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Conserved domains on  [gi|1374261329|ref|WP_107234359|]
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molybdate ABC transporter permease subunit [Photobacterium leiognathi]

Protein Classification

molybdate ABC transporter permease( domain architecture ID 10793250)

molybdate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter for molybdenum, and is responsible for the translocation of the substrate across the membrane

Gene Symbol:  modB
Gene Ontology:  GO:0055052|GO:0015689|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  11421278|25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-226 1.55e-149

molybdate ABC transporter permease subunit;


:

Pssm-ID: 181841  Cd Length: 229  Bit Score: 415.09  E-value: 1.55e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   1 MLTDYELQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLY 80
Cdd:PRK09421    2 ILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLY 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  81 DWFGFSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARAL 160
Cdd:PRK09421   82 EWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSL 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1374261329 161 GEFGATITFVSNIPGQTQTIPLAMYSFIETPGAESEAARLCVVAIVIALSSLFASEWLTRIARKRL 226
Cdd:PRK09421  162 GEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRL 227
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-226 1.55e-149

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 415.09  E-value: 1.55e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   1 MLTDYELQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLY 80
Cdd:PRK09421    2 ILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLY 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  81 DWFGFSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARAL 160
Cdd:PRK09421   82 EWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSL 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1374261329 161 GEFGATITFVSNIPGQTQTIPLAMYSFIETPGAESEAARLCVVAIVIALSSLFASEWLTRIARKRL 226
Cdd:PRK09421  162 GEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRL 227
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 2-225 7.72e-107

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 306.98  E-value: 7.72e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   2 LTDYELQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYD 81
Cdd:COG4149     1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  82 WFGFSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALG 161
Cdd:COG4149    81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1374261329 162 EFGATITFVSNIPGQTQTIPLAMYSFIETpGAESEAARLCVVAIVIALSSLFASEWLTRIARKR 225
Cdd:COG4149   161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 11-220 2.27e-81

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 241.76  E-value: 2.27e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  11 LLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLyDWFGFSFSFS 90
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLL-ELFGISLVFT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  91 WRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGATITFV 170
Cdd:TIGR02141  80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1374261329 171 SNIPGQTQTIPLAMYSFIEtpGAESEAARLCVVAIVIALSSLFASEWLTR 220
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNK 207
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 10-212 5.31e-22

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 89.26  E-value: 5.31e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  10 LLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYDWFGfsfsf 89
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLP----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  90 swrgAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGATITF 169
Cdd:cd06261    76 ----ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1374261329 170 VSNIPGQTQTIPLAMYSFIETPgaesEAARLCVVAIVIALSSL 212
Cdd:cd06261   152 GGGEAPGPGTGLLLIFAILFPG----DLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 13-179 4.32e-16

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 73.35  E-value: 4.32e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  13 SLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWlydwfgfSFSFSWR 92
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-------GLLYTPT 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  93 GAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIpGILTGTILAFARALGEFGATITFVSN 172
Cdd:NF038017   74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMVGGN 152


                  ....*..
gi 1374261329 173 IPGQTQT 179
Cdd:NF038017  153 IRGYTRV 159
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 24-214 3.09e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.31  E-value: 3.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  24 SLPFGIACAwllARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLismgrqgaigkwlYDWFGFSFSFSWRGAALAVAVVSF 103
Cdd:pfam00528   1 GIPLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILLV-------------VIAILSILGHGILPAIILALLGWA 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329 104 PLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFgATITFVSNIPGQTQTIPLA 183
Cdd:pfam00528  65 GYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGA-VLLEFLGSWPGLGLLLIEA 143

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1374261329 184 MYSFIETPGAESEAARLCVVAIVIALSSLFA 214
Cdd:pfam00528 144 ILGYDYPEIQGPVLAAALILLLLNLLVDILQ 174
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-226 1.55e-149

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 415.09  E-value: 1.55e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   1 MLTDYELQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLY 80
Cdd:PRK09421    2 ILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLY 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  81 DWFGFSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARAL 160
Cdd:PRK09421   82 EWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSL 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1374261329 161 GEFGATITFVSNIPGQTQTIPLAMYSFIETPGAESEAARLCVVAIVIALSSLFASEWLTRIARKRL 226
Cdd:PRK09421  162 GEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRL 227
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 2-225 7.72e-107

