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Conserved domains on  [gi|1424287301|ref|WP_112555501|]
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MULTISPECIES: iron ABC transporter permease [Agrobacterium]

Protein Classification

ABC transporter permease( domain architecture ID 11439550)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
32-610 4.48e-107

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 333.28  E-value: 4.48e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  32 KVALREPTTLIGVLTALLFTYLIVVPIISIILDAVRVQFGHERRLgkdvgdltlyyldraffspVASDLFWRPLFNTLTV 111
Cdd:COG1178     2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWAL-------------------LSDPYLWRALGNTLLL 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 112 AFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQpGWFEAIGLTPPDWvaYGR 191
Cdd:COG1178    63 ALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNT-LLRALFGLEPPDI--YGL 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 192 FPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFGVPYVLGl 271
Cdd:COG1178   140 GGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLG- 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 272 pVKFEVLSTSLFRSIASRQTGVAGVVAASIMLIGIITLMIDARLVREARRFVTIGSKGSMNRQSRLGKMRLLATGFAAAI 351
Cdd:COG1178   219 -GGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCLLL 297

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 352 FVLSVGLPLLTLALSTVMKMPArftfDNFTLDYWIGsnlntvalqtgVLLSPDLWAAAKNTMMIVGLASLTSGILGLLVG 431
Cdd:COG1178   298 VLLGLLLPLLALLLWSLTKALD----DNLTLDNYRF-----------VLLDPSLLRALLNSLLLALLAALLAVLLALLLA 362

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 432 YVVIRTPVRaLSVYLRQVTFLPYLVPGIAFAAAYLSLFAVPRGPMpaLYGTVTILILALIADQMPYASRAGISAMTQLGK 511
Cdd:COG1178   363 YLVRRRRGR-LARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLL--LYGTLAILVLAYVVRFLPFALRSLEAALAQIDP 439

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 512 DPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLFVILAVPSTDVLTTYSLRLVDYHYTQAANAVVLI 591
Cdd:COG1178   440 SLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALL 519

                         570
                  ....*....|....*....
gi 1424287301 592 IAAIAYFGTLLAQKLTRTN 610
Cdd:COG1178   520 LVLVSLLPVLLLERLLGRR 538
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
32-610 4.48e-107

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 333.28  E-value: 4.48e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  32 KVALREPTTLIGVLTALLFTYLIVVPIISIILDAVRVQFGHERRLgkdvgdltlyyldraffspVASDLFWRPLFNTLTV 111
Cdd:COG1178     2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWAL-------------------LSDPYLWRALGNTLLL 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 112 AFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQpGWFEAIGLTPPDWvaYGR 191
Cdd:COG1178    63 ALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNT-LLRALFGLEPPDI--YGL 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 192 FPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFGVPYVLGl 271
Cdd:COG1178   140 GGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLG- 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 272 pVKFEVLSTSLFRSIASRQTGVAGVVAASIMLIGIITLMIDARLVREARRFVTIGSKGSMNRQSRLGKMRLLATGFAAAI 351
Cdd:COG1178   219 -GGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCLLL 297

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 352 FVLSVGLPLLTLALSTVMKMPArftfDNFTLDYWIGsnlntvalqtgVLLSPDLWAAAKNTMMIVGLASLTSGILGLLVG 431
Cdd:COG1178   298 VLLGLLLPLLALLLWSLTKALD----DNLTLDNYRF-----------VLLDPSLLRALLNSLLLALLAALLAVLLALLLA 362

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 432 YVVIRTPVRaLSVYLRQVTFLPYLVPGIAFAAAYLSLFAVPRGPMpaLYGTVTILILALIADQMPYASRAGISAMTQLGK 511
Cdd:COG1178   363 YLVRRRRGR-LARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLL--LYGTLAILVLAYVVRFLPFALRSLEAALAQIDP 439

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 512 DPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLFVILAVPSTDVLTTYSLRLVDYHYTQAANAVVLI 591
Cdd:COG1178   440 SLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALL 519

                         570
                  ....*....|....*....
gi 1424287301 592 IAAIAYFGTLLAQKLTRTN 610
Cdd:COG1178   520 LVLVSLLPVLLLERLLGRR 538
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 96-608 2.62e-32

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 131.34  E-value: 2.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  96 VASDLFWRPLFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRtvGGQPGW 175
Cdd:TIGR03262  47 FATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQ--GLLKGL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 176 FEAIGLtppdwvaYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLI 255
Cdd:TIGR03262 125 LGGFSI-------YGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVV 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 256 FAKCLGEFGVPYVLGlpVKFEVLSTSLFRSIASRQTGVAGVVAASIMLI-GIITLMIDARLVREARRFVTIGSKGSMNRQ 334
Cdd:TIGR03262 198 FTLVITDFGVPKVIG--GDYNVLATDIYKQVIGQQNFPMGAVVGVLLLLpALLAFGIDRAIQRRQRAQLSSRSVPYQPKP 275

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 335 SRLGKMRLLATGFAAAIFVLSVGLPLLTLALSTVMKMPARFTFDNFTLDywigsnlntvalqtgvLLSPDLWAAAKNTMM 414
Cdd:TIGR03262 276 NRVRDAACLVYCAIISAALLAVVGMAVYASLVKFWPYNLSLTLKHYNFD----------------LMDGGGWEAYKNSLR 339

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 415 IVGLASLTSGILGLLVGYVVIRTP-VRALSVYLRQVTFLPYLVPGIAFAAAYLSLFAVPRGPMPALYGTVTILILALIAD 493
Cdd:TIGR03262 340 LAATTALIGTILVFGGAYLIEKTRgFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPTNPLNGLYGTMALLVLCTVVH 419

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 494 QMPYASRAGISAMTQLGKDPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLFVILAVPSTDVLTTYS 573
Cdd:TIGR03262 420 FYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPDTKLASVAI 499

                         490       500       510
                  ....*....|....*....|....*....|....*
gi 1424287301 574 LRLVDYHYTQAANAVVLIIAAIAYFGTLLAQKLTR 608
Cdd:TIGR03262 500 LNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASR 534
cysT CHL00187
sulfate transport protein; Provisional
 108-264 4.77e-14

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 71.97  E-value: 4.77e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 108 TLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQpgWFEAIGLTppdwV 187
Cdd:CHL00187   60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGH--LLSHLGIQ----I 133

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424287301 188 AYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFG 264
Cdd:CHL00187  134 VFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYG 210
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 105-309 4.96e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.77  E-value: 4.96e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 105 LFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNrtvggqpgwfeaigLTPP 184
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGV--------------LLGW 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 185 DWVAYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFG 264
Cdd:cd06261    67 GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1424287301 265 VPYVLGLPVKFeVLSTSLFRSIASRQTGVAGVVAASIMLIGIITL 309
Cdd:cd06261   147 LVSFLGGGEAP-GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 185-316 1.05e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 185 DWVAYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFG 264
Cdd:pfam00528  46 SILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAV 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1424287301 265 VPYVLGLPVKFEVLSTSLFRSIASRQTGVAGVVAASIMLIGIITLMIDARLV 316
Cdd:pfam00528 126 LLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
32-610 4.48e-107

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 333.28  E-value: 4.48e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  32 KVALREPTTLIGVLTALLFTYLIVVPIISIILDAVRVQFGHERRLgkdvgdltlyyldraffspVASDLFWRPLFNTLTV 111
Cdd:COG1178     2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWAL-------------------LSDPYLWRALGNTLLL 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 112 AFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQpGWFEAIGLTPPDWvaYGR 191
Cdd:COG1178    63 ALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNT-LLRALFGLEPPDI--YGL 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 192 FPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFGVPYVLGl 271
Cdd:COG1178   140 GGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLG- 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 272 pVKFEVLSTSLFRSIASRQTGVAGVVAASIMLIGIITLMIDARLVREARRFVTIGSKGSMNRQSRLGKMRLLATGFAAAI 351
Cdd:COG1178   219 -GGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCLLL 297

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 352 FVLSVGLPLLTLALSTVMKMPArftfDNFTLDYWIGsnlntvalqtgVLLSPDLWAAAKNTMMIVGLASLTSGILGLLVG 431
Cdd:COG1178   298 VLLGLLLPLLALLLWSLTKALD----DNLTLDNYRF-----------VLLDPSLLRALLNSLLLALLAALLAVLLALLLA 362

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 432 YVVIRTPVRaLSVYLRQVTFLPYLVPGIAFAAAYLSLFAVPRGPMpaLYGTVTILILALIADQMPYASRAGISAMTQLGK 511
Cdd:COG1178   363 YLVRRRRGR-LARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLL--LYGTLAILVLAYVVRFLPFALRSLEAALAQIDP 439

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 512 DPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLFVILAVPSTDVLTTYSLRLVDYHYTQAANAVVLI 591
Cdd:COG1178   440 SLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALL 519

