NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1376235113|ref|WP_107328698|]
View 

PTS IIA-like nitrogen regulatory protein PtsN [Metapseudomonas otitidis]

Protein Classification

PTS IIA-like nitrogen regulatory protein PtsN( domain architecture ID 10796907)

PTS IIA-like nitrogen regulatory protein PtsN may play a role in regulating nitrogen assimilation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 3-149 3.68e-64

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


:

Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 193.01  E-value: 3.68e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   3 RLEQILTPGRSLVNVPGGSKKRVLEQIANLVARDLVdLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVL 82
Cdd:TIGR01419   1 SLIGLLLPEAIRVAMECGSKKRLLEIISLLAARELS-LPEQDVFECLLAREKLGSTGVGNGIAIPHGRLSGLKQPVGVFI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1376235113  83 RLDAAVDFDAIDGAPVDLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSEnLYQVVVD 149
Cdd:TIGR01419  80 RLDAPVDFDALDGKPVDLLFALLVPENATAEHLEALSRIARKLSDKTICRRLRAASAEE-IYQILTD 145
 
Name Accession Description Interval E-value
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 3-149 3.68e-64

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 193.01  E-value: 3.68e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   3 RLEQILTPGRSLVNVPGGSKKRVLEQIANLVARDLVdLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVL 82
Cdd:TIGR01419   1 SLIGLLLPEAIRVAMECGSKKRLLEIISLLAARELS-LPEQDVFECLLAREKLGSTGVGNGIAIPHGRLSGLKQPVGVFI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1376235113  83 RLDAAVDFDAIDGAPVDLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSEnLYQVVVD 149
Cdd:TIGR01419  80 RLDAPVDFDALDGKPVDLLFALLVPENATAEHLEALSRIARKLSDKTICRRLRAASAEE-IYQILTD 145
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 2-147 8.86e-52

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 161.56  E-value: 8.86e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   2 IRLEQILTPGRSLVNVPGGSKKRVLEQIANLVARDLVDLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAV 81
Cdd:COG1762     1 MMLSDLLTPELILLDLEASSKEEAIEELAELLAEKGYVLDKEEYLEALLEREELGSTGIGPGIAIPHARPEGVKKPGIAV 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1376235113  82 LRLDAAVDFDAIDGAPVDLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSENLYQVV 147
Cdd:COG1762    81 ARLKEPVDFGAMDGEPVDLVFLLAAPEDDSEEHLKLLAELARLLSDEEFREKLLNAKSPEEILELL 146
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 8-147 1.90e-38

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 127.29  E-value: 1.90e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   8 LTPGRSLVNVPGGSKKRVLEQIANLVARDlvDLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVLRLDAA 87
Cdd:cd00211     1 LTKENIRLNLKAKSKEEAIEELAQLLVAA--GYVEEEYIEALLEREKEGSTGIGNGIAIPHAKSEAVKKPGIAVLRLKEP 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113  88 VDFDAIDGAPVDLLFVLLVPEaaTDEHLELLRQIASMLDRSDVRDRLRHAQDSENLYQVV 147
Cdd:cd00211    79 VDFGSLDGQPVHLIFLLAAPD--SNEHLKALSQLARLLSDEEFVEQLLNAQSKEEILALL 136
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
2-149 4.83e-36

PTS IIA-like nitrogen regulatory protein PtsN;


Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 121.78  E-value: 4.83e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   2 IRLEQILTPGRSLVNVPGGSKKRVLEQIANLVARDLvDLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAV 81
Cdd:PRK10896    7 LQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQL-SLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGV 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1376235113  82 -LRLDAAVDFDAIDGAPVDLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSENLYQVVVD 149
Cdd:PRK10896   86 fVQLEQPIAFDAIDNQPVDLLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITE 154
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
7-147 5.70e-36