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 306.98  E-value: 7.72e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   2 LTDYELQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYD 81
Cdd:COG4149     1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  82 WFGFSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALG 161
Cdd:COG4149    81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1374261329 162 EFGATITFVSNIPGQTQTIPLAMYSFIETpGAESEAARLCVVAIVIALSSLFASEWLTRIARKR 225
Cdd:COG4149   161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 11-220 2.27e-81

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 241.76  E-value: 2.27e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  11 LLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLyDWFGFSFSFS 90
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLL-ELFGISLVFT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  91 WRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGATITFV 170
Cdd:TIGR02141  80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1374261329 171 SNIPGQTQTIPLAMYSFIEtpGAESEAARLCVVAIVIALSSLFASEWLTR 220
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNK 207
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 7-224 7.42e-66

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 204.60  E-value: 7.42e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYDwFGFS 86
Cdd:COG0555    53 LAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAP-LGIK 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGAT 166
Cdd:COG0555   132 VAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAV 211

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1374261329 167 ITFVSNIPGQTQTIPLAMYSFIETpGAESEAARLCVVAIVIALSSLFASEWLTRIARK 224
Cdd:COG0555   212 IFIAGNLPMKTEILPLLIYLKLEE-GDYAGATAIALVLLLISFLLLLLINLLQRRSRR 268
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 2-194 5.86e-47

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 154.86  E-value: 5.86e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   2 LTDYELQ-ALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLy 80
Cdd:TIGR01581  14 LTDPENIkALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYL- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  81 DWFGFSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARAL 160
Cdd:TIGR01581  93 EAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARAL 172

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1374261329 161 GEFGATITFVSNIPGQTQTIPLAMYSFIETPGAE 194
Cdd:TIGR01581 173 GEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIE 206
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 7-210 1.35e-45

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 152.89  E-value: 1.35e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYDwFGFS 86
Cdd:TIGR00969  59 VSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLAS-FGIQ 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGAT 166
Cdd:TIGR00969 138 IIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAV 217

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1374261329 167 ITFVSNIPGQTQTIPLAMYSFIE---TPGAESEAARLCVVAIVIALS 210
Cdd:TIGR00969 218 VVVSGNIPGKTLTLPLLIEERLEqydYPGAYVIAAVLLLVSLVTLFL 264
cysT CHL00187
sulfate transport protein; Provisional
 7-190 6.95e-45

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 149.78  E-value: 6.95e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLyDWFGFS 86
Cdd:CHL00187   54 LSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLL-SHLGIQ 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGAT 166
Cdd:CHL00187  133 IVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSI 212

                         170       180
                  ....*....|....*....|....
gi 1374261329 167 ITFVSNIPGQTQTIPLAMYSFIET 190
Cdd:CHL00187  213 VIISSNIPFKDLVASVLIFQSLEQ 236
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 7-225 1.77e-39

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 136.78  E-value: 1.77e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGaigkwlydwfgfs 86
Cdd:COG1177    60 LDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALG------------- 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGAT 166
Cdd:COG1177   127 LSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVIT 206

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1374261329 167 ItFVSniPGQTQTIPLAMYSFIETpGAESEAARLCVVAIVIALSSLFASEWLTRIARKR 225
Cdd:COG1177   207 L-FLA--GPGVTTLPVYIYSMIRR-GISPEINALSTLLILLSLLLLLLAERLRRRGERR 261
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
7-223 2.97e-39

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 141.84  E-value: 2.97e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYDWFGFS 86
Cdd:COG1178    53 WRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLE 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FS--FSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFG 164
Cdd:COG1178   133 PPdiYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFG 212

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1374261329 165 AtitfVSNIPGQTQTIPLAMYSFIETPGAESEAARLCVVAIVIALSSLFASEWLTRIAR 223
Cdd:COG1178   213 T----PLVLGGGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRR 267
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 7-225 1.37e-38

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 134.37  E-value: 1.37e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYdWFGFS 86
Cdd:TIGR02139  49 LAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLA-PLGIK 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGAT 166
Cdd:TIGR02139 128 IAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSV 207

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1374261329 167 ITFVSNIPGQTQTIPLAMYSFIETPGAESeAARLCVVAIVIALSSLFASEWLTRIARKR 225
Cdd:TIGR02139 208 IFIAGNLPMKTEIAPLLIFQKLEQYDYAG-ATAIASVMLIISFVILLFINLLQWWALRY 265
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
7-185 8.08e-33

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 119.86  E-value: 8.08e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYDwFGFS 86
Cdd:PRK10971   57 VAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAK-FDIK 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGAT 166
Cdd:PRK10971  136 VTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAV 215