                         570
                  ....*....|....*....
gi 1424287301 592 IAAIAYFGTLLAQKLTRTN 610
Cdd:COG1178   520 LVLVSLLPVLLLERLLGRR 538
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 96-608 2.62e-32

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 131.34  E-value: 2.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  96 VASDLFWRPLFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRtvGGQPGW 175
Cdd:TIGR03262  47 FATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQ--GLLKGL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 176 FEAIGLtppdwvaYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLI 255
Cdd:TIGR03262 125 LGGFSI-------YGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVV 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 256 FAKCLGEFGVPYVLGlpVKFEVLSTSLFRSIASRQTGVAGVVAASIMLI-GIITLMIDARLVREARRFVTIGSKGSMNRQ 334
Cdd:TIGR03262 198 FTLVITDFGVPKVIG--GDYNVLATDIYKQVIGQQNFPMGAVVGVLLLLpALLAFGIDRAIQRRQRAQLSSRSVPYQPKP 275

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 335 SRLGKMRLLATGFAAAIFVLSVGLPLLTLALSTVMKMPARFTFDNFTLDywigsnlntvalqtgvLLSPDLWAAAKNTMM 414
Cdd:TIGR03262 276 NRVRDAACLVYCAIISAALLAVVGMAVYASLVKFWPYNLSLTLKHYNFD----------------LMDGGGWEAYKNSLR 339

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 415 IVGLASLTSGILGLLVGYVVIRTP-VRALSVYLRQVTFLPYLVPGIAFAAAYLSLFAVPRGPMPALYGTVTILILALIAD 493
Cdd:TIGR03262 340 LAATTALIGTILVFGGAYLIEKTRgFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPTNPLNGLYGTMALLVLCTVVH 419

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 494 QMPYASRAGISAMTQLGKDPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLFVILAVPSTDVLTTYS 573
Cdd:TIGR03262 420 FYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPDTKLASVAI 499

                         490       500       510
                  ....*....|....*....|....*....|....*
gi 1424287301 574 LRLVDYHYTQAANAVVLIIAAIAYFGTLLAQKLTR 608
Cdd:TIGR03262 500 LNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASR 534
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
28-317 6.90e-28

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 117.95  E-value: 6.90e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  28 RYRLKVALREPTTLIGVLTALLFTYLIVVPIISIILDAVRVQFGherrlgkdvGDLTLYYLDRAFFSPVasdlFWRPLFN 107
Cdd:COG1178   276 RRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALD---------DNLTLDNYRFVLLDPS----LLRALLN 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 108 TLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFknrtvggqpgwfeaigLTPPDWV 187
Cdd:COG1178   343 SLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLF----------------NRPLPLL 406

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 188 AYGRFPITII-LALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFGVP 266
Cdd:COG1178   407 LYGTLAILVLaYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSAT 486

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1424287301 267 YVLGlPVKFEVLSTSLFRSIASRQTGVAGVVAASIMLIGIITLMIDARLVR 317
Cdd:COG1178   487 LLLR-PPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLG 536
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 41-321 1.24e-27

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 112.13  E-value: 1.24e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  41 LIGVLTALLFTYLIVvPIISIILDAvrvqFGHERRLGKDVGDLTLYYLDRAFfspvASDLFWRPLFNTLTVAFGAIALSL 120
Cdd:COG1177     8 LLRLFLALVLLFLYL-PILVLVLYS----FNDSWFLTFPPEGFTLRWYAELF----SDPRLLDALLNSLLIALLSTLLAT 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 121 VIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFknRTVGGQPGWFeaigltppdwvaygrfpiTIILA- 199
Cdd:COG1177    79 VLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLF--SALGLSGGLW------------------GLILAh 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 200 -LHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFGVPYVLGLPvKFEVL 278
Cdd:COG1177   139 vVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGP-GVTTL 217

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1424287301 279 STSLFRSIASRQTGVAGVVAASIMLIGIITLMIDARLVREARR 321
Cdd:COG1177   218 PVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGER 260
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 45-321 1.04e-25

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 106.76  E-value: 1.04e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  45 LTALLFTYLIVVPIISIILDAVRVQFGherrlgkdvgdltlyyldrAFFSPVASDLFWRPLFNTLTVAFGAIALSLVIGT 124
Cdd:COG0555    15 LTLLYLSLIVLLPLAALVLKAAGLGWA-------------------EFWAVLTSPRVLAALKLSLGTALIAALINLVFGL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 125 VLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQpgWFEAIGLTppdwVAYGRFPITIILALHYTP 204
Cdd:COG0555    76 PLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQ--LLAPLGIK----VAFTPLGIVLAQTFVSLP 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 205 FVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFG-VPYVLG-LPVKFEVLSTSL 282
Cdd:COG0555   150 FVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGaVIFIAGnLPMKTEILPLLI 229

