsgLVNYGNT 276
Cdd:TIGR01785 77 GARQNYQRGGAHNGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFRTKDAAD------------------LLRPGQL 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 277 FgntGIQTSLLRKKADNIGPTE----FDITDfNTKFLFNINENSELGMKLGIYNESSNSTYIGINqvmfdrGGADDFLRL 352
Cdd:TIGR01785 139 F---GGLAKLSYGSNNNSFGGSvavaGRLDD-NLDALVAATYRDGGNYRNGNKEEATNSAYVQKN------LLAKLGWQL 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 353 APDDRLD--VRRYSLSFNHQYrfnkNVRLKT-IAYG---YTTTRNWNRQDFTINNSNTPPS----NWTGIVWGDVEIPGG 422
Cdd:TIGR01785 209 DDAQRLEfsYFTTEGSLDEAQ----NSGPGTeYVLGsssTLLASSTRDRSATLTYNWTPEDnpwlDATASLYYNRTENDN 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 423 AIYMRNSTGNRNRQFEVAGIEPRLEVDYKVFDLKNeLIVGTRYLYERAFEQRVDGTRAGVKSGNLVEDEVRTGyalAAYI 502
Cdd:TIGR01785 285 DRSARGVGREEGYQYTTYGATLQNTSRFDVASWST-LTYGVDWMKDKRRTESFDPNSVTTIVPNPPSAKEYFF---GLFL 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 503 QNKVNL-SPKLDLNMGLRFENFDYErdirrrsfPGLGVR-DTVLVAGNVINeiiPGFGFNYRPAQTLNVFGGIHKGY-AP 579
Cdd:TIGR01785 361 QDNIPLlDDRLTLSAGLRYDHYKLS--------PKTTADtEAVDRSYSRWS---PSLGLSYKPVDWLTLYASYSQGFrAP 429
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 580 PRTKDAITSLGDV----------LDLEAEKSVNYELGLRTEPLKWLF------LEATGFVMNFSNQIIPVSESSGGVGFG 643
Cdd:TIGR01785 430 SIDELYGTGDHPGtpggytfapnPNLKPETSKTWELGANLSFDNLLLdndqlqFKVAYFYNDVKDFIDLTIGVTDNVTAG 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 644 LVNGGATLN------RGVETALVMDLSNLF-GFSKTRLIY-DINATFLKATFSEDRFQNGVNIngnktpYAPDWfinsal 715
Cdd:TIGR01785 510 MNNITQYVNidgariRGIEASASYDAGLWAtGLSYGYTIGkDQNTNQWLSNIPPLKLVVTVGY------RFPDR------ 577
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 716 tletesGLGLRLVGNFVGSQfgDELNTIQPSVDGRIGIIPSYKVFDAVISYQIKNWNS-KFNLSVKNLTDERYiasRRPQ 794
Cdd:TIGR01785 578 ------RLDLGAKAAYYERQ--SESPTTEDVAANGLLTTPGYTVVDLYATYQPNAVKGlTVRFGVNNLTDRKY---TPAQ 646
|
730
....*....|....*....
gi 1370911050 795 GIRVGIP-RLITVG--YQF 810
Cdd:TIGR01785 647 SVPGAGPgRNFKGSvkYQF 665
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
132-241 |
8.10e-17 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 76.54 E-value: 8.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 132 SRVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGlGMRVNIGIRGLDPDRsrsVLVLEDGVPVALSPYGEPEMY 211
Cdd:pfam07715 3 RDTPGSVSVVTAEDIEDQGATNLADALRGVPGVSVSSGGG-GGGSSISIRGFGSNR---VLVLVDGVPLNSGGGGSVDLN 78
|
90 100 110
....*....|....*....|....*....|
gi 1370911050 212 YTPVMDrMAGVEILKGSGQILFGPQTIGGV 241
Cdd:pfam07715 79 SIDPED-IERVEVLKGPASALYGSGAIGGV 107
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
135-785 |
7.90e-13 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 72.12 E-value: 7.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 135 PGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVdeeGLGMRVNIGIRGLDpdrSRSVLVLEDGV--------PVALSPyg 206
Cdd:PRK13483 51 PASISVITREDLENRFYRDLTDALLDVPGVVVT---GGGDRTDISLRGMG---SQYTLILVDGKrqssretrPNSDGP-- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 207 EPEMYYTPVMDRMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGQGGFFSG-LVNYGNTFGNTGIQTS 285
Cdd:PRK13483 123 GVEQAWTPPLAAIERIEVIRGPMSSLYGSDAIGGVINIITRKVPNEWQGEVRLDTTLQENSDSgNVYQANFFVNGPLIKD 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 286 LL---------RKKADNI--GPTEFDITDFNTKFLFNINENSELGMKLGIYNESSNSTyIGINQVMFDRGGADDFLRLAP 354
Cdd:PRK13483 203 LLglqlygqytQREEDDIegGYRDKDARSLTAKLALTPNEDHDIMLEVGTSNQERDST-VGKTVAPLAPGESCGRRGCPE 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 355 DDRLDVRR--YSLSFNHQYRF-NKNVRLKtiaygYTTTRNWNRqDFTINNSNTpPSNWTgivwgdveIPGGAIYMRnSTG 431
Cdd:PRK13483 282 SSTTEYERstVSLSHTGRWDFgTSDTYIQ-----HEEFDNKSR-EMKIKNTDF-QSSLV--------APLGQEHTL-TFG 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 432 nrnrqfevagieprleVDYKVFDLKNElivgtrylyerafeqrvdgtragvkSGNLVEDEVR-TGYALAAYIQNKVNLSP 510
Cdd:PRK13483 346 ----------------AAYNHQDLTDE-------------------------TSNQISDLTDiSRTQWAVFSEDEWRIAD 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 511 KLDLNMGLRfenFDYERDIRRRSFPGL-GVrdtvlvagnvineiipgfgfnYRPAQTLNVFGGIHKGYAPPRTKDAITSL 589
Cdd:PRK13483 385 DFALTGGLR---LDHDENFGGHVSPRVyGV---------------------WNLAPSWTVKGGVSTGFRAPSLRQTTPDW 440
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 590 GDVL---------DLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQII----PVSESSGGVG-FG-----LVNGGAT 650
Cdd:PRK13483 441 GQVSrggniygnpDLKPETSLNKELGLYYDLGSGLTASLTVFYNEFKDKITrvacPATQCTDGPNqFGadpttYVNIDEA 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 651 LNRGVETALVMDLSNLFGFSKtrliydiNATFlkaTFSEdrfQNGVNINGNKTPYAPDWFINSALTLETESGLGLRLVGN 730
Cdd:PRK13483 521 VTQGVEASLSYPITSTLSLSG-------NYTY---TDSE---QKSGAYKGSPLNQLPKHLFQASLNWEPTDRLNSWARVN 587
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1370911050 731 FVGSQFGDELNTIQPSVdgrigIIPSYKVFDAVISYQIKNwNSKFNLSVKNLTDE 785
Cdd:PRK13483 588 YRGEESQPTTGPSSSSF-----IAPSYTFLDLGANYQLTD-NLKLSAGIYNLFDK 636
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
137-787 |
1.04e-12 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 71.59 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 137 SVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGLGMRVNIGIRGLDPDRSrsvLVLEDGV----PVALSPYGEPEMY- 211
Cdd:PRK13486 45 SVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYT---LILIDGVrqggSSDVTPNGFSAMNt 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 212 -YTPVMDRMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSIYIQGGqggffsglVNYGNTFGNTGiQTSLLRKk 290
Cdd:PRK13486 122 gFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNADKWLSSVNAGLN--------LQESNKWGNSS-QFNFWSS- 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 291 adniGPTEFDITDFNTKFLFNINENSEL-------GMKLGIYNESSNstyiginqvmFDRGGADDFLRLAPDdrldVRRY 363
Cdd:PRK13486 192 ----GPLVDDSVSLQVRGSTQQRQGSSVtslsdtaATRIPYPTESQN----------YNLGARLDWKASEQD----VLWF 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 364 SLSFNHQYRFNKNVRLKTIAYGYTTTRNWNRQDFTINNSNTPP-SNW-TGIVWgdveipggaiymrNSTGNRNRQFEVAG 441
Cdd:PRK13486 254 DMDTTRQRYDNRDGQLGSLTGGYDRTLRYERNKISAGYDHTFTfGTWkSYLNW-------------NETENKGRELVRSV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 442 IEP-RLEVDYKVFDLKNELIVGTRYLYERAFEQR---VDGT--RAGVKSGNLVEDEVRTGY--ALAAYIQNKVNLSPKLD 513
Cdd:PRK13486 321 LKRdKWGLAGQPRELKESNLILNSLLLTPLGESHlvtVGGEfqSSSMKDGVVLASTGETFRqkSWSVFAEDEWHLTDALA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 514 LNMGLRFENFD-YERDIRRRSFPGLGVRDTVLVAGNVINeiipgfgfNYRPAQtlnvFGGIHKGYAPPRTKDAITSLGDV 592
Cdd:PRK13486 401 LTAGSRYEHHEqFGGHFSPRAYLVWDVADAWTLKGGVTT--------GYKAPR----MGQLHKGISGVSGQGKTNLLGNP 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 593 lDLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQIIPVSESSGGVGFglVNGGATLNRGVEtalvmdlsnlfgFSKT 672
Cdd:PRK13486 469 -DLKPEESVSYEAGVYYDNPAGLNANVTGFMTDFSNKIVSYSINDNTNSY--VNSGKARLHGVE------------FAGT 533
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 673 RLIYDINATF-LKATFSEDRFQNGVNiNGNKTPYAPDWFINSAL----TLETESGLGLRLVGN---FvgSQFGDELNTIQ 744
Cdd:PRK13486 534 LPLWSEDVTLsLNYTWTRSEQRDGDN-KGAPLSYTPEHMVNAKLnwqiTEEVASWLGARYRGKtprF--TQNYSSLSAVQ 610
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1370911050 745 PSV-DGRIGIIPSYKVFDAVISYQIKNwNSKFNLSVKNLTDERY 787
Cdd:PRK13486 611 KKVyDEKGEYLKAWTVVDAGLSWKMTD-ALTLNAAVNNLLNKDY 653
|
|
| CarboxypepD_reg |
pfam13620 |
Carboxypeptidase regulatory-like domain; |
37-110 |
7.76e-12 |
|
Carboxypeptidase regulatory-like domain;
Pssm-ID: 433354 [Multi-domain] Cd Length: 81 Bit Score: 61.53 E-value: 7.76e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370911050 37 VSGQVKSPEGEIIPFANILVL----GTVKGTYTNLDGTFQIYDLEDGEYTIKVSAVGYKSFTKT-IQIINGIVRELDLV 110
Cdd:pfam13620 2 ISGTVTDPSGAPVPGATVTVTntdtGTVRTTTTDADGRYRFPGLPPGTYTVTVSAPGFKTATRTgVTVTAGQTTTLDVT 80
|
|
| TonB-Xanth-Caul |
TIGR01782 |
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane ... |
488-812 |
8.90e-12 |
|
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins]
Pssm-ID: 273804 [Multi-domain] Cd Length: 845 Bit Score: 68.90 E-value: 8.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 488 VEDEVRTGYALAAYiqnkvNLSPKLDLNMGLRFENFDYERDiRRRSFPGLGVRDTVLV---AGNVINEIIPGFGFNYRPA 564
Cdd:TIGR01782 503 VTEDTTAAYAMANF-----DTGLRLRGNVGVRYERTDQTSD-GWQSQPAANGTGSVLVpvsADRDYTDVLPSLNLAYDLT 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 565 QTLNVFGGIHKGYAPPRTKD--AITSLGDVL------------DLEAEKSVNYELGlrtepLKWLF-----LEATGFVMN 625
Cdd:TIGR01782 577 DDLVLRFAASKTITRPDFGDlaANTSLSDDGtggtvtvsggnpDLKPYESDNLDLS-----LEWYFgpgglLSAAVFYKD 651
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 626 FSNQI-----IPVSESSGGVGFGLV------NGGATLN-RGVETALVMDLSNL------FGFSktrliydINATFLKAtf 687
Cdd:TIGR01782 652 IKNFIvtttsTETNDGGGGLVVAGVlvsrpvNGGKAGKiRGVELGYQQTFDFLpgplsgFGVQ-------ANYTYVDS-- 722
