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Conserved domains on  [gi|1382288952|ref|WP_108151911|]
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carbohydrate deacetylase [Vibrio splendidus]

Protein Classification

carbohydrate deacetylase( domain architecture ID 10180657)

carbohydrate deacetylase catalyzes the deacetylation of acetylated carbohydrates such as chitooligosaccharides at the nonreducing N-acetylglucosamine residue, an important step in the degradation of oligosaccharides

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdjC_EF3048_like cd10803
Enterococcus faecalis EF3048 and similar proteins; This subfamily is represented by a putative ...
 2-237 4.67e-98

Enterococcus faecalis EF3048 and similar proteins; This subfamily is represented by a putative cellobiose-phosphate cleavage protein EF3048 from Enterococcus faecalis v583. It is similar to Escherichia coli YdjC, a hypothetical protein encoded by the celG gene. EF3048 might function as a homodimer. Each of the monomers consists of a (beta/alpha)-barrel fold that forms an active homodimer. The molecular function of the EF3048 is unclear.


:

Pssm-ID: 212114  Cd Length: 228  Bit Score: 285.99  E-value: 4.67e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   2 KLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQGLVPEVGLHFTVTAGKPLTspEQVPSLVDEH 81
Cdd:cd10803     1 KLIVNADDFGLTKGVNYGIIEAHRNGVVTSTTLMVNMPGFEHAVELAKENPGLGVGVHLTLTCGKPLL--DDVPSLVDED 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  82 GHFFSNVTLFDKSDVDEGEVMLELNAQYQAAVDAGLKINHIDSHHFGGVFKSLKAAFTRTVNRIGLPVRRIDNILsgqDA 161
Cdd:cd10803    79 GNFRKQSDYEGEGEIDPEEVYREWKAQIEKFLALGLKPTHLDSHHHVHTHPQVLPVVERLAKEYGLPVRAGDTAI---LY 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1382288952 162 LQVPTPDAFDMRFFDEGVSLNGLQDLLLSYQTmmPDGVLELMCHPSSVASEqLKSLSSYSDKRVEEHQLLTSPTLK 237
Cdd:cd10803   156 LGVKTTDRFSDDFYGEGVSLENLLEILDEAAA--GYEVVEIMCHPAYVDQE-LLEISSYNLPRLKELEILTSPELK 228
 
Name Accession Description Interval E-value
YdjC_EF3048_like cd10803
Enterococcus faecalis EF3048 and similar proteins; This subfamily is represented by a putative ...
 2-237 4.67e-98

Enterococcus faecalis EF3048 and similar proteins; This subfamily is represented by a putative cellobiose-phosphate cleavage protein EF3048 from Enterococcus faecalis v583. It is similar to Escherichia coli YdjC, a hypothetical protein encoded by the celG gene. EF3048 might function as a homodimer. Each of the monomers consists of a (beta/alpha)-barrel fold that forms an active homodimer. The molecular function of the EF3048 is unclear.


Pssm-ID: 212114  Cd Length: 228  Bit Score: 285.99  E-value: 4.67e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   2 KLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQGLVPEVGLHFTVTAGKPLTspEQVPSLVDEH 81
Cdd:cd10803     1 KLIVNADDFGLTKGVNYGIIEAHRNGVVTSTTLMVNMPGFEHAVELAKENPGLGVGVHLTLTCGKPLL--DDVPSLVDED 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  82 GHFFSNVTLFDKSDVDEGEVMLELNAQYQAAVDAGLKINHIDSHHFGGVFKSLKAAFTRTVNRIGLPVRRIDNILsgqDA 161
Cdd:cd10803    79 GNFRKQSDYEGEGEIDPEEVYREWKAQIEKFLALGLKPTHLDSHHHVHTHPQVLPVVERLAKEYGLPVRAGDTAI---LY 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1382288952 162 LQVPTPDAFDMRFFDEGVSLNGLQDLLLSYQTmmPDGVLELMCHPSSVASEqLKSLSSYSDKRVEEHQLLTSPTLK 237
Cdd:cd10803   156 LGVKTTDRFSDDFYGEGVSLENLLEILDEAAA--GYEVVEIMCHPAYVDQE-LLEISSYNLPRLKELEILTSPELK 228
ChbG COG3394
Chitooligosaccharide deacetylase ChbG, YdjC/CelG family [Carbohydrate transport and metabolism] ...
 1-254 1.34e-80