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1424287301 283 FRSIASRQTGVAGVVAASIMLIGIITLMIDARLVREARR 321
Cdd:COG0555   230 YLKLEEGDYAGATAIALVLLLISFLLLLLINLLQRRSRR 268
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 47-321 3.32e-24

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 102.92  E-value: 3.32e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  47 ALLFTYLIVVPIISIildaVRVQFGHERRLGKDVGDLTLYYLDRAFFSPvasdLFWRPLFNTLTVAFGAIALSLVIGTVL 126
Cdd:COG1176    19 LLWLLLFFVLPLLLL----LVYSFTTRDPYGGVVPGFTLENYARLFTDP----LYLKVLLRTLWIALLTTLICLLLGYPI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 127 AWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRtvGGQPGWFEAIGLT-PPDWVAYGRFPITIILALHYTPF 205
Cdd:COG1176    91 AYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN--GLLNSLLLALGLIdEPLRLLYTEFAVVIGLVYVYLPF 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 206 VILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFGVPYVLGlPVKFEVLSTSLFRS 285
Cdd:COG1176   169 MVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLG-GGKVLMIGNLIYQQ 247

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1424287301 286 I-ASRQTGVAGVVAASIMLIGIITLMIDARLVREARR 321
Cdd:COG1176   248 FlSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRL 284
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 98-321 4.85e-24

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 100.51  E-value: 4.85e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  98 SDLFWRPLFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLP--AWTFALAWttLFKNRTVGGQPgW 175
Cdd:COG4149     2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPptVLGFYLLL--LFGRNGPLGQL-L 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 176 FEAIGLTPP-DWVAygrfpiTIILALHYT-PFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMV 253
Cdd:COG4149    79 EELFGISLVfTWTG------AVLASVVVSlPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAV 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 254 LIFAKCLGEFGVPYVLG--LPVKFEVLSTSLFRSIASRQTGVAGVVAASIMLIGIITLMIDARLVREARR 321
Cdd:COG4149   153 LAFARALGEFGATLMFAgnIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRRR 222
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
97-318 1.38e-23

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 101.36  E-value: 1.38e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  97 ASDLFWRPLFNTLTVAFGAIALSLVIGTVLAWLISRtDMFGRRWFATALIVPYMLPAWTFALAWTTLFkNRTVGGQPGWF 176
Cdd:COG1175    70 TDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLF-NPDYGLLNALL 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 177 EAIGLTPPDWVA---YGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMV 253
Cdd:COG1175   148 GALGLEPINWLGdpsLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLV 227

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1424287301 254 LIFAKCLGEFGVPYVL--GLPVK-FEVLSTSLFR-SIASRQTGVAGVVAASIMLIGIITLMIDARLVRE 318
Cdd:COG1175   228 LSTIGALQVFDLVYVLtgGGPGNsTTTLVLYIYQtAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRR 296
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 336-608 4.56e-18

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 84.39  E-value: 4.56e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 336 RLGKMRLLATGFAAAIFVLsVGLPLLTLAL-----STVMKMParftFDNFTLDYWigsnlntvalqTGVLLSPDLWAAAK 410
Cdd:COG1177     1 SSRLGRLLLRLFLALVLLF-LYLPILVLVLysfndSWFLTFP----PEGFTLRWY-----------AELFSDPRLLDALL 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 411 NTMMIVGLASLTSGILGLLVGYVVIRTPVRaLSVYLRQVTFLPYLVPGIAFAAAYLSLFAvprgpMPALYGTVTILILAL 490
Cdd:COG1177    65 NSLLIALLSTLLATVLGTPAALALARYRFR-GRRLLLALLLLPLVVPGIVLGVALLLLFS-----ALGLSGGLWGLILAH 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 491 IADQMPYASRAGISAMTQLGKDPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFIsgikgLSL--FVI---LAVPS 565
Cdd:COG1177   139 VVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFT-----LSFdeFVItlfLAGPG 213

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1424287301 566 TDVLTTYSLRLVDYHYTQAANAVVLIIAAIAYFGTLLAQKLTR 608
Cdd:COG1177   214 VTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRR 256
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 108-309 1.43e-16