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 688 SEDRFQNGVNINGNKTPYAPDWFINSALTLETeSGLGLRLVGNFVGSQFGDELNTIqpSVDGRIGIIPsYKVFDAVISYQ 767
Cdd:TIGR01782 723 EADPSVDGVQRRKLPLPGLSKNTANATLYYEK-GGFSARLSYNYRSDYLLDVGGSN--INRLDRYVDP-RGQLDLSASYQ 798
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1370911050 768 IKNWNSkFNLSVKNLTDERYIA----SRRPQGIRVGiPRLITVGYQFTF 812
Cdd:TIGR01782 799 VSDHLS-LGLQASNLTNEPSRWytggKQRPREYVET-GRTYMLGLRYKF 845
|
|
| PRK13528 |
PRK13528 |
outer membrane receptor FepA; Provisional |
121-786 |
1.38e-09 |
|
outer membrane receptor FepA; Provisional
Pssm-ID: 237413 [Multi-domain] Cd Length: 727 Bit Score: 61.70 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 121 ITIIASKDRVFSRVPGsVTYIDAKEIQT---INPLSgnEVLRRSPGVHVVDEEGLGMRVN---IGIRGLDPDRSrsvLVL 194
Cdd:PRK13528 37 MVVEATAEQELKQQPG-VSIITAEDIKKrppVNDLS--DIIRKMPGVNLTGNSASGTRGNnrqIDIRGMGPENT---LIL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 195 EDGVPVA------LSPYGE-----------PEMyytpvMDRmagVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSI 257
Cdd:PRK13528 111 IDGVPVTsrnsvrYSWRGErdtrgdtnwvpPEM-----VER---IEVIRGPAAARYGSGAAGGVVNIITKRPTNDWHGSL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 258 -YIQGGQGGFFSGLVNYGNtFGNTG--IQTSLLRKKADNIGPTEFDITDFNTkflfNINENSELGmKLGIYNESSNStyi 334
Cdd:PRK13528 183 sLYTNQPESSKEGATRRAN-FSLSGplAGDALTMRLYGNLNKTDADSWDINS----SAGTKNAAG-REGVRNKDING--- 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 335 ginqvMFDrggaddfLRLAPDDRLDVRR-YSLSFN-----HQYRFNKNVRLKTIAYGYTTTRNWnRQDFTInnsnTPPSN 408
Cdd:PRK13528 254 -----VLS-------WKMTPQQILDFEAgYSRQGNiyagdTQNSNSSAVTESLAKSGKETNRLY-RQNYGL----THNGI 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 409 WTgivWGDVEIpgGAIYmrNSTGNRNRQFEVAG-IEPRL--EVDYKVFDLKN-----------------ELIVGTRYLYE 468
Cdd:PRK13528 317 WD---WGQSRL--GFYY--EKTNNTRMNEGLAGgGEGRItaDQTFTTSRLESyrtsgelnvplnwlfeqTLTVGAEWNRD 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 469 R-----AFEQRV-DGTRAGVKSGNLVEDEVRTGYALAAYIQNKVNLSPKLDLNMGLRfenFDYERDirrrsfpglgvrdt 542
Cdd:PRK13528 390 ElndpsSTSLTVkDGDIGGISGSAADRSSKNKSEISALYVEDNIEPVPGTNLIPGLR---FDYHSE-------------- 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 543 vlvagnvineiipgFGFNYRPA--------QTLNVFGGIHKGYAPPR-----------TKD-----AITSLGDVL----D 594
Cdd:PRK13528 453 --------------FGSNWSPSlnlsqelgDYFKVKAGIARAFKAPNlyqssegyllySRGngcpkDITSGGCYLvgnkN 518
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 595 LEAEKSVNYELGLRTEPLKWlFLEATGFVMNFSNQIIPVSE-----SSGGVGFGLVNGGATLNRGVETALvmdlsnLFGF 669
Cdd:PRK13528 519 LDPEISVNKEIGLEFTVDDY-HASVTYFRNDYQNKIVAGDDvigrtASGAYILQWQNGGKAVVEGLEGNL------LVPL 591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 670 SKTRLIYDINATFLkaTFSEDRfqngvnINGNKTPYAPDWFINSALTLETESGLGLRLVGNFVGSQFGDELNTIQPSVDG 749
Cdd:PRK13528 592 MKDRLNWNTNATYM--ITSEQK------DTGNPLSVIPKYTINSTLDWQITQALSANVNWTLYGKQKPRTHAESRSEETG 663
|
730 740 750
....*....|....*....|....*....|....*....
