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Conserved domains on  [gi|1421785288|ref|WP_111885395|]
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MULTISPECIES: OmpA family protein [unclassified Acinetobacter]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 3.71e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 133.45  E-value: 3.71e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  54 RLLFGFDDYQIQPHQQVKLNTLATQLIKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRG 133
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                          90       100
                  ....*....|....*....|....
gi 1421785288 134 AEQPMVSNDTETNRAINRRVNVTI 157
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 3.71e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 133.45  E-value: 3.71e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  54 RLLFGFDDYQIQPHQQVKLNTLATQLIKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRG 133
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                          90       100
                  ....*....|....*....|....
gi 1421785288 134 AEQPMVSNDTETNRAINRRVNVTI 157
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 51-159 2.00e-38

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 132.21  E-value: 2.00e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  51 LPERLLFGFDDYQIQPHQQVKLNTLATQLIKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQII 130
Cdd:COG2885   185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAV 264

                          90       100
                  ....*....|....*....|....*....
gi 1421785288 131 GRGAEQPMVSNDTETNRAINRRVNVTIIP 159
Cdd:COG2885   265 GYGESRPVASNDTEEGRAKNRRVEIVVLK 293
PRK09967 PRK09967
OmpA family protein;
1-159 2.50e-32

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 112.76  E-value: 2.50e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288   1 MLKNAFKVLFILAftATMTACMS-LGNLSYKQARMLKKEGFVLTNDGWTLALPERLLFGFDDYQIQPHQQVKLNTLATQL 79
Cdd:PRK09967    1 MIKHLVAPLIFTS--LILTGCQSpQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  80 IKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGY-NSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTII 158
Cdd:PRK09967   79 ASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQiPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVIT 158


                  .
gi 1421785288 159 P 159
Cdd:PRK09967  159 T 159
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 57-150 4.76e-22

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 84.33  E-value: 4.76e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  57 FGFDDYQIQPHQQVKLNTLATQLIKYDL-NKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRGAE 135
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1421785288 136 QPMVSNDTETNRAIN 150
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 86-157 8.39e-20

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 80.04  E-value: 8.39e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1421785288  86 KIKFIGHTDNV-----GQANyNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTI 157
Cdd:TIGR03350  62 RITVVGHTDNVpirtaRFPS-NWHLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 3.71e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 133.45  E-value: 3.71e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  54 RLLFGFDDYQIQPHQQVKLNTLATQLIKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRG 133
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                          90       100
                  ....*....|....*....|....
gi 1421785288 134 AEQPMVSNDTETNRAINRRVNVTI 157
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 51-159 2.00e-38

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 132.21  E-value: 2.00e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  51 LPERLLFGFDDYQIQPHQQVKLNTLATQLIKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQII 130
Cdd:COG2885   185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAV 264

                          90       100
                  ....*....|....*....|....*....
gi 1421785288 131 GRGAEQPMVSNDTETNRAINRRVNVTIIP 159
Cdd:COG2885   265 GYGESRPVASNDTEEGRAKNRRVEIVVLK 293
PRK09967 PRK09967
OmpA family protein;
1-159 2.50e-32

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 112.76  E-value: 2.50e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288   1 MLKNAFKVLFILAftATMTACMS-LGNLSYKQARMLKKEGFVLTNDGWTLALPERLLFGFDDYQIQPHQQVKLNTLATQL 79
Cdd:PRK09967    1 MIKHLVAPLIFTS--LILTGCQSpQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  80 IKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGY-NSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTII 158
Cdd:PRK09967   79 ASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQiPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVIT 158


                  .
gi 1421785288 159 P 159
Cdd:PRK09967  159 T 159
MotB COG1360
Flagellar motor protein MotB [Cell motility];
42-159 2.45e-26

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 97.61  E-value: 2.45e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  42 LTNDGWTLALPERLLFGFDDYQIQPHQQVKLNTLATQLIKYDlNKIKFIGHTDNV--GQANY--NQQLSEKRAQSVANVF 117
Cdd:COG1360    48 ITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYL 126

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1421785288 118 LKQGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTIIP 159
Cdd:COG1360   127 IEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 57-150 4.76e-22

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 84.33  E-value: 4.76e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  57 FGFDDYQIQPHQQVKLNTLATQLIKYDL-NKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRGAE 135
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1421785288 136 QPMVSNDTETNRAIN 150
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 86-157 8.39e-20

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 80.04  E-value: 8.39e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1421785288  86 KIKFIGHTDNV-----GQANyNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTI 157
Cdd:TIGR03350  62 RITVVGHTDNVpirtaRFPS-NWHLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
PRK10510 PRK10510
OmpA family lipoprotein;
45-159 2.08e-19

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 81.07  E-value: 2.08e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  45 DGWTLALPERLLFGFDDYQIQPHQQVKLNTLATQLIKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNS 124
Cdd:PRK10510  104 DNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDA 183

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1421785288 125 SNIQIIGRGAEQPMVSNDTETNRAINRRVNVTIIP 159
Cdd:PRK10510  184 SRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSP 218
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 54-153 7.08e-19

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 76.45  E-value: 7.08e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  54 RLLFGFDDYQIQPHQQVKLNTLATQLIKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRG 133
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|
gi 1421785288 134 AEQPMVSNDTETNRAINRRV 153
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRA 100
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 41-157 2.13e-18

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 79.28  E-value: 2.13e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  41 VLTNDGW-TLALPERLLFGFDDYQIQPHQQVKLNTLATQLIKYDlNKIKFIGHTDNVGQANY----NQQLSEKRAQSVAN 115
Cdd:PRK09038  120 VRRNELWiEIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKPAP-NPIHVEGFTDNVPIATAqfpsNWELSAARAASVVR 198

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1421785288 116 VFLKQGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTI 157
Cdd:PRK09038  199 LLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVI 240
PRK10808 PRK10808
outer membrane protein A; Reviewed
 56-157 3.24e-17

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 77.04  E-value: 3.24e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  56 LFGFDDYQIQPHQQVKLNTLATQLIKYDLN--KIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRG 133
Cdd:PRK10808  227 LFNFNKATLKPEGQQALDQLYSQLSNLDPKdgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMG 306

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1421785288 134 AEQPmVSNDTETNR----------AINRRVNVTI 157
Cdd:PRK10808  307 KSNP-VTGNTCDNVkpraalidclAPDRRVEIEV 339
motB PRK08944
flagellar motor protein MotB; Reviewed
 86-157 2.37e-14

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 68.50  E-value: 2.37e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1421785288  86 KIKFIGHTDNVGQAN--Y--NQQLSEKRAQSVANVFLK-QGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTI 157
Cdd:PRK08944  211 IITVSGHTDNVPISSelYrsNWDLSSARAVAVAHELLKvKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIII 287
PRK08126 PRK08126
hypothetical protein; Provisional
 86-157 5.96e-13

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 65.10  E-value: 5.96e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1421785288  86 KIKFIGHTDNV----GQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTI 157
Cdd:PRK08126  355 KVTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITV 430
PRK07033 PRK07033
DotU family type VI secretion system protein;
86-159 1.90e-12

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 63.53  E-value: 1.90e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1421785288  86 KIKFIGHTDNV--GQANY--NQQLSEKRAQSVANVFLKQGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTIIP 159
Cdd:PRK07033  346 NVLVTGYSDNVpiRTARFpsNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEITLLV 423
motB PRK08457
flagellar motor protein MotB; Reviewed
 35-157 1.48e-11

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 60.50  E-value: 1.48e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  35 LKKEGFVL--TNDGWTLALPERLLFGFDDYQI-QPHQQVKLNTLAtQLIKY--DLNKIKFIGHTDN--VGQANY--NQQL 105
Cdd:PRK08457  102 RKGEGGALdqIDNGIALKLPSKLLFENGSAEIiNADMMDYLKRIA-KIITKlpKQVKINVRGYTDNspLNKSRYkdHYEL 180

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1421785288 106 SEKRAQSVANVFLKQGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTI 157
Cdd:PRK08457  181 AAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEIFF 232
PRK09040 PRK09040
hypothetical protein; Provisional
 55-159 1.55e-11

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 59.64  E-value: 1.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  55 LLFGFDDYQIQPHQQVKLNTLATQLIKY--DLNKIKFI-GHTDNV----GQANY--NQQLSEKRAQSVANVFLKQGYNSS 125
Cdd:PRK09040   90 VLFALNSDQLQPEGRELLKSLAGPLAAYlrARDEILMVsGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDAGVPAS 169

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1421785288 126 NIQIIGRGAEQPMVSNDTETNRAINRRVNVTIIP 159
Cdd:PRK09040  170 SVFAAAFGSEQPVASNADDEGRAKNRRVEIAPVP 203
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 64-157 9.80e-10

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 55.20  E-value: 9.80e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  64 IQPHQQVKLNTLATQLIKYDLNKIKFIGHTDNVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRGAEQPMVSNDT 143
Cdd:TIGR03789 150 IEPHFQPQLDEVATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQAFGESAPLKDEQE 229

                          90
                  ....*....|....
gi 1421785288 144 ETNRAINRRVNVTI 157
Cdd:TIGR03789 230 SESDFFDRRVTLTL 243
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
16-152 2.69e-09

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 52.95  E-value: 2.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  16 ATMTACMSLGNLSY-KQARMLKKEgfvltndgwtLALPERLLFGFDDYQIQPHQQVKLNTLATQLIKYDLNKIKFIGHTD 94
Cdd:PRK10802   41 TGMDANGGNGNMSSeEQARLQMQQ----------LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHAD 110

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1421785288  95 NVGQANYNQQLSEKRAQSVANVFLKQGYNSSNIQIIGRGAEQPMVSNDTETNRAINRR 152
Cdd:PRK10802  111 ERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 168
motB PRK07734
flagellar motor protein MotB; Reviewed
 91-159 9.71e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 49.74  E-value: 9.71e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1421785288  91 GHTDNVGQAN----YNQQLSEKRAQSVANVFLK-QGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTIIP 159
Cdd:PRK07734  180 GHTDNVPIANaqfaSNWELSVMRAVNFMQVLLEnKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLILP 253
PRK09039 PRK09039
peptidoglycan -binding protein;
55-153 3.17e-07

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 48.42  E-value: 3.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  55 LLFGFDDYQIQPHQQVKLNTLATQLIkyDLNK-----IKFI----GHTDNV---GQANY--NQQLSEKRAQSVANVFLKQ 120
Cdd:PRK09039  226 VLFPTGSAELNPEGQAEIAKLAAALI--ELAKeippeINWVlrvdGHTDNVplsGTGRFrdNWELSSARAISVVKFLIAL 303

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1421785288 121 GYNSSNIQIIGRGAEQPMVSNDTETNRAINRRV 153
Cdd:PRK09039  304 GVPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
motB PRK06667
flagellar motor protein MotB; Validated
 76-158 4.11e-07

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 47.87  E-value: 4.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  76 ATQLIKYDLNKIKFI---GHTDNV-----GQANYNQQLSEKRAQSVANVFLKQGYNS-SNIQIIGRGAEQPMVSNDTETN 146
Cdd:PRK06667  148 IASFIGFLDLAGRNFrieGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGDQSeSWFQVSGFAGSRPLATEDTPEG 227

                          90
                  ....*....|..
gi 1421785288 147 RAINRRVNVTII 158
Cdd:PRK06667  228 RAYNRRIDIVIL 239
PRK07034 PRK07034
hypothetical protein; Provisional
 87-155 2.34e-06

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 46.32  E-value: 2.34e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1421785288  87 IKFIGHTDN----VGQANYNQQLSEKRAQSVANVFLKQGY----NSSNIQIIGRGAEQPMVSNDTETNRAINRRVNV 155
Cdd:PRK07034  429 IEVIGHTDNkpfrSTSGNNNLKLSAARASVVADKLRESTQinetHQREISAIGRGESDPLADNATEEGRKRNRRVDI 505
PRK14693 PRK14693
hypothetical protein; Provisional
 46-159 1.32e-04

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 40.90  E-value: 1.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  46 GWTLALPERLLFGFDDYQIQPHQQVKLNTLATQLIKYDlNKIKFIGHTDN----VGQANYNQQLSEKRAQSVANVFLK-- 119
Cdd:PRK14693  365 GWLLVFKSDGAFDVGKANVRADFMHNIERLGLAFAPWP-GDLEVIGHTDSrpirTSEFPDNQALSEARARNVADELRKta 443

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1421785288 120 --------QGYNSSNIQIIGRGAEQPMVSNDTETNRAINRRVNV--TIIP 159
Cdd:PRK14693  444 lpggarapENAVQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVlwKVIP 493
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 46-157 7.74e-04

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 38.50  E-value: 7.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  46 GWTLALPERLLFGFDDYQIQPHQQVKLNTLATqLIKYDLNKIKFIGHTDN--VGQANY--NQQLSEKRAQSVANvFLKQG 121
Cdd:PRK06742  108 GVSVVIVDNLIFDTGDANVKPEAKEIISQLVG-FFQSVPNPIVVEGHTDSrpIHNDKFpsNWELSSARAANMIH-HLIEV 185

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1421785288 122 YN--SSNIQIIGRGAEQPMVSNDTETNRAINRRVNVTI 157
Cdd:PRK06742  186 YNvdDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
PRK06778 PRK06778
hypothetical protein; Validated
 53-158 4.12e-03

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 36.45  E-value: 4.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1421785288  53 ERLLFGFDDYQIQPHQQVKLNTLATQLIKYDlNKIKFIGHTDNVGQAN--YNQ-QLSEKRAQSVANVFLKQGYNSSNIQI 129
Cdd:PRK06778  152 NRNMFERGSAQIMPFFKTLLVELAPVFDSLD-NKIIITGHTDAMAYKNniYNNwNLSGDRALSARRVLEEAGMPEDKVMQ 230

                          90       100
                  ....*....|....*....|....*....
gi 1421785288 130 IGRGAEQpMVSNDTETNRAINRRVNVTII 158
Cdd:PRK06778  231 VSAMADQ-MLLDAKNPQSAGNRRIEIMVL 258
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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