|
Name |
Accession |
Description |
Interval |
E-value |
| prfB |
TIGR00020 |
peptide chain release factor 2; In many but not all taxa, there is a conserved real ... |
2-365 |
0e+00 |
|
peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]
Pssm-ID: 272858 [Multi-domain] Cd Length: 364 Bit Score: 542.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 2 ENPEIRTLLDEMTQKITSFRRSLDLDQLEEDIAEAENRMGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTV 81
Cdd:TIGR00020 1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 82 MFELQQEEYDAEIQEELEERIHLLQERLTTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQ 161
Cdd:TIGR00020 81 LLELAVEEDDEETFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 162 VETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSVDVMPELDDTIEIAINPDDLKID 241
Cdd:TIGR00020 161 VEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRID 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 242 TYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQ 321
Cdd:TIGR00020 241 TYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGWGSQ 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1423225808 322 IRSYVFHPYSMVKDHRTNYETGNVQAVMDGDLDGFIDAYLKQRL 365
Cdd:TIGR00020 321 IRSYVLHPYSMVKDLRTGYETGNVQAVLDGDIDQFIEAYLKWKL 364
|
|
| PRK06746 |
PRK06746 |
peptide chain release factor 2; Provisional |
44-365 |
5.67e-160 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 75726 [Multi-domain] Cd Length: 326 Bit Score: 451.49 E-value: 5.67e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 44 GFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELEERIHLLQERLTTYELSLLLNEPYD 123
Cdd:PRK06746 5 GFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLLLSDPYD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 124 HNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRI 203
Cdd:PRK06746 85 KNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 204 SPFDSAKRRHTSFCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQLKNR 283
Cdd:PRK06746 165 SPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQIKNR 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 284 EQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSYVFHPYSMVKDHRTNYETGNVQAVMDGDLDGFIDAYLKQ 363
Cdd:PRK06746 245 EHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRS 324
|
..
gi 1423225808 364 RL 365
Cdd:PRK06746 325 RI 326
|
|
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
26-359 |
2.01e-111 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 328.88 E-value: 2.01e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 26 LDQLEEDIAEAENRMGEPGFWDNTETAQKLINETNSLK---EKYQQFHQLSEELDELTvmfELQQEEYDAEIQEELEERI 102
Cdd:COG0216 6 LEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEpivEAYREYKKLLEDIEEAK---ELLEEESDPEMREMAKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 103 HLLQERLTTYE----LSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSV 178
Cdd:COG0216 83 EELEARLEELEeelkILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERKGWKVEILSASEGELGGYKEV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 179 TLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSVDVMPELDDtIEIAINPDDLKIDTYRASGAGGQHINKTES 258
Cdd:COG0216 163 IFRISGEGVYSRLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEE-VDVEINPKDLRIDTFRSSGAGGQHVNTTDS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 259 AVRITHIPTGTVVASQAQRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQmeIGWG--SQ-IRSYVFhPYSMVKD 335
Cdd:COG0216 242 AVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYEAEQQKQQAEIAAERKSQ--VGSGdrSErIRTYNF-PQGRVTD 318
|
330 340
....*....|....*....|....
gi 1423225808 336 HRTNYETGNVQAVMDGDLDGFIDA 359
Cdd:COG0216 319 HRINLTLYKLDEVMEGDLDELIDA 342
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
29-219 |
8.41e-77 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 234.58 E-value: 8.41e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 29 LEEDIAEAENRMGEPGFWDNTETAQKLINETNSLK---EKYQQFHQLSEELDELTVMF------ELQQEEYdaeiqEELE 99
Cdd:pfam03462 1 LEERYEELEALLSDPDVWDDQKRAQKLSKEYSELEpivEAYREYKQALEDLEEAKELLedpelaELAEEEL-----EELE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 100 ERIHLLQERLttyELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSVT 179
Cdd:pfam03462 76 KRLEELEEEL---KLLLLPKDPNDDKNAILEIRAGAGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEAT 152
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1423225808 180 LLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSV 219
Cdd:pfam03462 153 FEISGEGAYGRLKFESGVHRVQRVPPTESQGRIHTSFATV 192
|
|
| PCRF |
smart00937 |
This domain is found in peptide chain release factors; |
84-194 |
1.04e-45 |
|
This domain is found in peptide chain release factors;
Pssm-ID: 214923 [Multi-domain] Cd Length: 116 Bit Score: 152.23 E-value: 1.04e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 84 ELQQEEYDAEIQEELEERIHLLQ----ERLTTYELSLLLN-EPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESH 158
