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Conserved domains on  [gi|1425880960|ref|WP_112908872|]
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porin [Rhizobium leguminosarum]

Protein Classification

porin( domain architecture ID 10495026)

porin, similar to Brucella Omp2a and Omp2b, is a multi-pass trasmembrane protein which forms a pore that allows passive diffusion of small hydrophilic compounds across the outer membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Porin_2 pfam02530
Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria ...
 30-322 1.75e-74

Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.


:

Pssm-ID: 308243  Cd Length: 355  Bit Score: 233.61  E-value: 1.75e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960  30 EPEPVEYVRVCDAYGTGYFYIPGTETCLSISGYIRTEVRFGDHI---------SGDSDVDFWTRGQVTFQAKNDTEYGTL 100
Cdd:pfam02530   7 EPEPVEYVKVCDAYGAGYFYIPGTETCLKIGGYVRADVGFGDNPdnggdgqggRLTSDWDKFSRADLNVDTRTETELGTL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960 101 TGVITLRYNVDNASDQE--------ALLDEGYIDIAGFRVGKLYSWWDDDMSGETDTLASNE-----TTHNSIRYQYENG 167
Cdd:pfam02530  87 RTFFESVFNWTTGSYTGdgsdsnggLGVYFAFIQLGGLRVGKDYSWFDTWLGYEGDVINNSGgpygnTGTNSISYTFDAG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960 168 A-FAAGISVDELEED-----YATKPGEGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAVRGIVYADIGPG-TLGIAG 240
Cdd:pfam02530 167 NgFSAGISLEELEGTrdlgaYGANSYIGSYTPDVVGGVKVKQGWGAFQGVVAYDSDKEEGAVRARLSVKAGDGdSLNIAG 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960 241 VWASGANYYYEESE-------WTIAAEYALKINDKWKITPGFQYfeNIALEADGNGFTGgsaYTTGVTIDYQIVEDLRTK 313
Cdd:pfam02530 247 GYASGANRYTGDSEyhnwggnWAVWAGYTYKATDKTAITPGAQW--GGAGNVCNPDFDG---WAVGANVDYTIVDNLTFT 321


                  ....*....
gi 1425880960 314 LSVQYHDED 322
Cdd:pfam02530 322 AEVRYTDLG 330
 
Name Accession Description Interval E-value
Porin_2 pfam02530
Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria ...
 30-322 1.75e-74

Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.


Pssm-ID: 308243  Cd Length: 355  Bit Score: 233.61  E-value: 1.75e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960  30 EPEPVEYVRVCDAYGTGYFYIPGTETCLSISGYIRTEVRFGDHI---------SGDSDVDFWTRGQVTFQAKNDTEYGTL 100
Cdd:pfam02530   7 EPEPVEYVKVCDAYGAGYFYIPGTETCLKIGGYVRADVGFGDNPdnggdgqggRLTSDWDKFSRADLNVDTRTETELGTL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960 101 TGVITLRYNVDNASDQE--------ALLDEGYIDIAGFRVGKLYSWWDDDMSGETDTLASNE-----TTHNSIRYQYENG 167
Cdd:pfam02530  87 RTFFESVFNWTTGSYTGdgsdsnggLGVYFAFIQLGGLRVGKDYSWFDTWLGYEGDVINNSGgpygnTGTNSISYTFDAG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960 168 A-FAAGISVDELEED-----YATKPGEGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAVRGIVYADIGPG-TLGIAG 240
Cdd:pfam02530 167 NgFSAGISLEELEGTrdlgaYGANSYIGSYTPDVVGGVKVKQGWGAFQGVVAYDSDKEEGAVRARLSVKAGDGdSLNIAG 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960 241 VWASGANYYYEESE-------WTIAAEYALKINDKWKITPGFQYfeNIALEADGNGFTGgsaYTTGVTIDYQIVEDLRTK 313
Cdd:pfam02530 247 GYASGANRYTGDSEyhnwggnWAVWAGYTYKATDKTAITPGAQW--GGAGNVCNPDFDG---WAVGANVDYTIVDNLTFT 321


                  ....*....
gi 1425880960 314 LSVQYHDED 322
Cdd:pfam02530 322 AEVRYTDLG 330
 
Name Accession Description Interval E-value
Porin_2 pfam02530
Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria ...
 30-322 1.75e-74

Porin subfamily; This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.


Pssm-ID: 308243  Cd Length: 355  Bit Score: 233.61  E-value: 1.75e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960  30 EPEPVEYVRVCDAYGTGYFYIPGTETCLSISGYIRTEVRFGDHI---------SGDSDVDFWTRGQVTFQAKNDTEYGTL 100
Cdd:pfam02530   7 EPEPVEYVKVCDAYGAGYFYIPGTETCLKIGGYVRADVGFGDNPdnggdgqggRLTSDWDKFSRADLNVDTRTETELGTL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960 101 TGVITLRYNVDNASDQE--------ALLDEGYIDIAGFRVGKLYSWWDDDMSGETDTLASNE-----TTHNSIRYQYENG 167
Cdd:pfam02530  87 RTFFESVFNWTTGSYTGdgsdsnggLGVYFAFIQLGGLRVGKDYSWFDTWLGYEGDVINNSGgpygnTGTNSISYTFDAG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960 168 A-FAAGISVDELEED-----YATKPGEGPNNFGVAGQVSYKAGAISAYLLAGYDTDTSEVAVRGIVYADIGPG-TLGIAG 240
Cdd:pfam02530 167 NgFSAGISLEELEGTrdlgaYGANSYIGSYTPDVVGGVKVKQGWGAFQGVVAYDSDKEEGAVRARLSVKAGDGdSLNIAG 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425880960 241 VWASGANYYYEESE-------WTIAAEYALKINDKWKITPGFQYfeNIALEADGNGFTGgsaYTTGVTIDYQIVEDLRTK 313
Cdd:pfam02530 247 GYASGANRYTGDSEyhnwggnWAVWAGYTYKATDKTAITPGAQW--GGAGNVCNPDFDG---WAVGANVDYTIVDNLTFT 321


                  ....*....
gi 1425880960 314 LSVQYHDED 322
Cdd:pfam02530 322 AEVRYTDLG 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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