gi 1370911050 750 RIGI--IPSYKVFDAVISYQIkNWNSKFNLSVKNLTDER 786
Cdd:PRK13528 664 GLSGkeLGAYSLVGVNVNYDI-NKNLRLNVGVSNLFDKQ 701
|
|
| btuB |
PRK10641 |
TonB-dependent vitamin B12 receptor BtuB; |
155-256 |
2.39e-09 |
|
TonB-dependent vitamin B12 receptor BtuB;
Pssm-ID: 236730 [Multi-domain] Cd Length: 614 Bit Score: 60.78 E-value: 2.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 155 NEVLRRSPGVHVVDEEGLGMRVNIGIRGLDpdrSRSVLVLEDGVPVALSPY-GEPEMYYTPV--MDRmagVEILKGSGQI 231
Cdd:PRK10641 63 NDVLRRLPGVDIAQNGGLGQLSSLFIRGTN---SSHVLVLIDGVRLNQAGIsGSADLSQIPIslVQR---IEYIRGPRSA 136
|
90 100
....*....|....*....|....*
gi 1370911050 232 LFGPQTIGGVINYITAnppQDEEGS 256
Cdd:PRK10641 137 VYGSDAIGGVVNIITT---RDKPGT 158
|
|
| PRK14050 |
PRK14050 |
TonB-dependent siderophore receptor; |
119-805 |
2.91e-07 |
|
TonB-dependent siderophore receptor;
Pssm-ID: 237595 [Multi-domain] Cd Length: 728 Bit Score: 54.04 E-value: 2.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 119 PQITIIASKDRV-FSRVPGSVTYIDAKEIQTINPLSG-NEVLRRSPGVHV----VDEEGLGMRvnigIRGLDPDRSRSVL 192
Cdd:PRK14050 63 AKATATGSKTDTpITEIPQSVSVVGRQEMDDRGVTNKvDEALRYTPGVLSqpfgTDGDTDWFY----IRGFDATQTGVFL 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 193 vleDGVPvaLSPYGEPEMYYTPVMdrMAGVEILKGSGQILFGPQTIGGVINYITANpPQDEEgsiyiqggQGGFFSGLVN 272
Cdd:PRK14050 139 ---DGLN--LFSYGFGGFQIDPFM--LERVEVLKGPASVLYGGSNPGGIVNMVSKR-PLDEP--------LYYTEIGINS 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 273 YGNTFgnTGIQTSllrKKADNIGPTEFDIT--------------DFNTKFLFNINENSELGMKLGIYnessnSTYIGINQ 338
Cdd:PRK14050 203 YGNAF--TGFDVG---DKLSDDGTVRYRVTgkvaggdnysdyseDLRGFIMPQITYAPDDATSLTVY-----GYLSGLDQ 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 339 VMFDRGgaddFLRL------APDDRLDVRRYslsFNHQYRFNKNVRLKTIAY--------GYTTTRNwNRQDFTINNSNT 404
Cdd:PRK14050 273 VHVGNG----FLPYvgtvvdAPFGKIDRDAF---YGEPDIDNGSYAQQMLGYefshefdnGWTFSQN-ARYGHLHKHEKG 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 405 P-PSNWTGIVWGDVEiPGGAIYMRNSTGNRNR-QFEVAGIEPRLEVDYKVFDLKNELIVGTRYLYERaFEQ--------R 474
Cdd:PRK14050 345 PyTYGYVGGATGLPD-PTGPDYMLNRIGFEHRsKVDSFSIDNRLEGEFDTGALTHNLLFGLDYKYYR-LDQvqaccgatP 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 475 VDGTRA--GVKSG-NLVE-DEVRTGYALAAYIQNKVNLSPKLDLNMGLRFENFDYERDirRRSFPGLGVRDTVL-----V 545
Cdd:PRK14050 423 ISATNPvyGTTQGaNFVYlDQILTQQQIGIYAQDQIRFGDGWLVTLNGRYDYVDTDSD--ARIGTSYESNDGALsgragL 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 546 AGNVINEIIPgfgfnYRPAQTLnvfggihkgYAPprtkdAITSLGDVLDLEAEKSVNYELGLRTEPLkwLF---LEATGF 622
Cdd:PRK14050 501 AYEFDNGLTP-----YVSAATF---------FNP-----LVGTLASGPPLKPEEGEQYEAGIKYEPS--FIdglITASVF 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 623 VMNFSNQIIPVSESSGGVGFGLVNggatlNRGVETALVMDLSNLFgfsktRLIYDINATFLKATfsEDrfqNGVNINGNk 702
Cdd:PRK14050 560 QITKKNVTVTDPLTFASTQLGEVR-----SRGFELEGKVNLDDNW-----KALASFTYTDLEIT--ED---ANPSLIGN- 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 703 TPY------APDWfINSALTLETESGLGLRLVGNFVGSQFGDELNTIQpsvdgrigiIPSYKVFDAVISYQIKNWNSKFN 776
Cdd:PRK14050 624 SPYlvpetqASLW-LDYAVTDGAFEGVSLGAGVRYQGESWADEANTLK---------VPAATLFDAAIRYEKNDWGASLN 693
|
730 740 750
....*....|....*....|....*....|..
gi 1370911050 777 lsVKNLTDERYIASrrPQGIRV---GIPRLIT 805
Cdd:PRK14050 694 --VANLFDKEYVAG--CQGLLVcgyGESRTIT 721
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
135-786 |
3.70e-07 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 53.86 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 135 PGSVTYIDAKEIQTiNPLSgnEVLRRSPGVHVVDEEGLGMRVNIGIRGLDPDRSrsvLVLEDGVPVA---LSPYGEP--E 209
Cdd:PRK13484 48 PASVSVITSEQLQK-KPVS--DLVDAVKDVEGISITGGNEKPDISIRGLSGDYT---LILVDGRRQSgreSRPNGSGgfE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 210 MYYTPVMDRMAGVEILKGSGQILFGPQTIGGVINYITAnpPQDEEgsiyiqggqggFFSGLVNYGNTfgntgIQTSllRK 289
Cdd:PRK13484 122 AGFIPPVEAIERIEVIRGPMSSLYGSDAIGGVINIITK--PVNNQ-----------TWDGVLGLGGI-----IQEH--GK 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 290 KADNIGptefdiTDFntkFLFNINENSELGMKL--GIYNESSNStyIGINQVMFDRGGADDFLRLAPDDrldvrrySLSF 367
Cdd:PRK13484 182 FGNSTT------NDF---YLSGPLIKDKLGLQLygGMNYRKEDS--ISQGTPAKDNKNITATLQFTPTE-------SQKF 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 368 NHQYRFNKNVRLKTIAYGYT--TTRNWNRQDFTINNSNTPPSNWTgIVW---GDVEIPGGAIYMRNS-----TGNRNR-- 435
Cdd:PRK13484 244 VFEYGKNNQVHTLTPGESLDawTMRGNLKQPNSKRETHNSRSHWV-AAWnaqGEILHPEIAVYQEKVirevkSGKKDKyn 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 436 ----QFEvagiEPRLEVDYKVFDLK-------NELIVGTRYLYERAFEQRVDGtragvksGNLVEDEVRTGYALAAYIQN 504
Cdd:PRK13484 323 hwdlNYE----SRKPEITNTIIDAKvtaflpeNVLTIGGQFQHAELRDDSATG-------KKTTETQSVSIKQKAVFIEN 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 505 KVNLSPKLDLNMGLRFENFD-YERDIRRRSFPGLGVRDTVLVAGNV--------INEIIPGFGFNYRPAQTLnVFGGihk 575
Cdd:PRK13484 392 EYAATDSLALTGGLRLDNHEiYGSYWNPRLYAVYNLTDNLTLKGGIakafrapsIREVSPGFGTLTQGGASI-MYGN--- 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 576 gyapprtkdaitslgdvLDLEAEKSVNYELGLRTEPLKWLFLEATGFVMNFSNQII--------PVsesSGGVGFGLVNG 647
Cdd:PRK13484 468 -----------------RDLKPETSVTEEIGIIYSNDSGFSASATLFNTDFKNKLTsydigtkdPV---TGLNTFIYDNV 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 648 GATLNRGVETALVMDLSNLFGFSKtrliydiNATFLKATF-SEDRFQNGVNINGNKTPYAPDWFINSALTLETESGLGLR 726
Cdd:PRK13484 528 GEANIRGVELATQIPVYDKWHVSA-------NYTFTDSRRkSDDESLNGKSLKGEPLERTPRHAANAKLEWDYTQDITFY 600
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 727 LVGNFVGSQFGDELNTIQPSVDGRIGiipsYKVFDAVISYQIkNWNSKFNLSVKNLTDER 786
Cdd:PRK13484 601 SSLNYTGKQIWAAQRNGAKVPRVRNG----FTSMDIGLNYQI-LPDTLINFAVLNVTDRK 655
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
110-257 |
8.17e-07 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 52.58 E-value: 8.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 110 VFEETGVEMPQITIIASKDRVFSRVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVHVVDEEGlgMRVNIGIRGLDpdrSR 189
Cdd:PRK10064 23 VLAVDDDGETMVVTASAVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGD--NRKGVSIRGLD---SS 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370911050 190 SVLVLEDGVPV----ALSPYGEPEMYYTPVmDRMAGVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSI 257
Cdd:PRK10064 98 YTLILIDGKRVnsrnAVFRHNDFDLNWIPV-DAIERIEVVRGPMSSLYGSDALGGVVNIITKKIGQKWHGTV 168
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
122-257 |
7.25e-05 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 46.56 E-value: 7.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 122 TIIASKDRVFSRVPGsVTYIDAKEIQTINP---LSgnEVLRRSPGVHVVDEEGLGMRVN---IGIRGLDPDRSrsvLVLE 195
Cdd:PRK13524 40 TIVVTAAEQNLQAPG-VSTITAEDIRKRPPandVS--EIIRTMPGVNLTGNSTSGQRGNnrqIDIRGMGPENT---LILI 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370911050 196 DGVPVA------LSPYGE-----------PEMyytpvMDRmagVEILKGSGQILFGPQTIGGVINYITANPPQDEEGSI 257
Cdd:PRK13524 114 DGKPVSsrnsvrYGWRGErdtrgdtnwvpPEM-----IER---IEVLRGPAAARYGNGAAGGVVNIITKKPTGEWHGSW 184
|
|
| PRK10044 |
PRK10044 |
ferrichrome outer membrane transporter; Provisional |
645-790 |
9.19e-05 |
|
ferrichrome outer membrane transporter; Provisional
Pssm-ID: 236643 [Multi-domain] Cd Length: 727 Bit Score: 45.91 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 645 VNGGATLNRGVETAlvmdlsnlfgfSKTRLIYDINA----TFLKATFSEDRFQNGvningnKTPY------APDW----F 710
Cdd:PRK10044 573 VQGGEIRARGVELE-----------AKAALSANVNVtgsyTYTDAEYTTDTTYKG------NTPAqvpkhmASLWadytF 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 711 INSALtleteSGLGLRLVGNFVGSQFGDELNTIQpsvdgrigiIPSYKVFDAVISYQIKNWN---SKFNLSVKNLTDERY 787
Cdd:PRK10044 636 FDGPL-----SGLTLGTGGRYTGSSYGDPANSFK---------VGSYTVVDALVKYDLARFGmagSSVALNVNNLFDREY 701
|
...
gi 1370911050 788 IAS 790
Cdd:PRK10044 702 VAS 704
|
|
| PRK09840 |
PRK09840 |
catecholate siderophore receptor Fiu; Provisional |
362-810 |
1.19e-04 |
|
catecholate siderophore receptor Fiu; Provisional
Pssm-ID: 182105 [Multi-domain] Cd Length: 761 Bit Score: 45.57 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 362 RYSLSFNHQyrFNKNVRLKTiaygytTTRnWNR--QDFTI-------NNSNTP----PSNWTgivwgdveipggaiyMRN 428
Cdd:PRK09840 309 TATMRFEHD--INDNTTLRN------TTR-WSRvkQDYLLtaimggaSNITTPtpsdVNTWT---------------WSR 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 429 STGNRNRQFEVAGIEPRLEVDYKVFDLKNELIVGTRYLYERAFEQRVDGTRagVKSGNL---VEDEVRTGYA-------- 497
Cdd:PRK09840 365 TANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVT--LPAVNLyhpDSSIHPGGLTrnganang 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 498 ----LAAYIQNKVNLSPKLDLNMGLRFENFDYERD--------IRRRSFPGLGVRDTVLVA-------GNVINEiipGFG 558
Cdd:PRK09840 443 qtdtFAIYAFDTLQLTRDWELNGGIRLDNYHTEYDsatacggsGRGAITCPAGVAKGSPVTtvdtaksGNLVNW---KAG 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 559 FNYRPAQTLNVFGGIHKGYAPP------RTKDAITSLGDVLDLEAEKSVNYELGLRTEPL-KWLFLEATGFVMNFSNQIi 631
Cdd:PRK09840 520 ALYKLTENGNVYINYAVSQQPPggsnfaLAQSGSGNSANRTDFKPQKANTSEIGTKWQVLdKRLLLTAALFRTDIENEV- 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 632 pVSESSGGVGfglvNGGATLNRGVETALVMDLSNLFGfsktrliydINATFlkaTFSEDRFQNGVNIN---GNKTPYAPd 708
Cdd:PRK09840 599 -EQNDDGTYS----QYGKKRVEGYELSVAGNITPAWQ---------VIAGY---TQQKATVKNGKDVAqdgSSSLPYTP- 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 709 wfiNSALTLETESGL--GLRLVGnfvGSQFGDELntiQPSVDGRIGI---IPSYKVFDAVISYQIkNWNSKFNLSVKNLT 783
Cdd:PRK09840 661 ---EHAFTLWSQYQAtdDLSVGG---GARYIGSM---HRGSDGAVGTpafTEGYWVADAKLGYRV-NRNLDLQLNVYNLF 730
|
490 500 510
....*....|....*....|....*....|.
gi 1370911050 784 DERYIASRRPQGIRV--GIPR--LITVGYQF 810
Cdd:PRK09840 731 DTDYVASINKSGYRYhpGEPRtfLLTANMHF 761
|
|
| Peptidase_M14NE-CP-C_like |
cd11308 |
Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, ... |
37-99 |
3.94e-03 |
|
Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; This domain is found C-terminal to the M14 carboxypeptidase (CP) N/E subfamily containing zinc-binding enzymes that hydrolyze single C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes enzymatically active members (carboxypeptidase N, E, M, D, and Z), as well as non-active members (carboxypeptidase-like protein 1, -2, aortic CP-like protein, and adipocyte enhancer binding protein-1) which lack the critical active site and substrate-binding residues considered necessary for activity. The active N/E enzymes fulfill a variety of cellular functions, including prohormone processing, regulation of peptide hormone activity, alteration of protein-protein or protein-cell interactions and transcriptional regulation. For M14 CPs, it has been suggested that this domain may assist in folding of the CP domain, regulate enzyme activity, or be involved in interactions with other proteins or with membranes; for carboxypeptidase M, it may interact with the bradykinin 1 receptor at the cell surface. This domain may also be found in other peptidase families.
Pssm-ID: 200604 [Multi-domain] Cd Length: 76 Bit Score: 36.73 E-value: 3.94e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370911050 37 VSGQVKSPEGEIIPFANILVLGTVKGTYTNLDGTFQIYdLEDGEYTIKVSAVGYKSFTKTIQI 99
Cdd:cd11308 2 IKGFVTDATGNPIANATISVEGINHDVTTAKDGDYWRL-LLPGTYNVTASAPGYQPVTKTVTV 63
|
|
| PRK14049 |
PRK14049 |
ferrioxamine B receptor precursor protein; Provisional |
125-252 |
7.23e-03 |
|
ferrioxamine B receptor precursor protein; Provisional
Pssm-ID: 172541 [Multi-domain] Cd Length: 726 Bit Score: 39.88 E-value: 7.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 125 ASKDRVFSRVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVhvvdeeglgmrvNIGIRGLDPdRSRSVLVleDGVPVA--- 201
Cdd:PRK14049 70 AKVDTPFLETPQSISSVTEQQLKDRNPQTLLETLAYTPGA------------RVGAFGFDP-RFDAFFV--RGFDVTytg 134
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1370911050 202 -----LSPYGEPEMYYTPVMDRMAGVEILKGSGQILFGPQTIGGVINYITANPPQD 252
Cdd:PRK14049 135 vfrdnLRQPGASSSIFKTEPYGLEGVSILRGPSSALYGASGAGGLFNLITKRPTEE 190
|
|
| PRK10044 |
PRK10044 |
ferrichrome outer membrane transporter; Provisional |
119-252 |
8.40e-03 |
|
ferrichrome outer membrane transporter; Provisional
Pssm-ID: 236643 [Multi-domain] Cd Length: 727 Bit Score: 39.74 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370911050 119 PQITIIASK-------DRVFSRVPGSVTYIDAKEIQTINPLSGNEVLRRSPGVhVVDEEGLGMRVN-IGIRGLDPDRSRS 190
Cdd:PRK10044 57 PAATIAAKRsatgtktDTPIEKTPQSISVVTAEEMALHQPKSVKEALSYTPGV-SVGTRGASNTYDhLIIRGFAASGQSQ 135
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370911050 191 VLVLeDGVPVALSPYGEPEMyyTPVMdrMAGVEILKGSGQILFGPQTIGGVINYITANPPQD 252
Cdd:PRK10044 136 NNYL-DGLKLQGNFYNDAVI--DPYM--LERAELMRGPVSVLYGKSNPGGLLNMVSKRPTTE 192
|
|
| |