Cdd:smart00937 1 ELLEEEEDDEMRELAEEELEELEaeleEELEELLKLLLLPkDPNDDKNAILEIRAGAGGDEAALFAGDLLRMYLRYAERK 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 1423225808 159 GFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSE 194
Cdd:smart00937 81 GWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| prfB |
TIGR00020 |
peptide chain release factor 2; In many but not all taxa, there is a conserved real ... |
2-365 |
0e+00 |
|
peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]
Pssm-ID: 272858 [Multi-domain] Cd Length: 364 Bit Score: 542.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 2 ENPEIRTLLDEMTQKITSFRRSLDLDQLEEDIAEAENRMGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTV 81
Cdd:TIGR00020 1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 82 MFELQQEEYDAEIQEELEERIHLLQERLTTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQ 161
Cdd:TIGR00020 81 LLELAVEEDDEETFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 162 VETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSVDVMPELDDTIEIAINPDDLKID 241
Cdd:TIGR00020 161 VEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRID 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 242 TYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQ 321
Cdd:TIGR00020 241 TYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGWGSQ 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1423225808 322 IRSYVFHPYSMVKDHRTNYETGNVQAVMDGDLDGFIDAYLKQRL 365
Cdd:TIGR00020 321 IRSYVLHPYSMVKDLRTGYETGNVQAVLDGDIDQFIEAYLKWKL 364
|
|
| PRK06746 |
PRK06746 |
peptide chain release factor 2; Provisional |
44-365 |
5.67e-160 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 75726 [Multi-domain] Cd Length: 326 Bit Score: 451.49 E-value: 5.67e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 44 GFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELEERIHLLQERLTTYELSLLLNEPYD 123
Cdd:PRK06746 5 GFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLLLSDPYD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 124 HNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRI 203
Cdd:PRK06746 85 KNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 204 SPFDSAKRRHTSFCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQLKNR 283
Cdd:PRK06746 165 SPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQIKNR 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 284 EQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSYVFHPYSMVKDHRTNYETGNVQAVMDGDLDGFIDAYLKQ 363
Cdd:PRK06746 245 EHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRS 324
|
..
gi 1423225808 364 RL 365
Cdd:PRK06746 325 RI 326
|
|
| PRK05589 |
PRK05589 |
peptide chain release factor 2; Provisional |
40-363 |
1.64e-152 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235520 [Multi-domain] Cd Length: 325 Bit Score: 432.31 E-value: 1.64e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 40 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELEErIHLLQERLTTYELSLLLN 119
Cdd:PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSEEDDEMKKEIISE-VKNIKEEIDRFKIETLLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 120 EPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHR 199
Cdd:PRK05589 80 GEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 200 LVRISPFDSAKRRHTSFCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQ 279
Cdd:PRK05589 160 LVRISPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQ 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 280 LKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSYVFHPYSMVKDHRTNYETGNVQAVMDGDLDGFIDA 359
Cdd:PRK05589 240 HSNKETAMKMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVKDHRTGVETSNVDSVMDGDIDNFITQ 319
|
....
gi 1423225808 360 YLKQ 363
Cdd:PRK05589 320 YLKG 323
|
|
| PRK07342 |
PRK07342 |
peptide chain release factor 2; Provisional |
38-366 |
1.80e-139 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235997 [Multi-domain] Cd Length: 339 Bit Score: 400.02 E-value: 1.80e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 38 NRMGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELEERIHLLQERLTTYELSLL 117
Cdd:PRK07342 1 NKAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEEEGDKSIVEDAEKTIRDLKDEIDRRQIDAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 118 LNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGV 197
Cdd:PRK07342 81 LSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESGV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 198 HRLVRISPFDSAKRRHTSFCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQR 277
Cdd:PRK07342 161 HRLVRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQER 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 278 SQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSYVFHPYSMVKDHRTNYETGNVQAVMDGDLDGFI 357
Cdd:PRK07342 241 SQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDIGWGHQIRSYVLQPYQLVKDLRTGVESTNPQDVLDGDLNEFM 320
|
....*....
gi 1423225808 358 DAYLKQRLS 366
Cdd:PRK07342 321 EAALAHRIS 329
|
|
| PRK08787 |
PRK08787 |
peptide chain release factor 2; Provisional |
76-366 |
1.41e-115 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 136970 [Multi-domain] Cd Length: 313 Bit Score: 338.17 E-value: 1.41e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 76 LDELTVMFELQQEEYDAEIQEELEERIHLLQERLTTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWA 155
Cdd:PRK08787 16 LADAGELLDLAESEQDEDTALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 156 ESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSVDVMPELDDTIEIAINP 235
Cdd:PRK08787 96 ESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 236 DDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQME 315
Cdd:PRK08787 176 ADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEVQKRNAEKDALEATKSD 255
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1423225808 316 IGWGSQIRSYVFHPySMVKDHRTNYETGNVQAVMDGDLDGFIDAYLKQRLS 366
Cdd:PRK08787 256 IGWGSQIRNYVLDQ-SRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGLA 305
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
26-359 |
4.93e-115 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 338.21 E-value: 4.93e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 26 LDQLEEDIAEAENRMGEPGFWDNTETAQKLINETNSLKE---KYQQFHQLSEELDELTvmfELQQEEYDAEIQEELEERI 102
Cdd:PRK00591 8 LEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPiveAYREYKQAQEDLEEAK---EMLEEESDPEMREMAKEEL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 103 HLLQERLTTYE----LSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSV 178
Cdd:PRK00591 85 KELEERLEELEeelkILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 179 TLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSVDVMPELDDtIEIAINPDDLKIDTYRASGAGGQHINKTES 258
Cdd:PRK00591 165 IAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEE-VEVEINPKDLRIDTFRSSGAGGQHVNTTDS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 259 AVRITHIPTGTVVASQAQRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQmeIGWGS---QIRSYVFhPYSMVKD 335
Cdd:PRK00591 244 AVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQ--VGSGDrseRIRTYNF-PQGRVTD 320
|
330 340
....*....|....*....|....
gi 1423225808 336 HRTNYETGNVQAVMDGDLDGFIDA 359
Cdd:PRK00591 321 HRINLTLYKLDEVMEGDLDELIDA 344
|
|
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
26-359 |
2.01e-111 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 328.88 E-value: 2.01e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 26 LDQLEEDIAEAENRMGEPGFWDNTETAQKLINETNSLK---EKYQQFHQLSEELDELTvmfELQQEEYDAEIQEELEERI 102
Cdd:COG0216 6 LEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEpivEAYREYKKLLEDIEEAK---ELLEEESDPEMREMAKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 103 HLLQERLTTYE----LSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSV 178
Cdd:COG0216 83 EELEARLEELEeelkILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERKGWKVEILSASEGELGGYKEV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 179 TLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSVDVMPELDDtIEIAINPDDLKIDTYRASGAGGQHINKTES 258
Cdd:COG0216 163 IFRISGEGVYSRLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEE-VDVEINPKDLRIDTFRSSGAGGQHVNTTDS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 259 AVRITHIPTGTVVASQAQRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQmeIGWG--SQ-IRSYVFhPYSMVKD 335
Cdd:COG0216 242 AVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYEAEQQKQQAEIAAERKSQ--VGSGdrSErIRTYNF-PQGRVTD 318
|
330 340
....*....|....*....|....
gi 1423225808 336 HRTNYETGNVQAVMDGDLDGFIDA 359
Cdd:COG0216 319 HRINLTLYKLDEVMEGDLDELIDA 342
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
29-219 |
8.41e-77 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 234.58 E-value: 8.41e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 29 LEEDIAEAENRMGEPGFWDNTETAQKLINETNSLK---EKYQQFHQLSEELDELTVMF------ELQQEEYdaeiqEELE 99
Cdd:pfam03462 1 LEERYEELEALLSDPDVWDDQKRAQKLSKEYSELEpivEAYREYKQALEDLEEAKELLedpelaELAEEEL-----EELE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 100 ERIHLLQERLttyELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSVT 179
Cdd:pfam03462 76 KRLEELEEEL---KLLLLPKDPNDDKNAILEIRAGAGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEAT 152
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1423225808 180 LLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFCSV 219
Cdd:pfam03462 153 FEISGEGAYGRLKFESGVHRVQRVPPTESQGRIHTSFATV 192
|
|
| RF-1 |
pfam00472 |
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and ... |
227-337 |
5.71e-67 |
|
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Pssm-ID: 459823 [Multi-domain] Cd Length: 111 Bit Score: 206.51 E-value: 5.71e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 227 DTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQLKNREQAMSMLKAKLYQLEMEKKAQEA 306
Cdd:pfam00472 1 DEIEIEIDPKDLRIDTFRSSGAGGQHVNKTDSAVRLTHIPTGIVVKCQDERSQHQNREKALKRLRARLYELEEEKEEEKK 80
|
90 100 110
....*....|....*....|....*....|.
gi 1423225808 307 ASLRGEQMEIGWGSQIRSYVFHPYSMVKDHR 337
Cdd:pfam00472 81 RRIKSQVGSGDRSEQIRTYNFKPQSRVKDHR 111
|
|
| PrfB |
COG1186 |
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein ... |
230-352 |
3.23e-52 |
|
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein chain release factor PrfB is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 440799 [Multi-domain] Cd Length: 140 Bit Score: 169.93 E-value: 3.23e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 230 EIAINPDDLKIDTYRASGAGGQHINKTESAVRITH------------IPTGTVVASQAQRSQLKNREQAMSMLKAKLYQL 297
Cdd:COG1186 20 EIEIPESDLRIDTYRASGAGGQNVNKVSSAVRLTHdiassslpdsrlTPGGIVVKAQEERSQHQNREDALKRLKALLYEA 99
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1423225808 298 EMEKKAQEA-ASLRGEQMEIGWGSQIRsyvfhpySMVKDHRTNyetgnvqaVMDGD 352
Cdd:COG1186 100 ELEPKERRAtKPTRGSKKRRLWGKQIR-------SMVKDLRGN--------VDDGD 140
|
|
| PCRF |
smart00937 |
This domain is found in peptide chain release factors; |
84-194 |
1.04e-45 |
|
This domain is found in peptide chain release factors;
Pssm-ID: 214923 [Multi-domain] Cd Length: 116 Bit Score: 152.23 E-value: 1.04e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 84 ELQQEEYDAEIQEELEERIHLLQ----ERLTTYELSLLLN-EPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAESH 158
Cdd:smart00937 1 ELLEEEEDDEMRELAEEELEELEaeleEELEELLKLLLLPkDPNDDKNAILEIRAGAGGDEAALFAGDLLRMYLRYAERK 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 1423225808 159 GFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSE 194
Cdd:smart00937 81 GWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
|
|
| release_prfH |
TIGR03072 |
putative peptide chain release factor H; Members of this protein family are bacterial proteins ... |
128-325 |
2.51e-30 |
|
putative peptide chain release factor H; Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon. [Protein synthesis, Translation factors]
Pssm-ID: 213768 Cd Length: 200 Bit Score: 114.87 E-value: 2.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 128 LIELHPGAGGTESQDWGSMLLRMYTRWAESHGFQVETLDYQAGDEAG-IKSVTLLIKGYNAYGYLKSEKGVHRLVRISPF 206
Cdd:TIGR03072 2 LLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGtLRSALVSLDGEAAAALADRWEGTLLWICPSPY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 207 DSAKRRHTSFCSVDVMPELDDTieiaiNPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQRSQLKNREQA 286
Cdd:TIGR03072 82 RPHHRRKNWFIGVQRFSASEEA-----TEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLA 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 1423225808 287 MSMLKAKLYQLEMEKKAQEAASLRGEQMEIGWGSQIRSY 325
Cdd:TIGR03072 157 TLLLAVRLADLQQEQAAALRAERRTAHHQIERGNPVRVF 195
|
|
| PRK09256 |
PRK09256 |
aminoacyl-tRNA hydrolase; |
228-292 |
1.94e-10 |
|
aminoacyl-tRNA hydrolase;
Pssm-ID: 181730 [Multi-domain] Cd Length: 138 Bit Score: 58.24 E-value: 1.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1423225808 228 TIEIAINPDDLKIDTYRASGAGGQHINKTESAV-------------------------RIThiPTGT-VVASQAQRSQLK 281
Cdd:PRK09256 5 TRRLVIPENELEWRFIRASGPGGQNVNKVSTAVelrfdiaasslpefykerllalaghRIT--KDGViVIKAQEFRSQER 82
|
90
....*....|.
gi 1423225808 282 NREQAMSMLKA 292
Cdd:PRK09256 83 NREDALERLVA 93
|
|
| Med9 |
pfam07544 |
RNA polymerase II transcription mediator complex subunit 9; This family of Med9 proteins is ... |
47-112 |
2.81e-03 |
|
RNA polymerase II transcription mediator complex subunit 9; This family of Med9 proteins is conserved in yeasts. It forms part of the middle region of Mediator. Med9 has two functional domains. The species-specific amino-terminal half (aa 1-63) plays a regulatory role in transcriptional regulation, whereas this well-conserved carboxy-terminal half (aa 64-149) has a more fundamental function involved in direct binding to the amino-terminal portions of Med4 and Med7 and the assembly of Med9 into the Middle module. Also, some unidentified factor(s) in med9 extracts may impact the binding of TFIID to the promoter.
Pssm-ID: 462202 Cd Length: 80 Bit Score: 36.40 E-value: 2.81e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1423225808 47 DNTETAQKLINETNSLKEKYQQFHQLSEELDELtvmfELQQEEYDAEIqEELEERIHLLQERLTTY 112
Cdd:pfam07544 16 DPNLSSKDLDTATGELRHKLQKARALIRELPGI----DRSVEEQEAEI-ENLEQQLARKRELLKKY 76
|
|
| |