                         170
                  ....*....|....*....
gi 1374261329 167 ITFVSNIPGQTQTIPLAMY 185
Cdd:PRK10971  216 IFIAGNIAWKTEVTSLMIF 234
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
7-220 6.22e-32

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 121.81  E-value: 6.22e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRqgaigkwlydWFGFS 86
Cdd:COG1178   337 LRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNR----------PLPLL 406

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGAT 166
Cdd:COG1178   407 LYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSAT 486

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1374261329 167 ITFVsniPGQTQTIPLAMYSFIETpGAESEAARLCVVAIVIALSSLFASEWLTR 220
Cdd:COG1178   487 LLLR---PPGFETLAVLIYQLASS-GRYGEAAALALLLVLVSLLPVLLLERLLG 536
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 7-225 2.61e-30

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 113.32  E-value: 2.61e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYdWFG-- 84
Cdd:COG1176    66 LKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLL-ALGli 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  85 ---FSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALG 161
Cdd:COG1176   145 depLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALG 224

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1374261329 162 EFgATITFVSniPGQTQTIPLAMYSFIETPGAESEAARLCVVAIVIALSSLFASEWLTRIARKR 225
Cdd:COG1176   225 AF-VTPALLG--GGKVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
7-206 4.51e-27

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 104.83  E-value: 4.51e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLyDWFGFS 86
Cdd:PRK11602   63 LHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL-DEHNLQ 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGAT 166
Cdd:PRK11602  142 LMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAV 221

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1374261329 167 ITFVSNIPGQTQTIPLA---MYSFIETPGAESEAARLCVVAIV 206
Cdd:PRK11602  222 SVVSGSIRGETLSLPLQielLEQDYNTVGSFTAAALLTLMAII 264
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 10-212 5.31e-22

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 89.26  E-value: 5.31e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  10 LLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYDWFGfsfsf 89
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLP----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  90 swrgAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGATITF 169
Cdd:cd06261    76 ----ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1374261329 170 VSNIPGQTQTIPLAMYSFIETPgaesEAARLCVVAIVIALSSL 212
Cdd:cd06261   152 GGGEAPGPGTGLLLIFAILFPG----DLGVAAAVALILLLLSL 190
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 9-226 1.94e-19

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 83.93  E-value: 1.94e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   9 ALLLSLKISSVAVLCSLPFGIACAWLL---ARRNFWGKsLLDGMIHLPLVLPPVVIG---YLLLISMgrqgaigkwlydw 82
Cdd:COG0581    42 AIVGTLLLVLLATLIAVPLGVLAAIYLaeyARGGRLAR-LIRFAIDVLAGVPSIVYGlfgYALFVLT------------- 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  83 FGFSFSFSWrgAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGE 162
Cdd:COG0581   108 LGLGFSLLA--GALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGE 185

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1374261329 163 -------FGATITFVSNIPGQTQTIPLAMYSFIETPGAESE----AARLCVVAIVIALSSLfaSEWLTRIARKRL 226
Cdd:COG0581   186 tapllftAGVSPFLPLSLFDPFATLPVHIYNLASSPYPAAQelawAAALVLLLLVLLLNLL--ARLLRRRFRKKL 258
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 13-179 4.32e-16

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 73.35  E-value: 4.32e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  13 SLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWlydwfgfSFSFSWR 92
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-------GLLYTPT 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  93 GAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIpGILTGTILAFARALGEFGATITFVSN 172
Cdd:NF038017   74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMVGGN 152


                  ....*..
gi 1374261329 173 IPGQTQT 179
Cdd:NF038017  153 IRGYTRV 159
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 7-188 1.23e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 70.89  E-value: 1.23e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIG---YLLLISMGrqgaigkwLYDwf 83
Cdd:COG0395    73 GRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLiplYLLFRQLG--------LLN-- 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  84 gfsfsfSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEF 163
Cdd:COG0395   143 ------TYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDF 216

                         170       180
                  ....*....|....*....|....*
gi 1374261329 164 GATITFVSNipGQTQTIPLAMYSFI 188
Cdd:COG0395   217 LWPLILLTS--PDLRTLPVGLASFQ 239
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 7-224 1.76e-14

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 70.40  E-value: 1.76e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLIsmgrqgaigkwLYDWFGFS 86
Cdd:PRK09500   56 LQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLV-----------LFMLLGIQ 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 FSFsWrgaALAVAVVSF--PLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEfg 164
Cdd:PRK09500  125 LGF-W---SLLFAHITFclPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDD-- 198