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 78.82  E-value: 1.43e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 108 TLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQpgWFEAIGLTppdwV 187
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGK--LLELFGIS----L 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 188 AYgRFPITIILALHYT-PFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFGVP 266
Cdd:TIGR02141  77 VF-TFTGAVLASVIVSfPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGAT 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1424287301 267 YVLG--LPVKFEVLSTSLFRSIASRqTGVAGVVAASIMLIGIITL 309
Cdd:TIGR02141 156 LMFAgnIPGETQTIPLAIYDAVESD-YELAHQLSLVLLAISLIVL 199
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 101-304 2.94e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 73.59  E-value: 2.94e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 101 FWRPLFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNrtvggqpgwfeaIG 180
Cdd:COG0395    72 FGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQ------------LG 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 181 LTPPdwvaygRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCL 260
Cdd:COG0395   140 LLNT------YWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAW 213

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1424287301 261 GEFGVPYVLGLPVKFEVLSTSLFRSIASRQTGVAGVVAASIMLI 304
Cdd:COG0395   214 NDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLMAAAVIAT 257
cysT CHL00187
sulfate transport protein; Provisional
 108-264 4.77e-14

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 71.97  E-value: 4.77e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 108 TLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQpgWFEAIGLTppdwV 187
Cdd:CHL00187   60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGH--LLSHLGIQ----I 133

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424287301 188 AYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFG 264
Cdd:CHL00187  134 VFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYG 210
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
108-309 4.95e-14

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 72.86  E-value: 4.95e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 108 TLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKnrTVGGQPGWFEAIGLTppdwV 187
Cdd:PRK10971   63 TLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFS--VNGWYGEWLAKFDIK----V 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 188 AYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFG-VP 266
Cdd:PRK10971  137 TYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGaVI 216

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1424287301 267 YVLG-LPVKFEVLSTSLFRSIASRQTGVAGVVAASIMLIGIITL 309
Cdd:PRK10971  217 FIAGnIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLL 260
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 105-309 4.96e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.77  E-value: 4.96e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 105 LFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNrtvggqpgwfeaigLTPP 184
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGV--------------LLGW 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 185 DWVAYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFG 264
Cdd:cd06261    67 GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1424287301 265 VPYVLGLPVKFeVLSTSLFRSIASRQTGVAGVVAASIMLIGIITL 309
Cdd:cd06261   147 LVSFLGGGEAP-GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 108-311 1.40e-13

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 70.50  E-value: 1.40e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 108 TLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQpgWFEAIGLTppdwV 187
Cdd:TIGR01581  26 SLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGP--YLEAAGIQ----V 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 188 AYGrfPITIILALHY--TPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFGV 265
Cdd:TIGR01581 100 IFS--TLGVVLAQTFvaSPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGA 177

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1424287301 266 PYVL--GLPVKFEVLSTSLFRSIASrqTGVAGVVAASIMLIGIITLMI 311
Cdd:TIGR01581 178 TLMFagSIQGKTRTLPLAIYLNIQS--DNIEAAVASALLLLVIAFLLL 223
modB PRK09421
molybdate ABC transporter permease subunit;
98-321 7.57e-12

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 65.33  E-value: 7.57e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  98 SDLFWRPLFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQPGWfE 177
Cdd:PRK09421    4 SDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLY-E 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 178 AIGLTPP-DWvaYGRFPITIILALhytPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIF 256
Cdd:PRK09421   83 WFGISFAfSW--RGAALAAAVMAF---PLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAF 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1424287301 257 AKCLGEFG--VPYVLGLPVKFEVLSTSLFRSIasrQTGVAGVVAASIMLIGII----TLMIDARLVREARR 321
Cdd:PRK09421  158 ARSLGEFGatITFVSNIPGETQTIPSAMYTLI---QTPGGESAAARLCIISIAialaSLLLSEWLARRSRK 225
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 91-270 3.23e-10

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 61.56  E-value: 3.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  91 AFFSPVASDLFWRPLFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKnrTVG 170
Cdd:PRK15050   61 TYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYG--SAG 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 171 G-QPGWFEAIGL-TPPDWVAYGrfPITIILA--LHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRP 246
Cdd:PRK15050  139 SvNIALQRLFGLeAPPLDFLYS--PGGVILAeiTFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWP 216

                         170       180
                  ....*....|....*....|....
gi 1424287301 247 ALLSSMVLIFAKCLGEFGVPYVLG 270
Cdd:PRK15050  217 ALAAGGSLCLLLTLNEFGIVLFTG 240
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
1-321 3.87e-09

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 58.22  E-value: 3.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301   1 MALLSESTKAEAlgsppttAPSAWQAWryrlkvalreptTLIGvLTALLFTYLIVVPIISIILDAvrvqfgherrLGKDV 80
Cdd:PRK11602    1 MAEVTQLKRYDR-------PPINWGKW------------FLIG-IGMLVSAFILVVPMIYIFVQA----------FSKGL 50

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  81 GDLTLYYLDraffspvaSDLFwRPLFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAW 160
Cdd:PRK11602   51 MPVLQNLAD--------PDML-HAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVY 121

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 161 TTLFKnrTVGGQPGWFEAIGLTppdwVAYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVI 240
Cdd:PRK11602  122 LLFYG--SNGPLGGWLDEHNLQ----LMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVT 195

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 241 LPLMRPALLSSMVLIFAKCLGEFGVPYVLGLPVKFEVLSTSLFRSIASRQTGVAG--VVAASIMLIGIITLMIDA----R 314
Cdd:PRK11602  196 LPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGsfTAAALLTLMAIITLFLKSmlqwR 275


                  ....*..
gi 1424287301 315 LVREARR 321
Cdd:PRK11602  276 LENQEKR 282
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
348-608 5.98e-09

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 57.84  E-value: 5.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 348 AAAIFVLSVGLPLL-TLALS----TVMKMPARFT-FDNFTldywigsnlntvalqtGVLLSPDLWAAAKNTMMIVGLASL 421
Cdd:COG1175    27 ALLLLLVFVLYPLLyTLYLSftdwNLLGPPPEFVgLDNYA----------------RLFTDPRFWNALGNTLLFTVVSVP 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 422 TSGILGLLVGyVVIRTPVRALSVYlRQVTFLPYLVPGIAFAAAYLSLFAVPRGPMPALYGTVTI---------------L 486
Cdd:COG1175    91 LQLVLGLLLA-LLLNRKLRGRGFF-RTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLepinwlgdpslalpaV 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 487 ILALIADQMPYASRAGISAMTQLGKDPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLFVILA---- 562
Cdd:COG1175   169 IIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTgggp 248

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1424287301 563 VPSTDVLTTYSLRL--VDYHYTQAAnAVVLIIAAIAYFGTLLAQKLTR 608
Cdd:COG1175   249 GNSTTTLVLYIYQTafQQFDFGYAS-AIAVVLFLIILVLTLLQLRLLR 295
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 331-614 7.10e-08

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 54.38  E-value: 7.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 331 MNRQSRLGKMRLLATGFAAAIFVLSVGLPLLTLALSTVMKMPARFTFDN-FTLDYWIGsnlntvalqtgVLLSPDLWAAA 409
Cdd:COG1176     1 MSAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPgFTLENYAR-----------LFTDPLYLKVL 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 410 KNTMMIVGLASLTSGILGLLVGYVVIRTPVRALSVYLRQVTfLPYLVPGI--AFA-----------AAYLSLFAVPRGPM 476
Cdd:COG1176    70 LRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVI-LPFWTSFLvrTYAwivllgrngllNSLLLALGLIDEPL 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 477 PALYgTVTILILALIADQMPYASRAGISAMTQLGKDPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFISgikGLS 556
Cdd:COG1176   149 RLLY-TEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIP---ALG 224

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1424287301 557 LFVI---LAVPSTDVLTT--YSLRLVDYHYTQA-ANAVVLIIAAIAYfgTLLAQKLTRTNLAEG 614
Cdd:COG1176   225 AFVTpalLGGGKVLMIGNliYQQFLSALNWPLAaALAVVLLLIVLLV--LLLYLRLLRRRRLLG 286
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 108-310 1.03e-07

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 53.95  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 108 TLTVAFGAIALSLVIGTVLAWLISRTDMFGRrwfaTALIVPYMLPAWTFAL----AWTTLFKNRTVGGQPGWFEAIgLTP 183
Cdd:PRK10683  102 SLQVAAISTLCCLLIGYPLAWAVAHSKPSTR----NILLLLVILPSWTSFLirvyAWMGILKNNGVLNNFLLWLGV-IDQ 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 184 PDWVAYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEF 263
Cdd:PRK10683  177 PLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEF 256

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1424287301 264 GVPYVLGLPVKF---EVLSTSLFRsiaSRQTGVAGVVAASIMLIGIITLM 310
Cdd:PRK10683  257 VIPELLGGPDSImigRVLWQEFFN---NRDWPVASAVAIIMLLLLIVPIM 303
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 409-593 2.14e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 51.51  E-value: 2.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 409 AKNTMMIVGLASLTSGILGLLVGYVVIRTPVRALSVYLRqVTFLPYLVPGIAFAAAYLSLFAVPRGPMPALYGTVTILIL 488
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRR-IIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 489 ALIAdQMPYASRAGISAMTQLGKDPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLFVILAVPSTDV 568
Cdd:cd06261    80 ALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG 158