Chitooligosaccharide deacetylase ChbG, YdjC/CelG family [Carbohydrate transport and metabolism];


Pssm-ID: 442621  Cd Length: 271  Bit Score: 243.30  E-value: 1.34e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   1 MKLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQGLVPEVGLHFTVTAGKPLTSPEQVPSLVDE 80
Cdd:COG3394     1 KKLIVNADDFGLSPGVNEAIIEAHREGILTSTSLMVNGPAFPEAAALARENPGLDVGLHLTLTSGRPLTPPEEVPSLVDE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  81 HGHFFSNVTLFDKSDV----DEGEVMLELNAQYQAAVDAGLKINHIDSHHFGGVFKSLKAAFTRTVNRIGLP-VR----- 150
Cdd:COG3394    81 DGRFFPSLGRLGVRAFlgraDLDEVEAELRAQIERFLAAGLPPTHLDSHQHVHLHPGVLEAVLDLAKEYGLPaVRlprep 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 151 -------RIDNILSGQ-----DALQVPTPDAFDMRFFDEGVSLNGLQDLLLSyqtmMPDGVLELMCHPSSVaSEQLKSLS 218
Cdd:COG3394   161 apailrrPGLAALARGarrraRRAGLPTNDGFFGLFYSGKMTEERLLRLLDA----LPPGVTEIMCHPGFV-DPELRAIS 235

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1382288952 219 SYSDKRVEEHQLLTSPTLKQWLADHQIECIGFDDLR 254
Cdd:COG3394   236 SYTYPREAELAALTSPEVKEALEERGIELITYRDLR 271
PRK02134 PRK02134
chitin disaccharide deacetylase;
1-253 3.58e-62

chitin disaccharide deacetylase;


Pssm-ID: 235007  Cd Length: 249  Bit Score: 195.55  E-value: 3.58e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   1 MKLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQglVPE--VGLHFTVTAGKPLTspeQVPSLV 78
Cdd:PRK02134    3 RLLIVNADDFGLSKGQNYGIIEAHRNGVVTSTTAMVNMPAIDHAVQLSRE--YPSlgVGMHFVLTAGKPLT---AMPSLT 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  79 DEHGHFFSNV-TLFDKSDVDEGEVMLELNAQYQAAVDA-GLKINHIDSHHFGGVFKSLKAAFTRTVNRIGLPVRRIDNil 156
Cdd:PRK02134   78 DRDGLLGKWIwQLAEEGTLPLEEIAQELAAQYERFLSLfGRKPTHLDSHHHVHMLPQIFPIVARFAAEYGVPLRIDSN-- 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 157 SGQDALQVPTPDAFDMRFFDEGVSLNGLQDLLLSYQTMMpDGVLELMCHPSSVASEQLKslSSYSDKRVEEHQLLTSPTL 236
Cdd:PRK02134  156 AGDLPANLRSSDGFSSDFYGEEVSEDLFLQLLDRSKHRG-EQSLEVMCHPAFIDNTLRQ--SAYCYPRLTELEVLTSASL 232

                         250
                  ....*....|....*..
gi 1382288952 237 KQWLADHQIECIGFDDL 253
Cdd:PRK02134  233 KEAIAERGYRLGSYLDL 249
YdjC pfam04794
YdjC-like protein; Family of YdjC-like proteins. This region is possibly involved in the the ...
 2-242 9.95e-55

YdjC-like protein; Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.


Pssm-ID: 461430  Cd Length: 187  Bit Score: 174.31  E-value: 9.95e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   2 KLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELyhQGLVPEVGLHFTVTAGKPLTSPEQVPSLVDEH 81
Cdd:pfam04794   1 RLIINADDFGLSPGVNRAIIELLEAGILTSTSLMVNGPAAPEAAAL--AKAAPALGLHLTLTSGKPLLPPEEVPSLVDED 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  82 GHFFSNVTLFDKsdVDEGEVMLELNAQYQAAVDAGLKINHIDSHHFggvfkslkaaftrtvnriglpvrridnilsgqdA 161
Cdd:pfam04794  79 GRFFGFRYLLRR--LDLAEVEREIRAQIERFLDLGLPPDHVDGHQH---------------------------------V 123

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 162 LQVPtpdafdmrffdeGVsLNGLQDLLLSYQtmMPDGVLELMCHPSSVaSEQLKSlSSYSDKRVEEHQLLTSPTLKQWLA 241
Cdd:pfam04794 124 HVLP------------GV-REALLDLALLDR--LPPGGTEIMCHPGYV-DEALRA-SSLTYQREAELAALTSPEFREALE 186


                  .
gi 1382288952 242 D 242
Cdd:pfam04794 187 E 187
 
Name Accession Description Interval E-value
YdjC_EF3048_like cd10803
Enterococcus faecalis EF3048 and similar proteins; This subfamily is represented by a putative ...
 2-237 4.67e-98

Enterococcus faecalis EF3048 and similar proteins; This subfamily is represented by a putative cellobiose-phosphate cleavage protein EF3048 from Enterococcus faecalis v583. It is similar to Escherichia coli YdjC, a hypothetical protein encoded by the celG gene. EF3048 might function as a homodimer. Each of the monomers consists of a (beta/alpha)-barrel fold that forms an active homodimer. The molecular function of the EF3048 is unclear.


Pssm-ID: 212114  Cd Length: 228  Bit Score: 285.99  E-value: 4.67e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   2 KLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQGLVPEVGLHFTVTAGKPLTspEQVPSLVDEH 81
Cdd:cd10803     1 KLIVNADDFGLTKGVNYGIIEAHRNGVVTSTTLMVNMPGFEHAVELAKENPGLGVGVHLTLTCGKPLL--DDVPSLVDED 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  82 GHFFSNVTLFDKSDVDEGEVMLELNAQYQAAVDAGLKINHIDSHHFGGVFKSLKAAFTRTVNRIGLPVRRIDNILsgqDA 161
Cdd:cd10803    79 GNFRKQSDYEGEGEIDPEEVYREWKAQIEKFLALGLKPTHLDSHHHVHTHPQVLPVVERLAKEYGLPVRAGDTAI---LY 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1382288952 162 LQVPTPDAFDMRFFDEGVSLNGLQDLLLSYQTmmPDGVLELMCHPSSVASEqLKSLSSYSDKRVEEHQLLTSPTLK 237
Cdd:cd10803   156 LGVKTTDRFSDDFYGEGVSLENLLEILDEAAA--GYEVVEIMCHPAYVDQE-LLEISSYNLPRLKELEILTSPELK 228
ChbG COG3394
Chitooligosaccharide deacetylase ChbG, YdjC/CelG family [Carbohydrate transport and metabolism] ...
 1-254 1.34e-80

Chitooligosaccharide deacetylase ChbG, YdjC/CelG family [Carbohydrate transport and metabolism];


Pssm-ID: 442621  Cd Length: 271  Bit Score: 243.30  E-value: 1.34e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   1 MKLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQGLVPEVGLHFTVTAGKPLTSPEQVPSLVDE 80
Cdd:COG3394     1 KKLIVNADDFGLSPGVNEAIIEAHREGILTSTSLMVNGPAFPEAAALARENPGLDVGLHLTLTSGRPLTPPEEVPSLVDE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  81 HGHFFSNVTLFDKSDV----DEGEVMLELNAQYQAAVDAGLKINHIDSHHFGGVFKSLKAAFTRTVNRIGLP-VR----- 150
Cdd:COG3394    81 DGRFFPSLGRLGVRAFlgraDLDEVEAELRAQIERFLAAGLPPTHLDSHQHVHLHPGVLEAVLDLAKEYGLPaVRlprep 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 151 -------RIDNILSGQ-----DALQVPTPDAFDMRFFDEGVSLNGLQDLLLSyqtmMPDGVLELMCHPSSVaSEQLKSLS 218
Cdd:COG3394   161 apailrrPGLAALARGarrraRRAGLPTNDGFFGLFYSGKMTEERLLRLLDA----LPPGVTEIMCHPGFV-DPELRAIS 235

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1382288952 219 SYSDKRVEEHQLLTSPTLKQWLADHQIECIGFDDLR 254
Cdd:COG3394   236 SYTYPREAELAALTSPEVKEALEERGIELITYRDLR 271
PRK02134 PRK02134
chitin disaccharide deacetylase;
1-253 3.58e-62

chitin disaccharide deacetylase;


Pssm-ID: 235007  Cd Length: 249  Bit Score: 195.55  E-value: 3.58e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   1 MKLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQglVPE--VGLHFTVTAGKPLTspeQVPSLV 78
Cdd:PRK02134    3 RLLIVNADDFGLSKGQNYGIIEAHRNGVVTSTTAMVNMPAIDHAVQLSRE--YPSlgVGMHFVLTAGKPLT---AMPSLT 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  79 DEHGHFFSNV-TLFDKSDVDEGEVMLELNAQYQAAVDA-GLKINHIDSHHFGGVFKSLKAAFTRTVNRIGLPVRRIDNil 156
Cdd:PRK02134   78 DRDGLLGKWIwQLAEEGTLPLEEIAQELAAQYERFLSLfGRKPTHLDSHHHVHMLPQIFPIVARFAAEYGVPLRIDSN-- 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 157 SGQDALQVPTPDAFDMRFFDEGVSLNGLQDLLLSYQTMMpDGVLELMCHPSSVASEQLKslSSYSDKRVEEHQLLTSPTL 236
Cdd:PRK02134  156 AGDLPANLRSSDGFSSDFYGEEVSEDLFLQLLDRSKHRG-EQSLEVMCHPAFIDNTLRQ--SAYCYPRLTELEVLTSASL 232

                         250
                  ....*....|....*..
gi 1382288952 237 KQWLADHQIECIGFDDL 253
Cdd:PRK02134  233 KEAIAERGYRLGSYLDL 249
YdjC pfam04794
YdjC-like protein; Family of YdjC-like proteins. This region is possibly involved in the the ...
 2-242 9.95e-55

YdjC-like protein; Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.


Pssm-ID: 461430  Cd Length: 187  Bit Score: 174.31  E-value: 9.95e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   2 KLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELyhQGLVPEVGLHFTVTAGKPLTSPEQVPSLVDEH 81
Cdd:pfam04794   1 RLIINADDFGLSPGVNRAIIELLEAGILTSTSLMVNGPAAPEAAAL--AKAAPALGLHLTLTSGKPLLPPEEVPSLVDED 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  82 GHFFSNVTLFDKsdVDEGEVMLELNAQYQAAVDAGLKINHIDSHHFggvfkslkaaftrtvnriglpvrridnilsgqdA 161
Cdd:pfam04794  79 GRFFGFRYLLRR--LDLAEVEREIRAQIERFLDLGLPPDHVDGHQH---------------------------------V 123

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 162 LQVPtpdafdmrffdeGVsLNGLQDLLLSYQtmMPDGVLELMCHPSSVaSEQLKSlSSYSDKRVEEHQLLTSPTLKQWLA 241
Cdd:pfam04794 124 HVLP------------GV-REALLDLALLDR--LPPGGTEIMCHPGYV-DEALRA-SSLTYQREAELAALTSPEFREALE 186


                  .
gi 1382288952 242 D 242
Cdd:pfam04794 187 E 187
YdjC_like_1 cd10805
uncharacterized YdjC-like family proteins from bacteria; The subfamily contains many ...
 2-253 3.09e-48

uncharacterized YdjC-like family proteins from bacteria; The subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.


Pssm-ID: 212116  Cd Length: 251  Bit Score: 159.68  E-value: 3.09e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   2 KLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELY--HQGLVpeVGLHFTVTAGKPLTSPEQVPSLVD 79
Cdd:cd10805     1 KLLVRADDLGYSEGVNYGILKAVRNGIVRSTGLMVNMPAAEHALELIkdYPDVC--LGLHTNIVLGKPLSDPELIPSLVD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  80 EHGHFFS-----NVTLFDKSDVDEGEVMLELNAQYQAAVD-AGLKINHIDSHhfgGVF-KSLKAAFTRTVNRIGLPVrrI 152
Cdd:cd10805    79 ENGEFKSskeyrAELAEGEDFVNYEEVYLEIEAQVERFIElVGRKPDYIEGH---AVEtPNFEKAIEDVAEKYGIPY--N 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 153 DNILSGQDALQVPTPDAFDMRFFDEGVslNGLQDLLLSYQTMMPDGVLELMCHPSSVASEQLKSlSSYSDKRVEEHQLLT 232
Cdd:cd10805   154 GDYLPKDSKLSGGSADYMNKPFSGEKY--DPLEDFFGLLESAKDDEIALLVFHPGYLDDYLLDH-SSLTLPRCKDLEALT 230

                         250       260
                  ....*....|....*....|.
gi 1382288952 233 SPTLKQWLADHQIECIGFDDL 253
Cdd:cd10805   231 SPEVKEWLEENDIELITYRDL 251
YdjC_like cd10788
YdjC-family proteins; YdjC-family proteins are widely distributed, from human to bacteria. It ...
 3-234 1.54e-46

YdjC-family proteins; YdjC-family proteins are widely distributed, from human to bacteria. It is represented by an uncharacterised protein YdjC (also known as ChbG), encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. This subfamily also includes hopanoid biosynthesis associated proteins HpnK and many uncharacterized YdjC homologs. Although the exact molecular function of the YdjC-family proteins remains unclear, it has been suggested that they play a role in the cleavage of cellobiosephosphate.


Pssm-ID: 212100 [Multi-domain]  Cd Length: 243  Bit Score: 155.25  E-value: 1.54e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   3 LILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQGLVPEVGLHFTVTAGKPLTSPEQVPSLVDEHG 82
Cdd:cd10788     1 LILNADDFGLTHAVNEGIIDAHRNGRLTSTSLMVNSPASAEAAALAKRNPRLDLGLHLNLTEGQPLTPPAKSPSLLDEAG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  83 HFFSNVT----LFDKSDVDegEVMLELNAQYQAAVDAGLKINHIDSHHFGGVFKSLKAAFTRTVNRIG-LPVRRIDNILS 157
Cdd:cd10788    81 RFKSSPIfrrsFEGKLNAA--EVRKEIEAQIDRFKELGRTPDHIDSHHHVHVLPVLLGVLLELLREGGiLPVRIPGNLEF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 158 GQD---------------ALQVPTPDAFDMRFFDEGVSLNGLQDLLLsyqtMMPDGVLELMCHPSSVASEQlkSLSSYSD 222
Cdd:cd10788   159 NGNnrydkdllpelerflKLKIFTHDYSLDLYVDGTIDQGPILRLPD----LVKEGVAELMVHPGLPDDIR--ALGSDLD 232

                         250
                  ....*....|..
gi 1382288952 223 kRVEEHQLLTSP 234
Cdd:cd10788   233 -REKELEALLSP 243
YdjC_TTHB029_like cd10802
Thermus thermophiles TTHB029 and similar proteins; This subfamily is represented by an ...
 3-236 8.34e-45

Thermus thermophiles TTHB029 and similar proteins; This subfamily is represented by an YdjC-family protein TTHB029 from Thermus thermophilus HB8; it is similar to Escherichia coli YdjC, a hypothetical protein encoded by the celG gene. TTHB029 functions as a homodimer. Each of monomer consists of (beta/alpha)-barrel fold. The molecular function of TTHB029 is unclear.


Pssm-ID: 212113  Cd Length: 251  Bit Score: 150.91  E-value: 8.34e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   3 LILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQGLVPEVGLHFTVTA------GKPLTSPEQVPS 76
Cdd:cd10802     3 LIIHADDFGMSHSANEAIIELLEEGIVSSASVMVPCPWFPEAAAYAAANPEIDVGLHLTLTSewdnyrWGPLTPKEQVPS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  77 LVDEHGHFFSNVTLFDKsDVDEGEVMLELNAQYQAAVDAGLKINHIDShHFGGVF--KSLKAAFTRTVNRIGLPVRRIDN 154
Cdd:cd10802    83 LVDEEGYFPPDVAELEA-NADPDEVEKELRAQIERALKAGIRPTHLDS-HMGSLYggPEFLELYLRLAAEYGLPVRLPRL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 155 I--LSGQDALQVPTP--DAFDMRFFDEGVSLNG---LQDLLLSYQTM---MPDGVLELMCHPsSVASEQLKSLSSYSDKR 224
Cdd:cd10802   161 LaaLGRQAALADVGElaYAFGVPVLDDLIGGPFpvtYEEKRASYIQAlrkLPPGLTELIIHP-ALDTEELKAIEDSAQKR 239

                         250
                  ....*....|..
gi 1382288952 225 VEEHQLLTSPTL 236
Cdd:cd10802   240 QWDYDLFTDPEL 251
YdjC cd10808
Escherichia coli YdjC-like family of proteins; Uncharacterized subfamily of YdjC-like family ...
 2-234 7.91e-41

Escherichia coli YdjC-like family of proteins; Uncharacterized subfamily of YdjC-like family of proteins. Included in this subfamily is the uncharacterized Escherichia coli protein YdjC (also known as ChbG), encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.


Pssm-ID: 212119  Cd Length: 259  Bit Score: 140.86  E-value: 7.91e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   2 KLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELY--HQGLvpEVGLHFTVTAGKPLTSPEQVPSLVD 79
Cdd:cd10808     1 RLIVNADDFGLHPGVNRAILEAHRAGIVTSTTLMAGGPAFDDAVALAreNPGL--GVGVHLTLVGGLPVVPPAEIPSLVD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  80 EHGHFFSNVTLFDKSD----VDEGEVMLELNAQYQAAVDAGLKINHIDSHHFGGVFKSLKAAFTRTVNRIGLP-VR---- 150
Cdd:cd10808    79 EDGVFLRSYLAFAKRLltgrIRLSEVERELRAQIERVLDAGIRPTHLDSHQHTHVLPGVLDIVLDLAARYGIPaVRipde 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 151 -----RIDNILSGQ-----------------DALQVPTPDAFdmrffdEGVSLNGL--QDLLLSYQTMMPDGVLELMCHP 206
Cdd:cd10808   159 ppffaRLAKSGLRRragvglsvlaarararlRRLGLSTPDGF------WGIVAGGAldEATLRAILDRLPEGVTELMCHP 232

                         250       260
                  ....*....|....*....|....*...
gi 1382288952 207 SSVaSEQLKSLSSYSDKRVEEHQLLTSP 234
Cdd:cd10808   233 GED-DAALSAPTRWGYHWEEELAALLSP 259
YdjC_HpnK_like cd10804
hopanoid biosynthesis associated protein HpnK and similar proteins; The subfamily includes ...
 2-234 8.07e-30

hopanoid biosynthesis associated protein HpnK and similar proteins; The subfamily includes some uncharacterized proteins annotated as hopanoid biosynthesis associated proteins, HpnK. They show high sequence similarity to proteins from the YdjC-family, the latter is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source.


Pssm-ID: 212115  Cd Length: 261  Bit Score: 112.34  E-value: 8.07e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   2 KLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIEL--YHQGLvpEVGLHFTVTAGKPLTSPEQVPSLVD 79
Cdd:cd10804     1 RLIVTADDFGLSHEVNEAVEQAHREGILTSASLMVGGPAADDAVARarRLPGL--GVGLHLVLVEGRSVLPPEEIPDLVD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  80 EHGHFFSN-----VTLFDKSDVDEgEVMLELNAQYQAAVDAGLKINHIDSH-HFG---GVFKSL---------------- 134
Cdd:cd10804    79 AQGRFPSDpvragFRYFFSPAARR-QLRAEIRAQFEAFRATGLPLDHVDGHkHFHlhpTVFDLLlelapeygiravrlpr 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 135 -----KAAFTRTVNRIGLPVRridnILSGQDALQVPTPDAFDMRFFDE--GVSLNG--LQDLLLSYQTMMPDGVLELMCH 205
Cdd:cd10804   158 eplrlNLAADRQWLGRGLGAL----IFRPLARRLRRRLRRAGLRVNDRvfGLLWSGamTEDYLLALLEHLPEGLTEIYFH 233

                         250       260
                  ....*....|....*....|....*....
gi 1382288952 206 PSSVASEQLKSLSSYSDKrVEEHQLLTSP 234
Cdd:cd10804   234 PAVAPDAELRGRMPGYRH-AEELAALLSP 261
YdjC_like_2 cd10806
uncharacterized YdjC-like family proteins from eukaryotes; This eukaryotic subfamily contains ...
 2-240 9.82e-24

uncharacterized YdjC-like family proteins from eukaryotes; This eukaryotic subfamily contains hypothetical and uncharacterized proteins, and belongs to the YdjC-like family of uncharacterized proteins. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.


Pssm-ID: 212117  Cd Length: 280  Bit Score: 96.63  E-value: 9.82e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   2 KLILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQGLVPeVGLHFTVTAGKPLTSP-EQVPSLVDE 80
Cdd:cd10806     1 KLVVNADDFGYCPQRNRGIVECFLAGVVTSVSLLVNGSSAEDAAKLAKRHNIP-IGLHLNLTEGRPVSDElRGVSSLLGK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  81 HGHF---FSNVTLFDKSDVDEGEVMLELNAQYQAAVDAGLKI-NHIDSHHFGGVFKSLKAAFTRTVNRIGLPVRRIdnil 156
Cdd:cd10806    80 DGFFlgkMGFREALKQGDIDMSEVRIEIRAQIAWFIELLGRLpTHVDGHQHVHVLPGVREVFAEVLQEFGIKKTRI---- 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 157 SGQDALQVPTPDAFDMRFFDEGVSLNGLQ-----------------------------------DLLLSYQTMMPDGVLE 201
Cdd:cd10806   156 PVELGLESCNWIEEARREFYKGVEEDALEavkifsshgirwtdyfiglstmgknmteqrlqsslITFKKSKPASRSVTCE 235

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1382288952 202 LMCHP--SSVA-----SEQLKSLSSySDKRVEEHQLLTSPTLKQWL 240
Cdd:cd10806   236 LMVHPgyPSVNgcggcGEGPDDFSQ-SPDREHELKVLTSPSLRNFL 280
YdjC_like_3 cd10807
uncharacterized YdjC-like family proteins from bacteria; This subfamily contains many ...
 3-212 1.05e-11

uncharacterized YdjC-like family proteins from bacteria; This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.


Pssm-ID: 212118  Cd Length: 251  Bit Score: 63.01  E-value: 1.05e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952   3 LILNADDFGLTESVNHGIVDCFKAGLVKSTTIMMNQPGTQHAIELYHQG-LVPEVGLHFTVTAGKPLTSPeqvpslvdeH 81
Cdd:cd10807     1 IILCADDFGLSPGVSAAILDLAEAGRLSATSCMVNGPAWPEAAAALRPLrGRADIGLHLNLTEGFPLLAP---------G 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952  82 GHFFSNVTLFDKS---DVDEGEVMLELNAQYQAAVDA-GLKINHID----SHHFGGVFKSLKAAFTR-----------TV 142
Cdd:cd10807    72 GLLPPLGRLLLRSllgRLDRAAIRAEIEAQLDAFEEAfGRAPDFVDghqhVHQLPVIRDALLDLLARrypggrpwlrsTA 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1382288952 143 NRIGLPVRRIDNI-------LSG-----QDALQVPTPDAF-DMRFFDEGVslnGLQDLLLSYQTMMPDGVLeLMCHPSSV 209
Cdd:cd10807   152 EPLPAGLPLAGLLkalvlaaLGAgalrrLARAGIPTNRGFaGVYDFGPQA---DYAALLRRWLAAAGDGPL-IMCHPGLP 227


                  ...
gi 1382288952 210 ASE 212
Cdd:cd10807   228 DEE 230
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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