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329 165 ATITFVSNIPGqTQTIPLAMYSFIETpGAESEAARLCVVAIVIALSSLFASEWLTRIARK 224
Cdd:PRK09500  199 VVVSSFVTGPS-YEILPLKIYSMVKV-GVSPEVNALATILLVLSLVLVILSQLLARDKTK 256
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 7-214 1.21e-13

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 68.49  E-value: 1.21e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYDWFG-- 84
Cdd:PRK15050   72 RGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGle 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  85 ---FSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALG 161
Cdd:PRK15050  152 appLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLN 231

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1374261329 162 EFGatITFVSNIPGqTQTIPLAMYSF----IETPGAeseaarlCVVAIV-IALS-SLFA 214
Cdd:PRK15050  232 EFG--IVLFTGAKD-VVTLPVLIYSKaivdFDYPTA-------CAIAVVnLALSlGLYA 280
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 9-228 2.06e-13

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 67.65  E-value: 2.06e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   9 ALLLSLKISSVAVLCSLPFGIACAWLL---ARRNFWGKSLLDGMIHLpLVLPPVVIG---YLLLISMGrqgaigkwlydw 82
Cdd:TIGR00974  55 AIVGTLLLTLLAIVIAVPLGIGAAIYLaeyANGSRFTKIIRFAVDIL-AGVPSIVVGlfgYGFFVLTY------------ 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  83 fgFSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGE 162
Cdd:TIGR00974 122 --LGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGE 199

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1374261329 163 FGATI-------TFVSNIPGQTQTIPLAMYSFIeTPGAESEAARLCVVAIVIALSSLFASEWLTRIARKRLEV 228
Cdd:TIGR00974 200 TAPLLftaggsaFTPPNLFDPFATLPVLIYNLA-SEGPYVEAQQLAWAAALVLIVLVLLLNLIARLLRRRFKK 271
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 7-165 3.28e-13

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 68.17  E-value: 3.28e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAigkwLYDWFGFS 86
Cdd:TIGR03262  53 LQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGL----LKGLLGGF 128

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1374261329  87 FSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGA 165
Cdd:TIGR03262 129 SIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGV 207
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 13-162 1.71e-12

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 65.11  E-value: 1.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  13 SLKISSVAVLCSLPFGIACAWLLARR-NFWGKSLLDGMIHLPLVLPPVVIGYLLLISmgrqgaIGKWLYDWFGFS-FSFS 90
Cdd:COG0573    82 TLLVSLIALLIAVPLGLGIAIFLSEYaPPRLRRILKPAIELLAGIPSVVYGFWGLFV------LVPLLRDLFPWPpSGFS 155

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1374261329  91 WRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGE 162
Cdd:COG0573   156 LLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGE 227
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-185 1.84e-12

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 65.16  E-value: 1.84e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   1 MLTDYE-LQALLLSLKISSVAVLCSLPFGIACAWLLaRRNFWGKSLLDGMIHLPLVLPPVVIGYL-LLISMGRQGAIGKW 78
Cdd:COG1175    68 LFTDPRfWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIwKWLFNPDYGLLNAL 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  79 LyDWFGFSfSFSWRG------AALAVAVV--SFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILT 150
Cdd:COG1175   147 L-GALGLE-PINWLGdpslalPAVIIVTVwkGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILF 224

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1374261329 151 GTILAFARALGEFGATITFVSNIPG-QTQTIPLAMY 185
Cdd:COG1175   225 VLVLSTIGALQVFDLVYVLTGGGPGnSTTTLVLYIY 260
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 7-212 2.11e-11

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 61.90  E-value: 2.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARR-NFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGR--QGAIGKWLYDWF 83
Cdd:TIGR02138  62 LPLIVGTLITSLIALLIAVPVGIGIAIFLSEIaPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPflKPHFQPFLGSNL 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  84 GF--SFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALG 161
Cdd:TIGR02138 142 GLipLFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALG 221

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1374261329 162 EFGATITFVSNI----------PGQTQTIPLAMySFIETPGAESEAARLCVVAIVIALSSL 212
Cdd:TIGR02138 222 ETMAVTMVIGNVfpisplslfdPGTTITSLIAN-QFGEASGGSVHTSALFALGLVLFVITL 281
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 1-226 3.69e-11