                         170       180
                  ....*....|....*....|....*
gi 1424287301 569 LTTYSLRLVDYHYTQAANAVVLIIA 593
Cdd:cd06261   159 PGTGLLLIFAILFPGDLGVAAAVAL 183
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 331-550 6.75e-07

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 51.25  E-value: 6.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 331 MNRQSRLGKMRL--LATGFAAAIFVLSVGLPLLTLALS------TVMKMPARFTFDNFTLDYWigsnlntvalqTGVLLS 402
Cdd:COG0395     1 MSATARRRRRRLgrILLYLLLILLALLFLFPLYWMVVTsfkppaEIFSGPPSLLPSEFTLENY-----------RAAFTD 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 403 PDLWAAAKNTMMIVGLASLTSGILGLLVGYVVIRTPVRALSVYLRQVTFLpYLVPGIAFAAAYLSLFAVPRgpmpaLYGT 482
Cdd:COG0395    70 GPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILAT-LMIPGQVLLIPLYLLFRQLG-----LLNT 143

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424287301 483 VTILILALIADQMPYasraGI----SAMTQLGKDPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFIS 550
Cdd:COG0395   144 YWGLILPYLAFGLPF----GIfllrQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIG 211
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 106-321 8.98e-07

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 50.75  E-value: 8.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 106 FNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTLFKnrTVGGQPGWFeaigltppd 185
Cdd:PRK09500   60 QHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFM--LLGIQLGFW--------- 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 186 wvaygrfpiTIILAlHYT---PFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGE 262
Cdd:PRK09500  129 ---------SLLFA-HITfclPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDD 198

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1424287301 263 FGVP-YVLGlpVKFEVLSTSLFRSIasrQTGVAGVVAA--SIMLIGIITLMIDARLVREARR 321
Cdd:PRK09500  199 VVVSsFVTG--PSYEILPLKIYSMV---KVGVSPEVNAlaTILLVLSLVLVILSQLLARDKT 255
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 101-461 1.04e-06

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 51.80  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 101 FWRPLFNTLTVAFGAIALSLVIgtVLAWLISrtdMFGRRWFA--TALIVPYM-LPAWTFALAWTTLFK-----NRTVGGQ 172
Cdd:COG4135    58 LGRSILLSLFTGLAATLLALLL--ALLILAA---FYGTRLFRrlERLLSPLLaVPHAAAAIGLAFLIApsgwlARLLSPW 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 173 PGWFEaiglTPPDWV----AYGrFPITIILALHYTPFVILLFGSALRRFDS-QLEDSARILGAHRYQVALQVILPLMRPA 247
Cdd:COG4135   133 LTGWD----RPPDLLlvqdPYG-LSLILGLVLKEVPFLLLMSLAALPQLNVrRSLAVARSLGYGRATAWLKVVLPQLYPQ 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 248 LLSSMVLIFAKCLGEFGVPYVLG--LPVKFEVLSTSLFR--SIASRQTGVAGVVAASIMLIGIITLMidarlvREARRFV 323
Cdd:COG4135   208 IRLPVFAVLAYSLSVVDVALILGptTPPTLAVLIWQWFNdpDLSLRLQAAAGALLQLLLVLAALLLW------RLLERLV 281

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 324 TIGSKGSMNRQSRLGKMRLLAtGFAAAIFVLSVGLPLLTLALSTVMKMPARFTF-----DNFTLDYWIGSnlntvalqtg 398
Cdd:COG4135   282 ARLGRRWLSSGRRGLGDPALR-RLGLALMLLIALLSLLGLALLLLWSFAGRWRFpdalpSSWTLRFWQRA---------- 350

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1424287301 399 vllSPDLWAAAKNTMMIVGLASLTSGILGLLVGYVVIRTPvRALSVYLRQVTFLPYLVPGIAF 461
Cdd:COG4135   351 ---APGLLEPLGNTLLLALASALIALVLVLACLEAEARRG-RRPGRRALWLLYLPLLVPQIAF 409
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 90-252 2.97e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 48.99  E-value: 2.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  90 RAFFSPVASDLFWRPLFNTLTVAFGAIALSLVIGTVLAWLISRTDmFGRRWFATALIVPYMLPAwtfaLAWTTLFknrTV 169
Cdd:COG0600    48 AALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSR-LLRRLLDPLLVFLRPIPP----LALAPLL---IL 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 170 ggqpgwfeaigltppdWVAYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALL 249
Cdd:COG0600   120 ----------------WFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIF 183


                  ...
gi 1424287301 250 SSM 252
Cdd:COG0600   184 TGL 186
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 97-257 1.00e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 48.33  E-value: 1.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  97 ASDLFWRPLFNTLTVAFGAIALSLVIgtVLAWLIS--RTDMFGRRWFATALIVPYMLP--AWTFALAWTTLFknrtVGGQ 172
Cdd:COG4135   350 AAPGLLEPLGNTLLLALASALIALVL--VLACLEAeaRRGRRPGRRALWLLYLPLLVPqiAFLFGLQVLLLR----LGLD 423

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 173 PGWFeaigltppdWVAYGRfpitIILALhytPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSM 252
Cdd:COG4135   424 GTWL---------AVIWAH----LVFVL---PYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAA 487


                  ....*
gi 1424287301 253 VLIFA 257
Cdd:COG4135   488 AVGFA 492
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 185-316 1.05e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.52  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 185 DWVAYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGEFG 264
Cdd:pfam00528  46 SILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAV 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1424287301 265 VPYVLGLPVKFEVLSTSLFRSIASRQTGVAGVVAASIMLIGIITLMIDARLV 316
Cdd:pfam00528 126 LLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 93-270 1.27e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 47.37  E-value: 1.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  93 FSPVASDLFWrplfNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYmlpaWTFALAWTTLFKnrTVGGQ 172
Cdd:PRK09497   57 LDPLYAEVLL----HSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPF----WTNSLIRIYGLK--IFLST 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 173 PGWF----EAIGL-TPPDWVAYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPA 247
Cdd:PRK09497  127 KGYLneflLWLGViDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPG 206

                         170       180
                  ....*....|....*....|...
gi 1424287301 248 LLSSMVLIFAKCLGEFGVPYVLG 270
Cdd:PRK09497  207 IIAGCLLVLLPAMGMFYVSDLLG 229
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 88-303 5.67e-04

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 42.90  E-value: 5.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301  88 LDRAFFSPVASDLFWRPLFNTLTVAFGAIALSLVIGTVLAWLISRTDMFGRRWFATALIVPYMLPAWTFALAWTTlfknr 167
Cdd:PRK09433  304 LNASLLRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAAQALELSGMLILAMPGIVLAT----- 378

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 168 tvggqpGWFeaIGLTPPDWVAYGRFPITIIL-ALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRP 246
Cdd:PRK09433  379 ------GLF--LLLRNTTDLPASALGIVILTnALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRR 450

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1424287301 247 ALLSSMVLIFAKCLGEFGVPYVLGLPvKFEVLSTSLFRSIASRQTGVAGVVAASIML 303
Cdd:PRK09433  451 PLAQAFAFACALSLGDFGVIALFGSQ-DFRTLPFLLYQQLGSYRSQDAAVTALLLLL 506
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 427-606 9.13e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 40.75  E-value: 9.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 427 GLLVGYVVIRTPVRALSVYLRQVTFLPYLVPGIAFAaaylsLFAVPRGPMPALYGTVTILILALIADQMPYASRAGISAM 506
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLA-----ILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAAL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 507 TQLGKDPEEAAQIAGAGWFRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLF-VILAVPSTDVLTTYSLRLVDYHYTQAA 585
Cdd:pfam00528  76 RSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLeFLGSWPGLGLLLIEAILGYDYPEIQGP 155

                         170       180
                  ....*....|....*....|.
gi 1424287301 586 NAVVLIIAAIAYFGTLLAQKL 606
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRL 176
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 108-256 1.35e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 40.99  E-value: 1.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 108 TLTVAFGAIALSLVIGTVLAWLISRTDMF-GRRWFATALIVPYMLPAWTFALAWTTLFKnrTVGGQPGWfeaigltPPDw 186
Cdd:PRK10592   68 SLTIAACAATAAAILGTIAAVVMVRFGRFrGSNGFAFMITAPLVMPDVITGLSLLLLFV--ALAHAIGW-------PAD- 137

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1424287301 187 vaYGRFPITIILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIF 256
Cdd:PRK10592  138 --RGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAF 205
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 196-262 3.12e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 40.07  E-value: 3.12e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1424287301 196 IILALHYTPFVILLFGSALRRFDSQLEDSARILGAHRYQVALQVILPLMRPALLSSMVLIFAKCLGE 262
Cdd:COG0573   161 IVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGE 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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