NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1374260446|ref|WP_107233476|]
View 

DUF1289 domain-containing protein [Photobacterium leiognathi]

Protein Classification

DUF1289 domain-containing protein( domain architecture ID 10536542)

DUF1289 domain-containing protein similar to Escherichia coli YdhL

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 3-46 8.73e-10

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


:

Pssm-ID: 462046  Cd Length: 47  Bit Score: 49.87  E-value: 8.73e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1374260446   3 TPCVAKCK-NNDGICSGCLRTMKEVVEWQTFDDQTREAIMQEIKG 46
Cdd:pfam06945   1 SPCIGVCSlDEDGLCRGCGRTLDEIAGWSRMSDEERRAVLARLPQ 45
 
Name Accession Description Interval E-value
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 3-46 8.73e-10

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 462046  Cd Length: 47  Bit Score: 49.87  E-value: 8.73e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1374260446   3 TPCVAKCK-NNDGICSGCLRTMKEVVEWQTFDDQTREAIMQEIKG 46
Cdd:pfam06945   1 SPCIGVCSlDEDGLCRGCGRTLDEIAGWSRMSDEERRAVLARLPQ 45
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
1-45 1.86e-09

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


Pssm-ID: 442542  Cd Length: 59  Bit Score: 49.16  E-value: 1.86e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1374260446   1 MKTPCVAKCK--NNDGICSGCLRTMKEVVEWQTFDDQTREAIMQEIK 45
Cdd:COG3313     7 VPSPCIGVCSldPEDGVCRGCGRTLDEIARWSKMSDEERRAVLRRLP 53
 
Name Accession Description Interval E-value
DUF1289 pfam06945
Protein of unknown function (DUF1289); This family consists of a number of hypothetical ...
 3-46 8.73e-10

Protein of unknown function (DUF1289); This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 462046  Cd Length: 47  Bit Score: 49.87  E-value: 8.73e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1374260446   3 TPCVAKCK-NNDGICSGCLRTMKEVVEWQTFDDQTREAIMQEIKG 46
Cdd:pfam06945   1 SPCIGVCSlDEDGLCRGCGRTLDEIAGWSRMSDEERRAVLARLPQ 45
YdhL COG3313
Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];
1-45 1.86e-09

Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only];


Pssm-ID: 442542  Cd Length: 59  Bit Score: 49.16  E-value: 1.86e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1374260446   1 MKTPCVAKCK--NNDGICSGCLRTMKEVVEWQTFDDQTREAIMQEIK 45
Cdd:COG3313     7 VPSPCIGVCSldPEDGVCRGCGRTLDEIARWSKMSDEERRAVLRRLP 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH