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Conserved domains on  [gi|1383426755|ref|WP_108564100|]
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hypothetical protein [Acinetobacter baumannii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SmpA_OmlA super family cl46449
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
 1-73 9.58e-09

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


The actual alignment was detected with superfamily member COG2913:

Pssm-ID: 480789  Cd Length: 128  Bit Score: 50.42  E-value: 9.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383426755   1 MRKLRIACLIGMAMLSMSGCAVFMA------GNQPSKKNLNVLNPGSSRNYVIAEFGAPVLSE-YRDGTRVEIYTFQQGY 73
Cdd:COG2913     1 MRKLRLLLLALLLALLLAGCSSFVYkidiqqGNVVTQEDLAQLKPGMTKEQVRYLLGTPSLTDtFHPNRWYYVYSFRRGG 80
 
Name Accession Description Interval E-value
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-73 9.58e-09

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 50.42  E-value: 9.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383426755   1 MRKLRIACLIGMAMLSMSGCAVFMA------GNQPSKKNLNVLNPGSSRNYVIAEFGAPVLSE-YRDGTRVEIYTFQQGY 73
Cdd:COG2913     1 MRKLRLLLLALLLALLLAGCSSFVYkidiqqGNVVTQEDLAQLKPGMTKEQVRYLLGTPSLTDtFHPNRWYYVYSFRRGG 80
 
Name Accession Description Interval E-value
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-73 9.58e-09

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 50.42  E-value: 9.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1383426755   1 MRKLRIACLIGMAMLSMSGCAVFMA------GNQPSKKNLNVLNPGSSRNYVIAEFGAPVLSE-YRDGTRVEIYTFQQGY 73
Cdd:COG2913     1 MRKLRLLLLALLLALLLAGCSSFVYkidiqqGNVVTQEDLAQLKPGMTKEQVRYLLGTPSLTDtFHPNRWYYVYSFRRGG 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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