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 61.36  E-value: 3.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   1 MLTDYELQALLLSLKISSVAVLCSLPFGIACAWLLARrnfwgksLLDGMIHLPLV--------LPPVVIGYLLLISMGRQ 72
Cdd:COG4132    56 LTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRR-------GGPGWLRRAVLafsgvasnFAGVPLAFAFIATLGRN 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  73 GAIGKWLYDW-----FGFSFsFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPG 147
Cdd:COG4132   129 GLVTLLLKQLgidlyDGFNL-YSFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPS 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329 148 ILTGTILAFARALGEFGATITFVSnipGQTQTIPLAMYSFI--ETPGAESEAARLCVVAIVIALSSLFASEWLTRIARKR 225
Cdd:COG4132   208 LLGTFLLLFANAFGAYATAYALTG---GNYNLVPIRIGALIsgDVLLDPNLGAALALGMIVIMALVMALYQWLQRRSRRW 284


                  .
gi 1374261329 226 L 226
Cdd:COG4132   285 L 285
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 7-226 5.84e-11

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 60.64  E-value: 5.84e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLAR-RNFWGKSLLDGMIHLPLVLPPVVIGY-LLLISMGRQGAIGkWLYDWFG 84
Cdd:PRK10592   62 MSAVGLSLTIAACAATAAAILGTIAAVVMVRfGRFRGSNGFAFMITAPLVMPDVITGLsLLLLFVALAHAIG-WPADRGM 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  85 FSFSFSWRGAALA-VAVVsfplmvrsIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEF 163
Cdd:PRK10592  141 LTIWLAHVTFCTAyVAVV--------ISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDL 212

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1374261329 164 gATITFVSNiPGQTqTIPLAMYSFIETPGAESEAARLCVVAIVIALSSLFASEWLTRIARKRL 226
Cdd:PRK10592  213 -VIASFVSG-PGAT-TLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARAEKQRI 272
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 24-214 3.09e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.31  E-value: 3.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  24 SLPFGIACAwllARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLismgrqgaigkwlYDWFGFSFSFSWRGAALAVAVVSF 103
Cdd:pfam00528   1 GIPLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILLV-------------VIAILSILGHGILPAIILALLGWA 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329 104 PLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFgATITFVSNIPGQTQTIPLA 183
Cdd:pfam00528  65 GYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGA-VLLEFLGSWPGLGLLLIEA 143

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1374261329 184 MYSFIETPGAESEAARLCVVAIVIALSSLFA 214
Cdd:pfam00528 144 ILGYDYPEIQGPVLAAALILLLLNLLVDILQ 174
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 8-163 3.80e-10

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 58.55  E-value: 3.80e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   8 QALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYdWFG--- 84
Cdd:PRK09497   63 EVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLL-WLGvid 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  85 --FSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGE 162
Cdd:PRK09497  142 tpIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGM 221


                  .
gi 1374261329 163 F 163
Cdd:PRK09497  222 F 222
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 7-160 6.77e-10

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 57.47  E-value: 6.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARrNFWGKSLLDGMIHLPLVLPPVVIGYLLLIsmgrqgaigkwlydWFGFS 86
Cdd:COG0600    60 WEHLLASLLRVLLGFALAALLGVPLGLLLGL-SRLLRRLLDPLLVFLRPIPPLALAPLLIL--------------WFGIG 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1374261329  87 FSfswrGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARAL 160
Cdd:COG0600   125 EA----SKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 7-163 1.37e-09

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 57.03  E-value: 1.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLYdWFGF- 85
Cdd:PRK10683   96 FDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLL-WLGVi 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  86 --SFSFSWRGAALAVAVVS--FPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALG 161
Cdd:PRK10683  175 dqPLTILHTNLAVYIGIVYayLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVG 254


                  ..
gi 1374261329 162 EF 163
Cdd:PRK10683  255 EF 256
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 13-188 6.61e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 51.69  E-value: 6.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  13 SLKISSVAVLCSLPFGIACAWLLARRNFWGKS------LLDGMIhlPLVLPPVVIgYLLLISMGrqgaigkwLYDwfgfs 86
Cdd:COG3833    78 SLIVAVVTAIISVFLAALAAYAFSRFRFKGRKagllalLLLQMF--PAFLALVAL-YLLLSALG--------LLN----- 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  87 fsfSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGEFGAT 166
Cdd:COG3833   142 ---TLLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILA 218

                         170       180
                  ....*....|....*....|..
gi 1374261329 167 ITFVSNipGQTQTIPLAMYSFI 188
Cdd:COG3833   219 SVLLRS--PENYTLAVGLYSFV 238
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 7-157 1.32e-06

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 48.33  E-value: 1.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGKWLydwfgfs 86
Cdd:COG4135   355 LEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWL------- 427

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1374261329  87 fsfswrGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFA 157
Cdd:COG4135   428 ------AVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFA 492
pstA PRK11268
phosphate ABC transporter permease PstA;
88-162 2.42e-06

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 47.37  E-value: 2.42e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1374261329  88 SFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGE 162
Cdd:PRK11268  150 HFSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGE 224
malG PRK10998
maltose ABC transporter permease MalG;
7-163 3.52e-06

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 46.63  E-value: 3.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKS-LLDGMIHL---PLVLPPVVIgYLLLISMGRQgaigkwlYDW 82
Cdd:PRK10998   82 LLWLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKAtLLKGMLIFqmfPAVLSLVAL-YALFDRLGQY-------IPF 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  83 FGFSFsfswRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARALGE 162
Cdd:PRK10998  154 IGLNT----HGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITE 229


                  .
gi 1374261329 163 F 163
Cdd:PRK10998  230 V 230
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 4-209 1.11e-05

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 45.68  E-value: 1.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   4 DYELQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRQGAIGkWLYDWF 83
Cdd:TIGR01253  43 DYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLA-TLANLF 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  84 GFSFSFS---WRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARAL 160
Cdd:TIGR01253 122 GLEWQFHiygLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCF 201

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1374261329 161 GEFGATITFVSNipGQTQTIPLAMYSFIETPGAESEAARLCVVAIVIAL 209
Cdd:TIGR01253 202 ASFATVLSLGGG--PQATTIELAIYQAILFDFDLAKAALFALLQFVCCL 248
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 7-151 1.34e-05

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 44.66  E-value: 1.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   7 LQALLLSLKISSVAVLCSLPFGIACAWLLARRNfWGKSLLDGMIHLPLVLPPVVIGYLLLISMGrqgaigkwlydwfgfs 86
Cdd:COG1174    17 LALLLEHLLLVLLALLIALLIAVPLGILITRRR-RLAGLVLGVANILQTIPSLALLALLIPLLG---------------- 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1374261329  87 fsFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTG 151
Cdd:COG1174    80 --IGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAG 142
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 4-148 1.83e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 44.83  E-value: 1.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   4 DYELQALLLSLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLpPVVIGYLLLISM-GRQGAIGKWLyDW 82
Cdd:PRK09433   40 SYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVL-PVLVAVFGLLSVyGRSGWLAQLL-QA 117

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1374261329  83 FGFSFSFSWRG-AALAVAVVSF--PLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPL---TIPGI 148
Cdd:PRK09433  118 LGLEWPFSIYGlQGILLAHVFFnlPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYlrrQLPPV 189
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 8-188 7.98e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 42.90  E-value: 7.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329   8 QALLLSLKISSVAVLCSLPFGIACAW----LLARRNFWGKSLLDGMIHLPLVLPPVVIG---YLLLISmgrqgaigkwly 80
Cdd:PRK09433  319 QALWTSLRIALAAALLAVVLTMMLLWssreLRLRQRKLAAQALELSGMLILAMPGIVLAtglFLLLRN------------ 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  81 dwFGFSFSFSWRGAALAVAVVSFPLMVRSIRLALEGVDKKLEQAARTLGASPLRVFMTITLPLTIPGILTGTILAFARAL 160
Cdd:PRK09433  387 --TTDLPASALGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSL 464

                         170       180
                  ....*....|....*....|....*...
gi 1374261329 161 GEFGATITFVSNipgQTQTIPLAMYSFI 188
Cdd:PRK09433  465 GDFGVIALFGSQ---DFRTLPFLLYQQL 489
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 13-160 6.03e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 37.01  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1374261329  13 SLKISSVAVLCSLPFGIACAWLLARRNFWGKSLLDGMIHLPLVLPPVVIGYLLLISMGRqgaigkwlydwfgfsfsfSWR 92
Cdd:COG1173    81 SLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGP------------------GLL 142

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1374261329  93 GAALAVAVVSFPLMVRSIR---LALegvdKKLE--QAARTLGASPLRVFMTITLPLTIPGILTGTILAFARAL 160
Cdd:COG1173   143 NVILALGLTGWPGYARLVRaqvLSL----REREyvEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAI 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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