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Conserved domains on  [gi|1374201456|ref|WP_107184682|]
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MULTISPECIES: flagellar basal body rod protein FlgC [Photobacterium]

Protein Classification

flagellar basal body rod protein FlgC( domain architecture ID 11482422)

flagellar basal body rod protein FlgC forms, together with FlgB and FlgF the proximal portion of the central rod at the core of the flagellar organelle's basal body

Gene Ontology:  GO:0071973

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 1-143 1.18e-77

flagellar basal body rod protein FlgC; Reviewed


:

Pssm-ID: 180702  Cd Length: 141  Bit Score: 226.60  E-value: 1.18e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   1 MAFTDIYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYGKTQLTGDQAnYPSAEVRIMDVVQHAG 80
Cdd:PRK06802    1 MSFNDIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATAYKARSPVFAAVYSARTLADPRG-VQGAQVQVLDVVQVGG 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1374201456  81 EAeKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLGEG 143
Cdd:PRK06802   80 SV-KRYEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGER 141
 
Name Accession Description Interval E-value
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 1-143 1.18e-77

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 226.60  E-value: 1.18e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   1 MAFTDIYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYGKTQLTGDQAnYPSAEVRIMDVVQHAG 80
Cdd:PRK06802    1 MSFNDIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATAYKARSPVFAAVYSARTLADPRG-VQGAQVQVLDVVQVGG 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1374201456  81 EAeKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLGEG 143
Cdd:PRK06802   80 SV-KRYEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGER 141
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
1-141 1.05e-55

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 170.68  E-value: 1.05e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   1 MAFTDIYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYgktqltgDQANYPSAEVRIMDVVQHAG 80
Cdd:COG1558     1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEAVL-------DRAGSGAAGVRVAGIVEDDS 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1374201456  81 EAEKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLG 141
Cdd:COG1558    74 PFRLVYDPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIG 134
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 6-141 8.10e-39

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 127.86  E-value: 8.10e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   6 IYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYGKTQLTGDQANYpsaeVRIMDVVQHAGEAEKR 85
Cdd:TIGR01395   3 IFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEAELFQDRASRPGGSG----VKVAKIVEDDSPFKLV 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1374201456  86 FEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLG 141
Cdd:TIGR01395  79 YDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIG 134
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 97-140 3.53e-07

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 44.95  E-value: 3.53e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1374201456  97 GYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRL 140
Cdd:pfam06429  31 GYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 1-143 1.18e-77

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 226.60  E-value: 1.18e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   1 MAFTDIYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYGKTQLTGDQAnYPSAEVRIMDVVQHAG 80
Cdd:PRK06802    1 MSFNDIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATAYKARSPVFAAVYSARTLADPRG-VQGAQVQVLDVVQVGG 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1374201456  81 EAeKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLGEG 143
Cdd:PRK06802   80 SV-KRYEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGER 141
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
1-141 1.05e-55

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 170.68  E-value: 1.05e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   1 MAFTDIYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYgktqltgDQANYPSAEVRIMDVVQHAG 80
Cdd:COG1558     1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEAVL-------DRAGSGAAGVRVAGIVEDDS 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1374201456  81 EAEKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLG 141
Cdd:COG1558    74 PFRLVYDPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIG 134
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-143 4.65e-48

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 151.13  E-value: 4.65e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   1 MAFTDIYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYGKTQLTGdqanypsaEVRIMDVVQHAG 80
Cdd:PRK05681    1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAAELDPGQGTG--------GVKVAKIVEDQS 72

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1374201456  81 EAEKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLGEG 143
Cdd:PRK05681   73 PFKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQS 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 6-141 8.10e-39

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 127.86  E-value: 8.10e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   6 IYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYGKTQLTGDQANYpsaeVRIMDVVQHAGEAEKR 85
Cdd:TIGR01395   3 IFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEAELFQDRASRPGGSG----VKVAKIVEDDSPFKLV 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1374201456  86 FEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLG 141
Cdd:TIGR01395  79 YDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIG 134
flgC PRK12631
flagellar basal body rod protein FlgC; Provisional
 1-142 4.70e-36

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183636  Cd Length: 138  Bit Score: 120.83  E-value: 4.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   1 MAFTDIYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYGKTQltGDQANYPSAEVRimDVVQHAG 80
Cdd:PRK12631    1 MSLFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPIFEAEMAKAQ--SQQQASQGVAVK--GIVESDK 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1374201456  81 EAEKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLGE 142
Cdd:PRK12631   77 PLLKEYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRMGK 138
flgC PRK12629
flagellar basal body rod protein FlgC; Provisional
 1-141 8.43e-34

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183634  Cd Length: 135  Bit Score: 115.18  E-value: 8.43e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   1 MAFTDIYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYGK--TQLTGdqanypsaeVRIMDVVQH 78
Cdd:PRK12629    1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQAQQSRqdPSLTS---------VNVKEITTT 71

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1374201456  79 AGEAEKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLG 141
Cdd:PRK12629   72 NAPPIRRYEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMG 134
flgC PRK12628
flagellar basal body rod protein FlgC; Provisional
 1-142 5.61e-32

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 79089  Cd Length: 140  Bit Score: 110.70  E-value: 5.61e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   1 MAFTDIYAIAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVY-GKTQLTGDQANypsAEVRIMDVVQHA 79
Cdd:PRK12628    1 MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPVFKSVQeNANQWMGEQIK---AGVKLDGIYESD 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1374201456  80 GEAEKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLGE 142
Cdd:PRK12628   78 AEPHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQLGE 140
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 9-133 1.49e-21

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 139220  Cd Length: 138  Bit Score: 84.04  E-value: 1.49e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   9 IAGSAMNAQTIRLNTVASNLANADAVAANPD-DAYQALKPVFATVYGKTQltgdqanyPSAEVRIMDVVQHAGEAEKRFE 87
Cdd:PRK12782   11 IASSGLEAQSTRLRVVSENLANAQSTGRTPGaDPYARKTVTFRAELDRAA--------GAASVRVKEIGVDTAPFRVEYD 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1374201456  88 PSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSM 133
Cdd:PRK12782   83 PGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAM 128
flgC PRK12630
flagellar basal body rod protein FlgC; Provisional
 9-141 1.32e-20

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183635  Cd Length: 143  Bit Score: 81.80  E-value: 1.32e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   9 IAGSAMNAQTIRLNTVASNLANADAVAANPDDAYQALKPVFATVYGKtQLTGDQANYPS--AEVRIMDVVQHAGEAEKRF 86
Cdd:PRK12630    9 ISASGLSAERLRMDTIASNIANATTTRTADGGPYKRKIAVFQENLNK-ELNKKNGAYEKklYGVKAVGIVEDKSPFRKVY 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1374201456  87 EPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRLG 141
Cdd:PRK12630   88 DPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAINAEKSMFSKALEIG 142
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 3-140 6.74e-16

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 69.07  E-value: 6.74e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374201456   3 FTDIYAIAGSAMNAQTIRLNTVASNLANADAvaanpdDAYQALKPVFATVYGKTQltgdqanyPSAEVRIMDVVQHAGEA 82
Cdd:PRK12632    4 FSKSLSVSASGMRAQALRLRHVSENIANADT------PGYRRKTVSFQEARDFDP--------GSGLVSTGPVRLDRSEL 69

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1374201456  83 EKRFEPSNPLANEEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRL 140
Cdd:PRK12632   70 PRIYDPSHPLADETGYYDGSNVDLVVEIADAREAQRSYEANLRMFDQARQMSSSLLDL 127
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 97-140 3.53e-07

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 44.95  E-value: 3.53e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1374201456  97 GYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLLRL 140
Cdd:pfam06429  31 GYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
Flg_bb_rod pfam00460
Flagella basal body rod protein;
9-34 6.98e-04

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 35.24  E-value: 6.98e-04
                          10        20
                  ....*....|....*....|....*.
gi 1374201456   9 IAGSAMNAQTIRLNTVASNLANADAV 34
Cdd:pfam00460   3 TAVSALNAQQIRLDVIANNIANANTP 28
flgE PRK06803
flagellar basal body protein FlaE;
95-138 8.31e-04

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 38.21  E-value: 8.31e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1374201456  95 EEGYVYYPDIDVVAEMADMMSATRSFETNVEVLSNVKSMQQGLL 138
Cdd:PRK06803  356 TSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALF 399
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 9-63 2.72e-03

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 36.46  E-value: 2.72e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1374201456   9 IAGSAMNAQTIRLNTVASNLANADAVaanpddAYQALKPVFATVYGKTQLTGDQA 63
Cdd:TIGR03506   5 TALSGLNAQSSALDVIANNIANANTT------GFKRSRAEFQDLLSQSVSGSGQV 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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