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 121.16  E-value: 5.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   7 ILTPGRSLVNVPGGSKKRVLEQIAN-LVARDLVDldsQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVLRLD 85
Cdd:pfam00359   1 LLDKELIFLNLEAKSKEEAIEFLADkLVEAGYVE---PAYLEAILEREKEGSTGIGNGIAIPHARSEAVKKPGIAVLTLK 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1376235113  86 AAVDFDAIDGAPVDLLFVLLVPEAATdEHLELLRQIASMLDRSDVRDRLRHAQDSENLYQVV 147
Cdd:pfam00359  78 EPVDFGSEDGKPVKLIFLLAAPDNEA-SHLKILSQLARLLQDEEFVEKLLKAKDPEEILEIL 138
 
Name Accession Description Interval E-value
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 3-149 3.68e-64

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 193.01  E-value: 3.68e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   3 RLEQILTPGRSLVNVPGGSKKRVLEQIANLVARDLVdLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVL 82
Cdd:TIGR01419   1 SLIGLLLPEAIRVAMECGSKKRLLEIISLLAARELS-LPEQDVFECLLAREKLGSTGVGNGIAIPHGRLSGLKQPVGVFI 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1376235113  83 RLDAAVDFDAIDGAPVDLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSEnLYQVVVD 149
Cdd:TIGR01419  80 RLDAPVDFDALDGKPVDLLFALLVPENATAEHLEALSRIARKLSDKTICRRLRAASAEE-IYQILTD 145
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 2-147 8.86e-52

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 161.56  E-value: 8.86e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   2 IRLEQILTPGRSLVNVPGGSKKRVLEQIANLVARDLVDLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAV 81
Cdd:COG1762     1 MMLSDLLTPELILLDLEASSKEEAIEELAELLAEKGYVLDKEEYLEALLEREELGSTGIGPGIAIPHARPEGVKKPGIAV 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1376235113  82 LRLDAAVDFDAIDGAPVDLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSENLYQVV 147
Cdd:COG1762    81 ARLKEPVDFGAMDGEPVDLVFLLAAPEDDSEEHLKLLAELARLLSDEEFREKLLNAKSPEEILELL 146
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 8-147 1.90e-38

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 127.29  E-value: 1.90e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   8 LTPGRSLVNVPGGSKKRVLEQIANLVARDlvDLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVLRLDAA 87
Cdd:cd00211     1 LTKENIRLNLKAKSKEEAIEELAQLLVAA--GYVEEEYIEALLEREKEGSTGIGNGIAIPHAKSEAVKKPGIAVLRLKEP 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113  88 VDFDAIDGAPVDLLFVLLVPEaaTDEHLELLRQIASMLDRSDVRDRLRHAQDSENLYQVV 147
Cdd:cd00211    79 VDFGSLDGQPVHLIFLLAAPD--SNEHLKALSQLARLLSDEEFVEQLLNAQSKEEILALL 136
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
2-149 4.83e-36

PTS IIA-like nitrogen regulatory protein PtsN;


Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 121.78  E-value: 4.83e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   2 IRLEQILTPGRSLVNVPGGSKKRVLEQIANLVARDLvDLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAV 81
Cdd:PRK10896    7 LQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQL-SLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGV 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1376235113  82 -LRLDAAVDFDAIDGAPVDLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSENLYQVVVD 149
Cdd:PRK10896   86 fVQLEQPIAFDAIDNQPVDLLFALLVPADQCKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITE 154
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
7-147 5.70e-36

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 121.16  E-value: 5.70e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   7 ILTPGRSLVNVPGGSKKRVLEQIAN-LVARDLVDldsQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVLRLD 85
Cdd:pfam00359   1 LLDKELIFLNLEAKSKEEAIEFLADkLVEAGYVE---PAYLEAILEREKEGSTGIGNGIAIPHARSEAVKKPGIAVLTLK 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1376235113  86 AAVDFDAIDGAPVDLLFVLLVPEAATdEHLELLRQIASMLDRSDVRDRLRHAQDSENLYQVV 147
Cdd:pfam00359  78 EPVDFGSEDGKPVKLIFLLAAPDNEA-SHLKILSQLARLLQDEEFVEKLLKAKDPEEILEIL 138
fruA TIGR00848
PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family ...
 15-134 1.11e-25

PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities. The fructose permeases of this family phosphorylate fructose on the 1-position. Those of family 4.6 phosphorylate fructose on the 6-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This model is specific for the IIA domain of the fructose PTS transporters. Also similar to the Enzyme IIA Fru subunits of the PTS, but included in TIGR01419 rather than this model, is enzyme IIA Ntr (nitrogen), also called PtsN, found in E. coli and other organisms, which may play a solely regulatory role. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 273298 [Multi-domain]  Cd Length: 129  Bit Score: 94.65  E-value: 1.11e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113  15 VNVPGGSKKRVLEQIANLVARDLVDLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVLRLDAAVDFDAID 94
Cdd:TIGR00848   9 LDQQFTSKEDVIKFLANKLLENGYISDTEEFLEDLLKREEEGTTGIGDGVAIPHAKSAAVKQPFVAIARLVKGVDWQSLD 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1376235113  95 GAPVDLLFVLLVPEA-ATDEHLELLRQIASMLDRSDVRDRL 134
Cdd:TIGR00848  89 GKPVKLIFLIAVPKDeAGNTHLKALSQLARLLLNDEFRAKL 129
PRK09913 PRK09913
PTS fructose transporter subunit IIA;
15-147 4.58e-19

PTS fructose transporter subunit IIA;


Pssm-ID: 182141 [Multi-domain]  Cd Length: 148  Bit Score: 78.00  E-value: 4.58e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113  15 VNVPGGSKKRVLEQIANLVARDLVDLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVLRLDAAVDFDAID 94
Cdd:PRK09913   11 LNIQGNGAYSILKQLATIALQNGFITDSHQFLQTLLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWQASD 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1376235113  95 GAPVDLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAqDSENLYQVV 147
Cdd:PRK09913   91 GEDVNCWICLGVPQSGEEDQVKIIGTLCRKIIHQDFIHQLKQG-DTDQVLALL 142
PRK09765 PRK09765
PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
 4-144 2.41e-17

PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional


Pssm-ID: 182066 [Multi-domain]  Cd Length: 631  Bit Score: 77.85  E-value: 2.41e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   4 LEQILTPGRSLVNVPGGSKKRVLEQIANLVARDLVDLDSQDIFESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSAVLR 83
Cdd:PRK09765    3 LTTLTHRDLLCLNARFTSREEAIHALAQRLAALGKISSTEQFLEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVAT 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1376235113  84 LDAAVDFDAIDGA-PVDLLFVLLVPEA-ATDEHLELLRQIASMLDRSDVRDRLRHAQDSENLY 144
Cdd:PRK09765   83 LSEPLQWEGVDGPeAVDLIFLLAIPPNeAGTTHMQLLTALTTRLADDEIRARIQSATTPDELL 145
MtlA2 COG4668
Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and ...
 7-146 6.06e-16

Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism];


Pssm-ID: 443705 [Multi-domain]  Cd Length: 143  Bit Score: 69.80  E-value: 6.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   7 ILTPGRSLVNVPGGSKKRVLEQIAN-LVARDLVDldsQDIFESLVAREKLGSTGFGNGIAIPHcrlpgcaAPVSA----- 80
Cdd:COG4668     3 ILTKENIRLNASAANKEEAIRLAGQlLVEAGYVE---PEYIDAMLEREAQVSTYLGNGIAIPH-------GTNEAkdlvl 72

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1376235113  81 -----VLRLDAAVDFDaiDGAPVDLLFVLlvpEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSENLYQV 146
Cdd:COG4668    73 ktgisVLQFPDGVDWG--DGNTVYLVIGI---AAKSDEHLEILRQLARVLSDEENVEKLAKATDAEEILAL 138
PRK11109 PRK11109
fused PTS fructose transporter subunit IIA/HPr protein;
20-144 2.91e-08

fused PTS fructose transporter subunit IIA/HPr protein;


Pssm-ID: 236849 [Multi-domain]  Cd Length: 375  Bit Score: 51.49  E-value: 2.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113  20 GSKKRVLEQIAN-LVARDLVDldsQDIFESLVAREKLGSTGFGNGIAIPHcrlpGCAAPVSAVLRLDAAV-DF-DAIDGA 96
Cdd:PRK11109   16 GNKEEAIRQVAAaLTQAGNVA---EGYVDGMLAREQQTSTFLGNGIAIPH----GTTDTRDLVLKTGVQVfQFpQGVTWG 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1376235113  97 PVDLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSENLY 144
Cdd:PRK11109   89 DGQTAYVAIGIAAKSDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELR 136
PRK09665 PRK09665
PTS galactitol transporter subunit IIA;
21-141 8.58e-05

PTS galactitol transporter subunit IIA;


Pssm-ID: 182023 [Multi-domain]  Cd Length: 150  Bit Score: 40.17  E-value: 8.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113  21 SKKRVLEQIAN-LVARDLVdldsQDIF-ESLVAREKLGSTGFG---NGIAIPHCRLPGCAAPVSAVLRLDAAVDFDAIDG 95
Cdd:PRK09665   14 DRSEALTHIGNeMLAKGVV----HDTYpQALIAREAEFPTGIMleqHAVAIPHCEAIHAKSPAIYLIRPDKKVHFQQADD 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1376235113  96 ---APVDLLFVLLVPEAAtdEHLELLRQIASMLDRSDVRDRLRHAQDSE 141
Cdd:PRK09665   90 dndVAVSLVIALIVENPQ--QQLKLLRCLFGKLQQPDIVETLLTLPETQ 136
PRK15083 PRK15083
PTS system mannitol-specific transporter subunit IICBA; Provisional
 47-141 4.60e-04

PTS system mannitol-specific transporter subunit IICBA; Provisional


Pssm-ID: 237905 [Multi-domain]  Cd Length: 639  Bit Score: 39.27  E-value: 4.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113  47 ESLVAREKLGSTGFGNGIAIPHcrlpGCAAPVSAVLRLD-------AAVDFdaidGAPVDLLFVLLVPEAA-TDEHLELL 118
Cdd:PRK15083  534 DAMLDREKLTSTYLGESIAVPH----GTVEAKDRVLKTGvvfcqypEGVRF----GEEEDDIARLVIGIAArNNEHIQVI 605

                          90       100
                  ....*....|....*....|...
gi 1376235113 119 RQIASMLDRSDVRDRLRHAQDSE 141
Cdd:PRK15083  606 TSLTNALDDESVIERLAHTTSVD 628
PRK09863 PRK09863
putative frv operon regulatory protein; Provisional
 4-113 1.47e-03

putative frv operon regulatory protein; Provisional


Pssm-ID: 182121 [Multi-domain]  Cd Length: 584  Bit Score: 37.91  E-value: 1.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376235113   4 LEQILTPGRSL--VNVPGGSKKRVLEQI-ANLVARDLVDLDSQdifESLVAREKLGSTGFGNGIAIPHCRLPGCAAPVSA 80
Cdd:PRK09863  445 PERFLSAPGSFhySNVRGEKWQHVTRQIcAQLVAQHLLTADEA---QRIIAREGAGNQLILNHLSIPHCWTEQERRYRGF 521

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1376235113  81 VLRLDAAVdfdAIDGAPVDLLFVLLVPEAATDE 113
Cdd:PRK09863  522 AITLAQPI---EVNNEVIYLVLIVLAAADAAHE 551
ae TIGR00834
anion exchange protein; The Anion Exchanger (AE) Family (TC 2.A.31)Characterized protein ...
 71-143 5.15e-03

anion exchange protein; The Anion Exchanger (AE) Family (TC 2.A.31)Characterized protein members of the AE family are found only in animals.They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule. [Transport and binding proteins, Anions]


Pssm-ID: 273290 [Multi-domain]  Cd Length: 900  Bit Score: 36.28  E-value: 5.15e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1376235113  71 LPGCAA----PVSAVLRLDAAVDFDAIDGAPV--DLLFVLLVPEAATDEHLELLRQIASMLDRSDVRDRLRHAQDSENL 143
Cdd:TIGR00834 187 LVGEVDfleqPALAFVRLKEAVPLEALLEVPVpvRFLFVLLGPSGPGKDYHEIGRAIATLMSDEVFHDAAYLADDRDDL 265
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH