NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1371799350|ref|WP_106732007|]
View 

SAF domain-containing protein [Streptomyces sp. MspMP-M5]

Protein Classification

SAF_CpaB_FlgA_like domain-containing protein( domain architecture ID 10554623)

SAF_CpaB_FlgA_like domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SAF pfam08666
SAF domain; This domain family includes a range of different proteins. Such as antifreeze ...
 10-70 7.74e-05

SAF domain; This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.


:

Pssm-ID: 430140 [Multi-domain]  Cd Length: 63  Bit Score: 39.08  E-value: 7.74e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371799350  10 DRVLVLARDVPVGRALQPADLRAVEVAAEAGVVSAADR-GKVVGRRVKVPLVAGALLAPGQV 70
Cdd:pfam08666   1 DNVVVAARDLPAGEVITADDLTLVRPPLALPPGLFPIAyGEVIGKVARRDIAAGEPLTASDL 62
 
Name Accession Description Interval E-value
SAF pfam08666
SAF domain; This domain family includes a range of different proteins. Such as antifreeze ...
 10-70 7.74e-05

SAF domain; This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.


Pssm-ID: 430140 [Multi-domain]  Cd Length: 63  Bit Score: 39.08  E-value: 7.74e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371799350  10 DRVLVLARDVPVGRALQPADLRAVEVAAEAGVVSAADR-GKVVGRRVKVPLVAGALLAPGQV 70
Cdd:pfam08666   1 DNVVVAARDLPAGEVITADDLTLVRPPLALPPGLFPIAyGEVIGKVARRDIAAGEPLTASDL 62
SAF smart00858
This domain family includes a range of different proteins. Such as antifreeze proteins and ...
 10-70 1.51e-04

This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins;


Pssm-ID: 214862 [Multi-domain]  Cd Length: 63  Bit Score: 38.32  E-value: 1.51e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371799350   10 DRVLVLARDVPVGRALQPADLRAVEVAAEAGVVSA-ADRGKVVGRRVKVPLVAGALLAPGQV 70
Cdd:smart00858   1 DNVVVAARDLPAGEVITAEDLRLGHVALRDLPGGGlTPYGQVIGRVARRDIAAGEPITASNL 62
SAF_CpaB_FlgA_like cd11614
SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus ...
 11-70 2.36e-04

SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; FlgA is a putative periplasmic chaperone that assists in the formation of the flagellar P ring; CpaB is a protein invoved in the assembly of the flp pili, which are bacterial virulence factors mediating non-specific adherence to surfaces; these proteins appear to contain a single SAF domain. This intermediate family also contains the SAF domains of sialic acid synthetases and type III antifreeze proteins, which also share the same extensive core structure.


Pssm-ID: 212159 [Multi-domain]  Cd Length: 61  Bit Score: 37.45  E-value: 2.36e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371799350  11 RVLVLARDVPVGRALQPADLRAVEVAAEAGVVSA-ADRGKVVGRRVKVPLVAGALLAPGQV 70
Cdd:cd11614     1 PVVVAARDLPAGTVITADDLTLVEVPLSLLPPGAlTDPDDVVGRVARRPLRAGEPITASML 61
FlgA COG1261
Flagellar basal body P-ring formation protein FlgA [Cell motility];
11-76 5.06e-03

Flagellar basal body P-ring formation protein FlgA [Cell motility];


Pssm-ID: 440873 [Multi-domain]  Cd Length: 158  Bit Score: 35.64  E-value: 5.06e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1371799350  11 RVLVLARDVPVGRALQPADLRAVEV---AAEAGVVSAADRgkVVGRRVKVPLVAGALLAPGQVGAPAIF 76
Cdd:COG1261    34 EVVVAARPLARGEVITADDLRLEEGdlaRLPGGALTDPDE--LVGKVARRSLRAGQPLRASDLRAPPLV 100
flgA_cterm TIGR03170
flagella basal body P-ring formation protein FlgA; This model describes a conserved C-terminal ...
 12-75 8.15e-03

flagella basal body P-ring formation protein FlgA; This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by pfam08666. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274466 [Multi-domain]  Cd Length: 122  Bit Score: 34.81  E-value: 8.15e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371799350  12 VLVLARDVPVGRALQPADLRAVEV-AAEAGVVSAADRGKVVGRRVKVPLVAGALLAPGQVGAPAI 75
Cdd:TIGR03170   1 VVVAKRPLKRGEVITPEDLKLERGdLARLPGGVLTDPDEVVGKVAKRPLRAGQPLTANMLRPPWL 65
 
Name Accession Description Interval E-value
SAF pfam08666
SAF domain; This domain family includes a range of different proteins. Such as antifreeze ...
 10-70 7.74e-05

SAF domain; This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.


Pssm-ID: 430140 [Multi-domain]  Cd Length: 63  Bit Score: 39.08  E-value: 7.74e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371799350  10 DRVLVLARDVPVGRALQPADLRAVEVAAEAGVVSAADR-GKVVGRRVKVPLVAGALLAPGQV 70
Cdd:pfam08666   1 DNVVVAARDLPAGEVITADDLTLVRPPLALPPGLFPIAyGEVIGKVARRDIAAGEPLTASDL 62
SAF smart00858
This domain family includes a range of different proteins. Such as antifreeze proteins and ...
 10-70 1.51e-04

This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins;


Pssm-ID: 214862 [Multi-domain]  Cd Length: 63  Bit Score: 38.32  E-value: 1.51e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1371799350   10 DRVLVLARDVPVGRALQPADLRAVEVAAEAGVVSA-ADRGKVVGRRVKVPLVAGALLAPGQV 70
Cdd:smart00858   1 DNVVVAARDLPAGEVITAEDLRLGHVALRDLPGGGlTPYGQVIGRVARRDIAAGEPITASNL 62
SAF_CpaB_FlgA_like cd11614
SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus ...
 11-70 2.36e-04

SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; FlgA is a putative periplasmic chaperone that assists in the formation of the flagellar P ring; CpaB is a protein invoved in the assembly of the flp pili, which are bacterial virulence factors mediating non-specific adherence to surfaces; these proteins appear to contain a single SAF domain. This intermediate family also contains the SAF domains of sialic acid synthetases and type III antifreeze proteins, which also share the same extensive core structure.


Pssm-ID: 212159 [Multi-domain]  Cd Length: 61  Bit Score: 37.45  E-value: 2.36e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1371799350  11 RVLVLARDVPVGRALQPADLRAVEVAAEAGVVSA-ADRGKVVGRRVKVPLVAGALLAPGQV 70
Cdd:cd11614     1 PVVVAARDLPAGTVITADDLTLVEVPLSLLPPGAlTDPDDVVGRVARRPLRAGEPITASML 61
FlgA COG1261
Flagellar basal body P-ring formation protein FlgA [Cell motility];
11-76 5.06e-03

Flagellar basal body P-ring formation protein FlgA [Cell motility];


Pssm-ID: 440873 [Multi-domain]  Cd Length: 158  Bit Score: 35.64  E-value: 5.06e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1371799350  11 RVLVLARDVPVGRALQPADLRAVEV---AAEAGVVSAADRgkVVGRRVKVPLVAGALLAPGQVGAPAIF 76
Cdd:COG1261    34 EVVVAARPLARGEVITADDLRLEEGdlaRLPGGALTDPDE--LVGKVARRSLRAGQPLRASDLRAPPLV 100
flgA_cterm TIGR03170
flagella basal body P-ring formation protein FlgA; This model describes a conserved C-terminal ...
 12-75 8.15e-03

flagella basal body P-ring formation protein FlgA; This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by pfam08666. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274466 [Multi-domain]  Cd Length: 122  Bit Score: 34.81  E-value: 8.15e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1371799350  12 VLVLARDVPVGRALQPADLRAVEV-AAEAGVVSAADRGKVVGRRVKVPLVAGALLAPGQVGAPAI 75
Cdd:TIGR03170   1 VVVAKRPLKRGEVITPEDLKLERGdLARLPGGVLTDPDEVVGKVAKRPLRAGQPLTANMLRPPWL 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH